RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 ADAM18Q9Y3Q7 739 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 CLDN11O75508 207 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 UBXN7O94888 489 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 SLC34A2O95436 690 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 THP07101 528 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 UGT2B7P16662 529 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 FRKP42685 505 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-220ENST00000641603 GRIN2CQ14957 1233 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 ZNF678Q5SXM1 525 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 H3F3CQ6NXT2 135 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 MED27Q6P2C8 311 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 KCNIP4Q6PIL6 250 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 CES3Q6UWW8 571 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 FRRS1Q6ZNA5 592 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 HSD17B13Q7Z5P4 300 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-220ENST00000641603 ZER1Q7Z7L7 766 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 NPAS3Q8IXF0 933 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 BEND7Q8N7W2 519 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-220ENST00000641603 SLC43A3Q8NBI5 491 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 OR4D10Q8NGI6 311 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 GNPDA2Q8TDQ7 276 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 MARC2Q969Z3 335 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 TMIGD2Q96BF3 282 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 SPNS1Q9H2V7 528 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 NLE1Q9NVX2 485 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-220ENST00000641603 IL37Q9NZH6 218 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 H7C417 338 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 TAAR5O14804 337 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 B4GALT5O43286 388 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 PRKCGP05129 697 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 SCG5P05408 212 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 TPOP07202 933 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 ARP10275 920 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 DCTP40126 519 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 ECI1P42126 302 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 RGS19P49795 217 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 SNRPD1P62314 119 aaKnown RBP4.5□□□□□ -1.69
SCN1A-220ENST00000641603 SSBP1Q04837 148 aaKnown RBP4.5□□□□□ -1.69
SCN1A-220ENST00000641603 VARS2Q5ST30 1063 aaKnown RBP4.5□□□□□ -1.69
SCN1A-220ENST00000641603 SPOUT1Q5T280 376 aaKnown RBP4.5□□□□□ -1.69
SCN1A-220ENST00000641603 BRAT1Q6PJG6 821 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 UBE2R2Q712K3 238 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-220ENST00000641603 SERPINA11Q86U17 422 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 C17orf64Q86WR6 236 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 PHYHIPLQ96FC7 376 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 ORAI2Q96SN7 254 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 CDADC1Q9BWV3 514 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 POLE4Q9NR33 117 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 DUSP22Q9NRW4 184 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 MTPAPQ9NVV4 582 aaKnown RBP eCLIP4.5□□□□□ -1.69
SCN1A-220ENST00000641603 POU2F3Q9UKI9 436 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 ZNF780BQ9Y6R6 833 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 MAP2P11137 1827 aaKnown RBP4.5□□□□□ -1.69
SCN1A-220ENST00000641603 TRBC2A0A5B9 178 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 UBE2Q2LH0YL09 131 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 SCAMP3O14828 347 aaKnown RBP4.5□□□□□ -1.69
SCN1A-220ENST00000641603 GPRIN2O60269 458 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 C5AR1P21730 350 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 GABRA5P31644 462 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 NSG1P42857 185 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 H3F3AP84243 136 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 CDK6Q00534 326 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 OPCMLQ14982 345 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 KIAA1211LQ6NV74 962 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 TRMT10BQ6PF06 316 aaKnown RBP4.5□□□□□ -1.69
SCN1A-220ENST00000641603 CNIH2Q6PI25 160 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 WASH2PQ6VEQ5 465 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 IFNLR1Q8IU57 520 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-220ENST00000641603 ZNF584Q8IVC4 421 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 MAGEH1Q9H213 219 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 TNKS2Q9H2K2 1166 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 ASB8Q9H765 288 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 PXMP2Q9NR77 195 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 C1GALT1Q9NS00 363 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 LIPT1Q9Y234 373 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 FFAR3O14843 346 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 SLC16A5O15375 505 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 GPR42O15529 346 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 SCAF4O95104 1147 aaKnown RBP4.5□□□□□ -1.69
SCN1A-220ENST00000641603 ALDOAP04075 364 aaKnown RBP4.5□□□□□ -1.69
SCN1A-220ENST00000641603 LCKP06239 509 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 CYP2B6P20813 491 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 OR1E1P30953 314 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 SLC6A6P31641 620 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 CAP2P40123 477 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 HTR3AP46098 478 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 NUMBP49757 651 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 CLK2P49760 499 aaKnown RBP4.5□□□□□ -1.69
SCN1A-220ENST00000641603 TECRLQ5HYJ1 363 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 TMEM198Q66K66 360 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 CFAP77Q6ZQR2 320 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 PLPPR4Q7Z2D5 763 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 DSG4Q86SJ6 1040 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 DCUN1D3Q8IWE4 304 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 OR8D1Q8WZ84 308 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 THAP7Q9BT49 309 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-220ENST00000641603 KLHL42Q9P2K6 505 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 ETV7Q9Y603 341 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 KIF1AQ12756 1690 aa4.5□□□□□ -1.69
SCN1A-220ENST00000641603 PSMD9O00233 223 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms