RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 M0QX08 132 aa13.76□□□□□ -0.21
VRK3-217ENST00000599538 CLEC3AO75596 197 aa13.76□□□□□ -0.21
VRK3-217ENST00000599538 BMP10O95393 424 aa13.76□□□□□ -0.21
VRK3-217ENST00000599538 ACTR1BP42025 376 aa13.76□□□□□ -0.21
VRK3-217ENST00000599538 PRIM2P49643 509 aa13.76□□□□□ -0.21
VRK3-217ENST00000599538 CDK9P50750 372 aaKnown RBP13.76□□□□□ -0.21
VRK3-217ENST00000599538 MANFP55145 182 aaKnown RBP13.76□□□□□ -0.21
VRK3-217ENST00000599538 PCBP4P57723 403 aaKnown RBP13.76□□□□□ -0.21
VRK3-217ENST00000599538 ACTR1AP61163 376 aa13.76□□□□□ -0.21
VRK3-217ENST00000599538 CCINQ13939 588 aa13.76□□□□□ -0.21
VRK3-217ENST00000599538 MEP1AQ16819 746 aa13.76□□□□□ -0.21
VRK3-217ENST00000599538 Q6ZS52 159 aa13.76□□□□□ -0.21
VRK3-217ENST00000599538 TMEM26Q6ZUK4 368 aa13.76□□□□□ -0.21
VRK3-217ENST00000599538 SFTPA2Q8IWL1 248 aa13.76□□□□□ -0.21
VRK3-217ENST00000599538 ASB12Q8WXK4 309 aa13.76□□□□□ -0.21
VRK3-217ENST00000599538 RDH12Q96NR8 316 aa13.76□□□□□ -0.21
VRK3-217ENST00000599538 DOHHQ9BU89 302 aa13.76□□□□□ -0.21
VRK3-217ENST00000599538 RSPO3Q9BXY4 272 aaPredicted RBP13.76□□□□□ -0.21
VRK3-217ENST00000599538 PAPOLBQ9NRJ5 636 aaKnown RBP13.76□□□□□ -0.21
VRK3-217ENST00000599538 SIRT3Q9NTG7 399 aaPredicted RBP13.76□□□□□ -0.21
VRK3-217ENST00000599538 IFT80Q9P2H3 777 aaPredicted RBP13.76□□□□□ -0.21
VRK3-217ENST00000599538 SAMHD1Q9Y3Z3 626 aaKnown RBP13.76□□□□□ -0.21
VRK3-217ENST00000599538 A0A087WXM4 84 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 ISM1B1AKI9 464 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 BTN3A3O00478 584 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 PDPK1O15530 556 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 KCNJ13O60928 360 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 RASGRP1O95267 797 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 FESP07332 822 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 CYP4B1P13584 511 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 CDH2P19022 906 aaPredicted RBP13.75□□□□□ -0.21
VRK3-217ENST00000599538 AGXTP21549 392 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 HNRNPA2B1P22626 353 aaKnown RBP13.75□□□□□ -0.21
VRK3-217ENST00000599538 IGFBP4P22692 258 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 EPHA2P29317 976 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 SLC19A1P41440 591 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 SSR2P43308 183 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 SELENOWP63302 87 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 CDK6Q00534 326 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 IL1RL1Q01638 556 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 HEPACAMQ14CZ8 416 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 TEAD4Q15561 434 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 ZIC1Q15915 447 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 TNFAIP8L2Q6P589 184 aaPredicted RBP13.75□□□□□ -0.21
VRK3-217ENST00000599538 HORMAD2Q8N7B1 307 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 SMYD1Q8NB12 490 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 OR8K5Q8NH50 307 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 SPPL2AQ8TCT8 520 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 POP5Q969H6 163 aaKnown RBP13.75□□□□□ -0.21
VRK3-217ENST00000599538 TBC1D20Q96BZ9 403 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 MS4A6EQ96DS6 147 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 WDR92Q96MX6 357 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 RAB11FIP5Q9BXF6 653 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 PITHD1Q9GZP4 211 aaPredicted RBP13.75□□□□□ -0.21
VRK3-217ENST00000599538 TTYH1Q9H313 450 aaPredicted RBP13.75□□□□□ -0.21
VRK3-217ENST00000599538 TMEM38AQ9H6F2 299 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 TRPV5Q9NQA5 729 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 C2orf42Q9NWW7 574 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 ADPRHL2Q9NX46 363 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 PDP1Q9P0J1 537 aaPredicted RBP13.75□□□□□ -0.21
VRK3-217ENST00000599538 AASSQ9UDR5 926 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 ZNF451Q9Y4E5 1061 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 NINQ8N4C6 2090 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 LOC100130705A0A1B0GUX0 176 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 A0A1W2PS29 197 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 UQCRC2P22695 453 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 IGFBP5P24593 272 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 PCSK6P29122 969 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 SERPINB1P30740 379 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 DNAJA1P31689 397 aaKnown RBP13.75□□□□□ -0.21
VRK3-217ENST00000599538 ITGA1P56199 1179 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 CD47Q08722 323 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 FADDQ13158 208 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 COL19A1Q14993 1142 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 NDUFAF5Q5TEU4 345 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 TTC23Q5W5X9 447 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 TRIM40Q6P9F5 258 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 LPCAT2Q7L5N7 544 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 PIWIL3Q7Z3Z3 882 aaKnown RBP13.75□□□□□ -0.21
VRK3-217ENST00000599538 THAP5Q7Z6K1 395 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 AMIGO1Q86WK6 493 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 TRIM69Q86WT6 500 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 C8orf59Q8N0T1 100 aaPredicted RBP13.75□□□□□ -0.21
VRK3-217ENST00000599538 LCN9Q8WX39 176 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 PATE1Q8WXA2 126 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 ING2Q9H160 280 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 C8orf33Q9H7E9 229 aaPredicted RBP13.75□□□□□ -0.21
VRK3-217ENST00000599538 KIR3DX1Q9H7L2 352 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 THUMPD1Q9NXG2 353 aaKnown RBP13.75□□□□□ -0.21
VRK3-217ENST00000599538 NDUFAF4Q9P032 175 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 C3orf18Q9UK00 162 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 NDRG2Q9UN36 371 aaKnown RBP13.75□□□□□ -0.21
VRK3-217ENST00000599538 DMTF1Q9Y222 760 aa13.75□□□□□ -0.21
VRK3-217ENST00000599538 ERI3O43414 337 aaKnown RBP13.74□□□□□ -0.21
VRK3-217ENST00000599538 CHRM5P08912 532 aaPredicted RBP13.74□□□□□ -0.21
VRK3-217ENST00000599538 HOXC4P09017 264 aaPredicted RBP13.74□□□□□ -0.21
VRK3-217ENST00000599538 ARAFP10398 606 aa13.74□□□□□ -0.21
VRK3-217ENST00000599538 FPR1P21462 350 aa13.74□□□□□ -0.21
VRK3-217ENST00000599538 RRM2P31350 389 aa13.74□□□□□ -0.21
VRK3-217ENST00000599538 FRKP42685 505 aaPredicted RBP13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms