RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 POU4F3Q15319 338 aa10.1□□□□□ -0.79
DDX41-216ENST00000513562 NEPROQ6NW34 567 aa10.1□□□□□ -0.79
DDX41-216ENST00000513562 HSDL2Q6YN16 418 aa10.1□□□□□ -0.79
DDX41-216ENST00000513562 CTAGE6Q86UF2 777 aa10.1□□□□□ -0.79
DDX41-216ENST00000513562 LACC1Q8IV20 430 aa10.1□□□□□ -0.79
DDX41-216ENST00000513562 TBC1D19Q8N5T2 526 aa10.1□□□□□ -0.79
DDX41-216ENST00000513562 UBL4BQ8N7F7 174 aa10.1□□□□□ -0.79
DDX41-216ENST00000513562 CCDC89Q8N998 374 aa10.1□□□□□ -0.79
DDX41-216ENST00000513562 NEIL3Q8TAT5 605 aa10.1□□□□□ -0.79
DDX41-216ENST00000513562 SMPDL3BQ92485 455 aa10.1□□□□□ -0.79
DDX41-216ENST00000513562 ALKBH8Q96BT7 664 aaKnown RBP10.1□□□□□ -0.79
DDX41-216ENST00000513562 CAPZA3Q96KX2 299 aa10.1□□□□□ -0.79
DDX41-216ENST00000513562 OR4K3Q96R72 315 aa10.1□□□□□ -0.79
DDX41-216ENST00000513562 GPR21Q99679 349 aa10.1□□□□□ -0.79
DDX41-216ENST00000513562 BDH2Q9BUT1 245 aa10.1□□□□□ -0.79
DDX41-216ENST00000513562 FRMD8P1Q9BZ68 369 aaPredicted RBP10.1□□□□□ -0.79
DDX41-216ENST00000513562 SPNS1Q9H2V7 528 aa10.1□□□□□ -0.79
DDX41-216ENST00000513562 ADAP2Q9NPF8 381 aa10.1□□□□□ -0.79
DDX41-216ENST00000513562 TRPS1Q9UHF7 1281 aa10.1□□□□□ -0.79
DDX41-216ENST00000513562 AMFRQ9UKV5 643 aa10.1□□□□□ -0.79
DDX41-216ENST00000513562 SOX13Q9UN79 622 aa10.1□□□□□ -0.79
DDX41-216ENST00000513562 ZNF148Q9UQR1 794 aa10.1□□□□□ -0.79
DDX41-216ENST00000513562 MXRA5Q9NR99 2828 aa10.1□□□□□ -0.79
DDX41-216ENST00000513562 HEATR5BQ9P2D3 2071 aa10.1□□□□□ -0.79
DDX41-216ENST00000513562 ZANQ9Y493 2812 aa10.09□□□□□ -0.79
DDX41-216ENST00000513562 URADA6NGE7 173 aa10.09□□□□□ -0.79
DDX41-216ENST00000513562 TRIM64A6NGJ6 449 aa10.09□□□□□ -0.79
DDX41-216ENST00000513562 TRIM64BA6NI03 449 aa10.09□□□□□ -0.79
DDX41-216ENST00000513562 MIF4GDA9UHW6 222 aaKnown RBP10.09□□□□□ -0.79
DDX41-216ENST00000513562 KDM4EB2RXH2 506 aaPredicted RBP10.09□□□□□ -0.79
DDX41-216ENST00000513562 ZNF354AO60765 605 aaPredicted RBP10.09□□□□□ -0.79
DDX41-216ENST00000513562 SMPD2O60906 423 aa10.09□□□□□ -0.79
DDX41-216ENST00000513562 C8BP07358 591 aa10.09□□□□□ -0.79
DDX41-216ENST00000513562 C8GP07360 202 aa10.09□□□□□ -0.79
DDX41-216ENST00000513562 F7P08709 466 aaPredicted RBP10.09□□□□□ -0.79
DDX41-216ENST00000513562 ZSCAN5DPP0CG00 497 aa10.09□□□□□ -0.79
DDX41-216ENST00000513562 RPL22P35268 128 aaKnown RBP10.09□□□□□ -0.79
DDX41-216ENST00000513562 HNF4AP41235 474 aa10.09□□□□□ -0.79
DDX41-216ENST00000513562 WNT3P56703 355 aa10.09□□□□□ -0.79
DDX41-216ENST00000513562 HSD17B7P56937 341 aa10.09□□□□□ -0.79
DDX41-216ENST00000513562 SP140Q13342 867 aa10.09□□□□□ -0.79
DDX41-216ENST00000513562 ELAVL1Q15717 326 aaKnown RBP10.09□□□□□ -0.79
DDX41-216ENST00000513562 CATSPEREQ5SY80 951 aa10.09□□□□□ -0.79
DDX41-216ENST00000513562 ZNF470Q6ECI4 717 aa10.09□□□□□ -0.79
DDX41-216ENST00000513562 ADGRD1Q6QNK2 874 aa10.09□□□□□ -0.79
DDX41-216ENST00000513562 OPN5Q6U736 354 aa10.09□□□□□ -0.79
DDX41-216ENST00000513562 PEX26Q7Z412 305 aa10.09□□□□□ -0.79
DDX41-216ENST00000513562 LRRC25Q8N386 305 aaPredicted RBP10.09□□□□□ -0.79
DDX41-216ENST00000513562 TC2NQ8N9U0 490 aa10.09□□□□□ -0.79
DDX41-216ENST00000513562 ANKRD53Q8N9V6 530 aa10.09□□□□□ -0.79
DDX41-216ENST00000513562 TMEM52Q8NDY8 209 aa10.09□□□□□ -0.79
DDX41-216ENST00000513562 KIAA1191Q96A73 305 aa10.09□□□□□ -0.79
DDX41-216ENST00000513562 SNF8Q96H20 258 aa10.09□□□□□ -0.79
DDX41-216ENST00000513562 DACH2Q96NX9 599 aa10.09□□□□□ -0.79
DDX41-216ENST00000513562 CCDC68Q9H2F9 335 aa10.09□□□□□ -0.79
DDX41-216ENST00000513562 SLC6A15Q9H2J7 730 aa10.09□□□□□ -0.79
DDX41-216ENST00000513562 PARVBQ9HBI1 364 aa10.09□□□□□ -0.79
DDX41-216ENST00000513562 SH2D2AQ9NP31 389 aa10.09□□□□□ -0.79
DDX41-216ENST00000513562 ACKR4Q9NPB9 350 aa10.09□□□□□ -0.79
DDX41-216ENST00000513562 PRTFDC1Q9NRG1 225 aa10.09□□□□□ -0.79
DDX41-216ENST00000513562 JKAMPQ9P055 326 aa10.09□□□□□ -0.79
DDX41-216ENST00000513562 PACSIN2Q9UNF0 486 aaPredicted RBP10.09□□□□□ -0.79
DDX41-216ENST00000513562 SEC23IPQ9Y6Y8 1000 aaKnown RBP10.09□□□□□ -0.79
DDX41-216ENST00000513562 HIVEP2P31629 2446 aa10.08□□□□□ -0.8
DDX41-216ENST00000513562 SYNDIG1LA6NDD5 238 aa10.08□□□□□ -0.8
DDX41-216ENST00000513562 LRRC3CA6NJW4 275 aa10.08□□□□□ -0.8
DDX41-216ENST00000513562 AHRRA9YTQ3 701 aa10.08□□□□□ -0.8
DDX41-216ENST00000513562 CRLF1O75462 422 aa10.08□□□□□ -0.8
DDX41-216ENST00000513562 IL2RAP01589 272 aa10.08□□□□□ -0.8
DDX41-216ENST00000513562 RFPL3SP0C7P2 107 aa10.08□□□□□ -0.8
DDX41-216ENST00000513562 PAMP19021 973 aa10.08□□□□□ -0.8
DDX41-216ENST00000513562 CYLC1P35663 651 aaPredicted RBP10.08□□□□□ -0.8
DDX41-216ENST00000513562 PIGAP37287 484 aa10.08□□□□□ -0.8
DDX41-216ENST00000513562 HNRNPFP52597 415 aaKnown RBP10.08□□□□□ -0.8
DDX41-216ENST00000513562 REEP5Q00765 189 aa10.08□□□□□ -0.8
DDX41-216ENST00000513562 DHX9Q08211 1270 aaKnown RBP10.08□□□□□ -0.8
DDX41-216ENST00000513562 SLC13A2Q13183 592 aa10.08□□□□□ -0.8
DDX41-216ENST00000513562 BMPR2Q13873 1038 aa10.08□□□□□ -0.8
DDX41-216ENST00000513562 PHKG1Q16816 387 aa10.08□□□□□ -0.8
DDX41-216ENST00000513562 ARMC3Q5W041 872 aa10.08□□□□□ -0.8
DDX41-216ENST00000513562 LRRC8EQ6NSJ5 796 aa10.08□□□□□ -0.8
DDX41-216ENST00000513562 YTHDF3Q7Z739 585 aaKnown RBP10.08□□□□□ -0.8
DDX41-216ENST00000513562 DENND6AQ8IWF6 608 aa10.08□□□□□ -0.8
DDX41-216ENST00000513562 TMEM132CQ8N3T6 1108 aa10.08□□□□□ -0.8
DDX41-216ENST00000513562 MORN4Q8NDC4 146 aa10.08□□□□□ -0.8
DDX41-216ENST00000513562 TRPV3Q8NET8 790 aa10.08□□□□□ -0.8
DDX41-216ENST00000513562 OR8K3Q8NH51 312 aa10.08□□□□□ -0.8
DDX41-216ENST00000513562 OR56A3Q8NH54 315 aa10.08□□□□□ -0.8
DDX41-216ENST00000513562 C1orf54Q8WWF1 131 aa10.08□□□□□ -0.8
DDX41-216ENST00000513562 SREK1Q8WXA9 508 aaKnown RBP10.08□□□□□ -0.8
DDX41-216ENST00000513562 PIGTQ969N2 578 aa10.08□□□□□ -0.8
DDX41-216ENST00000513562 PYCR2Q96C36 320 aa10.08□□□□□ -0.8
DDX41-216ENST00000513562 AICDAQ9GZX7 198 aa10.08□□□□□ -0.8
DDX41-216ENST00000513562 LACRTQ9GZZ8 138 aa10.08□□□□□ -0.8
DDX41-216ENST00000513562 KLHL31Q9H511 634 aa10.08□□□□□ -0.8
DDX41-216ENST00000513562 ZFP64Q9NPA5 681 aa10.08□□□□□ -0.8
DDX41-216ENST00000513562 FBXO6Q9NRD1 293 aaPredicted RBP10.08□□□□□ -0.8
DDX41-216ENST00000513562 QPCTLQ9NXS2 382 aa10.08□□□□□ -0.8
DDX41-216ENST00000513562 COMMD10Q9Y6G5 202 aa10.08□□□□□ -0.8
DDX41-216ENST00000513562 CLCA3PQ9Y6N3 262 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms