RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 RTCAO00442 366 aaKnown RBP13.87□□□□□ -0.19
CLN3-213ENST00000565047 SUPT3HO75486 399 aa13.87□□□□□ -0.19
CLN3-213ENST00000565047 MYO1DO94832 1006 aa13.87□□□□□ -0.19
CLN3-213ENST00000565047 S100BP04271 92 aaPredicted RBP13.87□□□□□ -0.19
CLN3-213ENST00000565047 UQCRHP07919 91 aa13.87□□□□□ -0.19
CLN3-213ENST00000565047 MYBL2P10244 700 aa13.87□□□□□ -0.19
CLN3-213ENST00000565047 HPDP32754 393 aaPredicted RBP13.87□□□□□ -0.19
CLN3-213ENST00000565047 MSH2P43246 934 aa13.87□□□□□ -0.19
CLN3-213ENST00000565047 TAS2R50P59544 299 aa13.87□□□□□ -0.19
CLN3-213ENST00000565047 PCBP2Q15366 365 aaKnown RBP eCLIP13.87□□□□□ -0.19
CLN3-213ENST00000565047 ZRSR2Q15696 482 aaKnown RBP13.87□□□□□ -0.19
CLN3-213ENST00000565047 FAM83EQ2M2I3 478 aa13.87□□□□□ -0.19
CLN3-213ENST00000565047 TMEM35AQ53FP2 167 aa13.87□□□□□ -0.19
CLN3-213ENST00000565047 RNFT1Q5M7Z0 435 aa13.87□□□□□ -0.19
CLN3-213ENST00000565047 DEPDC1Q5TB30 811 aa13.87□□□□□ -0.19
CLN3-213ENST00000565047 SLC25A25Q6KCM7 469 aa13.87□□□□□ -0.19
CLN3-213ENST00000565047 MED27Q6P2C8 311 aa13.87□□□□□ -0.19
CLN3-213ENST00000565047 ACOT4Q8N9L9 421 aa13.87□□□□□ -0.19
CLN3-213ENST00000565047 THAP3Q8WTV1 239 aaPredicted RBP13.87□□□□□ -0.19
CLN3-213ENST00000565047 PTPMT1Q8WUK0 201 aaPredicted RBP13.87□□□□□ -0.19
CLN3-213ENST00000565047 MRRFQ96E11 262 aaKnown RBP13.87□□□□□ -0.19
CLN3-213ENST00000565047 MAPKAP1Q9BPZ7 522 aa13.87□□□□□ -0.19
CLN3-213ENST00000565047 TBCDQ9BTW9 1192 aa13.87□□□□□ -0.19
CLN3-213ENST00000565047 ZNF717Q9BY31 904 aaPredicted RBP13.87□□□□□ -0.19
CLN3-213ENST00000565047 ZNF358Q9NW07 568 aa13.87□□□□□ -0.19
CLN3-213ENST00000565047 LRFN1Q9P244 771 aa13.87□□□□□ -0.19
CLN3-213ENST00000565047 OPTCQ9UBM4 332 aa13.87□□□□□ -0.19
CLN3-213ENST00000565047 VTI1BQ9UEU0 232 aa13.87□□□□□ -0.19
CLN3-213ENST00000565047 ZNF835Q9Y2P0 537 aa13.87□□□□□ -0.19
CLN3-213ENST00000565047 CELSR2Q9HCU4 2923 aa13.87□□□□□ -0.19
CLN3-213ENST00000565047 A0A088AWK7 358 aa13.86□□□□□ -0.19
CLN3-213ENST00000565047 SYCE1LA8MT33 242 aa13.86□□□□□ -0.19
CLN3-213ENST00000565047 CLDN4O14493 209 aa13.86□□□□□ -0.19
CLN3-213ENST00000565047 NME2P1O60361 137 aa13.86□□□□□ -0.19
CLN3-213ENST00000565047 UNC5CO95185 931 aa13.86□□□□□ -0.19
CLN3-213ENST00000565047 TGFB1P01137 390 aa13.86□□□□□ -0.19
CLN3-213ENST00000565047 EPB42P16452 691 aa13.86□□□□□ -0.19
CLN3-213ENST00000565047 ZNF10P21506 573 aaPredicted RBP13.86□□□□□ -0.19
CLN3-213ENST00000565047 NME2P22392 152 aa13.86□□□□□ -0.19
CLN3-213ENST00000565047 HIST1H1TP22492 207 aaPredicted RBP13.86□□□□□ -0.19
CLN3-213ENST00000565047 HLCSP50747 726 aa13.86□□□□□ -0.19
CLN3-213ENST00000565047 CLCN2P51788 898 aa13.86□□□□□ -0.19
CLN3-213ENST00000565047 ALDH18A1P54886 795 aaKnown RBP13.86□□□□□ -0.19
CLN3-213ENST00000565047 HIST2H2ACQ16777 129 aaPredicted RBP13.86□□□□□ -0.19
CLN3-213ENST00000565047 PFKFB4Q16877 469 aa13.86□□□□□ -0.19
CLN3-213ENST00000565047 GLE1Q53GS7 698 aaKnown RBP13.86□□□□□ -0.19
CLN3-213ENST00000565047 TECRLQ5HYJ1 363 aa13.86□□□□□ -0.19
CLN3-213ENST00000565047 C1QL3Q5VWW1 255 aa13.86□□□□□ -0.19
CLN3-213ENST00000565047 KHDRBS2Q5VWX1 349 aaKnown RBP13.86□□□□□ -0.19
CLN3-213ENST00000565047 HIST2H2AA3Q6FI13 130 aa13.86□□□□□ -0.19
CLN3-213ENST00000565047 METTL2BQ6P1Q9 378 aaKnown RBP13.86□□□□□ -0.19
CLN3-213ENST00000565047 GFRALQ6UXV0 394 aa13.86□□□□□ -0.19
CLN3-213ENST00000565047 GALNTL5Q7Z4T8 443 aa13.86□□□□□ -0.19
CLN3-213ENST00000565047 TMEM151AQ8N4L1 468 aa13.86□□□□□ -0.19
CLN3-213ENST00000565047 TEX9Q8N6V9 391 aa13.86□□□□□ -0.19
CLN3-213ENST00000565047 L3MBTL4Q8NA19 623 aa13.86□□□□□ -0.19
CLN3-213ENST00000565047 ARMC2Q8NEN0 867 aa13.86□□□□□ -0.19
CLN3-213ENST00000565047 HUS1BQ8NHY5 278 aa13.86□□□□□ -0.19
CLN3-213ENST00000565047 UBE2E3Q969T4 207 aa13.86□□□□□ -0.19
CLN3-213ENST00000565047 ANKRD9Q96BM1 317 aaPredicted RBP13.86□□□□□ -0.19
CLN3-213ENST00000565047 DEFB126Q9BYW3 111 aa13.86□□□□□ -0.19
CLN3-213ENST00000565047 ADAP2Q9NPF8 381 aa13.86□□□□□ -0.19
CLN3-213ENST00000565047 KLHL1Q9NR64 748 aa13.86□□□□□ -0.19
CLN3-213ENST00000565047 SEC14L3Q9UDX4 400 aa13.86□□□□□ -0.19
CLN3-213ENST00000565047 CRYBG3Q68DQ2 2970 aa13.86□□□□□ -0.19
CLN3-213ENST00000565047 TRBV11-1A0A0K0K1C0 115 aa13.85□□□□□ -0.19
CLN3-213ENST00000565047 A0A1B0GUH1 482 aa13.85□□□□□ -0.19
CLN3-213ENST00000565047 H0YIV9 168 aa13.85□□□□□ -0.19
CLN3-213ENST00000565047 ZG16O60844 167 aa13.85□□□□□ -0.19
CLN3-213ENST00000565047 SIX3O95343 332 aaPredicted RBP13.85□□□□□ -0.19
CLN3-213ENST00000565047 CD46P15529 392 aa13.85□□□□□ -0.19
CLN3-213ENST00000565047 TYK2P29597 1187 aa13.85□□□□□ -0.19
CLN3-213ENST00000565047 SERPINB1P30740 379 aa13.85□□□□□ -0.19
CLN3-213ENST00000565047 PHBP35232 272 aa13.85□□□□□ -0.19
CLN3-213ENST00000565047 PIK3CBP42338 1070 aa13.85□□□□□ -0.19
CLN3-213ENST00000565047 CA7P43166 264 aa13.85□□□□□ -0.19
CLN3-213ENST00000565047 CYB561P49447 251 aa13.85□□□□□ -0.19
CLN3-213ENST00000565047 SERPINB8P50452 374 aa13.85□□□□□ -0.19
CLN3-213ENST00000565047 IGLV3-21P80748 117 aaPredicted RBP13.85□□□□□ -0.19
CLN3-213ENST00000565047 OC90Q02509 493 aaPredicted RBP13.85□□□□□ -0.19
CLN3-213ENST00000565047 SLC13A2Q13183 592 aa13.85□□□□□ -0.19
CLN3-213ENST00000565047 ELAVL1Q15717 326 aaKnown RBP13.85□□□□□ -0.19
CLN3-213ENST00000565047 LIPJQ5W064 366 aa13.85□□□□□ -0.19
CLN3-213ENST00000565047 OR4C11Q6IEV9 310 aa13.85□□□□□ -0.19
CLN3-213ENST00000565047 Q6ZPB1 254 aaPredicted RBP13.85□□□□□ -0.19
CLN3-213ENST00000565047 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.85□□□□□ -0.19
CLN3-213ENST00000565047 CLNKQ7Z7G1 428 aa13.85□□□□□ -0.19
CLN3-213ENST00000565047 TMEM178AQ8NBL3 297 aa13.85□□□□□ -0.19
CLN3-213ENST00000565047 SRFBP1Q8NEF9 429 aaKnown RBP13.85□□□□□ -0.19
CLN3-213ENST00000565047 WDR20Q8TBZ3 569 aa13.85□□□□□ -0.19
CLN3-213ENST00000565047 DCAKDQ8WVC6 231 aa13.85□□□□□ -0.19
CLN3-213ENST00000565047 NCLNQ969V3 563 aa13.85□□□□□ -0.19
CLN3-213ENST00000565047 CMTM7Q96FZ5 175 aa13.85□□□□□ -0.19
CLN3-213ENST00000565047 VMP1Q96GC9 406 aa13.85□□□□□ -0.19
CLN3-213ENST00000565047 GPR137Q96N19 417 aa13.85□□□□□ -0.19
CLN3-213ENST00000565047 SORBS1Q9BX66 1292 aaKnown RBP13.85□□□□□ -0.19
CLN3-213ENST00000565047 ROGDIQ9GZN7 287 aa13.85□□□□□ -0.19
CLN3-213ENST00000565047 OR51B5Q9H339 312 aa13.85□□□□□ -0.19
CLN3-213ENST00000565047 PNO1Q9NRX1 252 aaKnown RBP13.85□□□□□ -0.19
CLN3-213ENST00000565047 PSD3Q9NYI0 1048 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms