RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 FAHD1Q6P587 224 aa12.3□□□□□ -0.44
SPTLC1-201ENST00000262554 ENPP7Q6UWV6 458 aa12.3□□□□□ -0.44
SPTLC1-201ENST00000262554 KIAA1324Q6UXG2 1013 aaKnown RBP12.3□□□□□ -0.44
SPTLC1-201ENST00000262554 CEACAM20Q6UY09 585 aa12.3□□□□□ -0.44
SPTLC1-201ENST00000262554 TTC29Q8NA56 475 aaPredicted RBP12.3□□□□□ -0.44
SPTLC1-201ENST00000262554 OR2L3Q8NG85 312 aa12.3□□□□□ -0.44
SPTLC1-201ENST00000262554 ZNF420Q8TAQ5 688 aaPredicted RBP12.3□□□□□ -0.44
SPTLC1-201ENST00000262554 GEMIN6Q8WXD5 167 aaKnown RBP12.3□□□□□ -0.44
SPTLC1-201ENST00000262554 APOL4Q9BPW4 351 aa12.3□□□□□ -0.44
SPTLC1-201ENST00000262554 C17orf62Q9BQA9 187 aa12.3□□□□□ -0.44
SPTLC1-201ENST00000262554 C8orf33Q9H7E9 229 aaPredicted RBP12.3□□□□□ -0.44
SPTLC1-201ENST00000262554 SLC6A20Q9NP91 592 aa12.3□□□□□ -0.44
SPTLC1-201ENST00000262554 SLAMF7Q9NQ25 335 aa12.3□□□□□ -0.44
SPTLC1-201ENST00000262554 NDUFAF4Q9P032 175 aa12.3□□□□□ -0.44
SPTLC1-201ENST00000262554 SCHIP1Q9P0W5 487 aaPredicted RBP12.3□□□□□ -0.44
SPTLC1-201ENST00000262554 GMPPBQ9Y5P6 360 aa12.3□□□□□ -0.44
SPTLC1-201ENST00000262554 COL4A2P08572 1712 aa12.3□□□□□ -0.44
SPTLC1-201ENST00000262554 C5orf58C9J3I9 102 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 TNFRSF11BO00300 401 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 HAT1O14929 419 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 CYP4B1P13584 511 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 JUNBP17275 347 aaPredicted RBP12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 HTR1BP28222 390 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 NDUFS1P28331 727 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 PCSK6P29122 969 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 AHRP35869 848 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 SIM2Q14190 667 aaPredicted RBP12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 LRRC32Q14392 662 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 REEP3Q6NUK4 255 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 TMEM145Q8NBT3 493 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 FBLIM1Q8WUP2 373 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 PDXPQ96GD0 296 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 CNDP2Q96KP4 475 aaKnown RBP12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 MRGPRX1Q96LB2 322 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 WDR92Q96MX6 357 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 TEFMQ96QE5 360 aaKnown RBP12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 GDF15Q99988 308 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 DPH7Q9BTV6 452 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 FAIM2Q9BWQ8 316 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 FANCEQ9HB96 536 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 TRPV5Q9NQA5 729 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 THSD1Q9NS62 852 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 ACSS1Q9NUB1 689 aaPredicted RBP12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 TEX10Q9NXF1 929 aaPredicted RBP12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 TAS2R7Q9NYW3 318 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 C5AR2Q9P296 337 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 TESMINQ9Y4I5 508 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 DGKBQ9Y6T7 804 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 PRAMEF33A0A0G2JMD5 474 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 A0A0G2JN53 185 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 SLC1A7O00341 560 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 APBB3O95704 486 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 CCDC159P0C7I6 412 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 AGXTP21549 392 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 LTBRP36941 435 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 CLK3P49761 638 aaKnown RBP12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 PCBP3P57721 371 aaKnown RBP12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 CDK5R2Q13319 367 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 SLC9A5Q14940 896 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 MLC1Q15049 377 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 NDUFAF5Q5TEU4 345 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 TRIM69Q86WT6 500 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 ARMC8Q8IUR7 673 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 FAM20CQ8IXL6 584 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 GIPC3Q8TF64 312 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 OR1E3Q8WZA6 343 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 ZNF566Q969W8 418 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 MSLNLQ96KJ4 702 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 ZNF300Q96RE9 604 aaPredicted RBP12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 A4GALTQ9NPC4 353 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 EHD3Q9NZN3 535 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 OR6C2Q9NZP2 312 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 TBC1D29Q9UFV1 150 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 RAB23Q9ULC3 237 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 SNX7Q9UNH6 387 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 LYVE1Q9Y5Y7 322 aa12.29□□□□□ -0.44
SPTLC1-201ENST00000262554 ISM1B1AKI9 464 aa12.28□□□□□ -0.44
SPTLC1-201ENST00000262554 ERI3O43414 337 aaKnown RBP12.28□□□□□ -0.44
SPTLC1-201ENST00000262554 NOL3O60936 208 aaKnown RBP12.28□□□□□ -0.44
SPTLC1-201ENST00000262554 GUCY1B2O75343 617 aa12.28□□□□□ -0.44
SPTLC1-201ENST00000262554 TNFRSF1BP20333 461 aa12.28□□□□□ -0.44
SPTLC1-201ENST00000262554 HNRNPA2B1P22626 353 aaKnown RBP12.28□□□□□ -0.44
SPTLC1-201ENST00000262554 DCKP27707 260 aa12.28□□□□□ -0.44
SPTLC1-201ENST00000262554 PEBP1P30086 187 aaKnown RBP12.28□□□□□ -0.44
SPTLC1-201ENST00000262554 OR1E2P47887 323 aa12.28□□□□□ -0.44
SPTLC1-201ENST00000262554 ARFIP1P53367 373 aa12.28□□□□□ -0.44
SPTLC1-201ENST00000262554 SPIBQ01892 262 aa12.28□□□□□ -0.44
SPTLC1-201ENST00000262554 TUBA3CQ13748 450 aa12.28□□□□□ -0.44
SPTLC1-201ENST00000262554 ADPRMQ3LIE5 342 aa12.28□□□□□ -0.44
SPTLC1-201ENST00000262554 EOGTQ5NDL2 527 aa12.28□□□□□ -0.44
SPTLC1-201ENST00000262554 GPR107Q5VW38 600 aa12.28□□□□□ -0.44
SPTLC1-201ENST00000262554 KIAA1614Q5VZ46 1190 aa12.28□□□□□ -0.44
SPTLC1-201ENST00000262554 WASH2PQ6VEQ5 465 aa12.28□□□□□ -0.44
SPTLC1-201ENST00000262554 ZNF793Q6ZN11 406 aa12.28□□□□□ -0.44
SPTLC1-201ENST00000262554 RD3Q7Z3Z2 195 aa12.28□□□□□ -0.44
SPTLC1-201ENST00000262554 C6orf120Q7Z4R8 191 aa12.28□□□□□ -0.44
SPTLC1-201ENST00000262554 TSEN54Q7Z6J9 526 aaKnown RBP12.28□□□□□ -0.44
SPTLC1-201ENST00000262554 AMIGO1Q86WK6 493 aa12.28□□□□□ -0.44
SPTLC1-201ENST00000262554 SPARTQ8N0X7 666 aa12.28□□□□□ -0.44
SPTLC1-201ENST00000262554 FBXL6Q8N531 539 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms