RNA–Protein interactions for RNA: ENST00000489053.1

HDAC6-232, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-232ENST00000489053 TCRBV16S1A1N1A0A5B0 115 aa8.55□□□□□ -1.04
HDAC6-232ENST00000489053 UGDHO60701 494 aa8.55□□□□□ -1.04
HDAC6-232ENST00000489053 DDAH2O95865 285 aa8.55□□□□□ -1.04
HDAC6-232ENST00000489053 TGFB1P01137 390 aa8.55□□□□□ -1.04
HDAC6-232ENST00000489053 PTX3P26022 381 aaPredicted RBP8.55□□□□□ -1.04
HDAC6-232ENST00000489053 PPP2R1BP30154 601 aa8.55□□□□□ -1.04
HDAC6-232ENST00000489053 BUD31P41223 144 aaPredicted RBP8.55□□□□□ -1.04
HDAC6-232ENST00000489053 PIK3CBP42338 1070 aa8.55□□□□□ -1.04
HDAC6-232ENST00000489053 CASP2P42575 452 aa8.55□□□□□ -1.04
HDAC6-232ENST00000489053 CYB561P49447 251 aa8.55□□□□□ -1.04
HDAC6-232ENST00000489053 SNRPNP63162 240 aaKnown RBP8.55□□□□□ -1.04
HDAC6-232ENST00000489053 SRSF11Q05519 484 aaKnown RBP8.55□□□□□ -1.04
HDAC6-232ENST00000489053 TUBA3CQ13748 450 aa8.55□□□□□ -1.04
HDAC6-232ENST00000489053 SERTAD2Q14140 314 aa8.55□□□□□ -1.04
HDAC6-232ENST00000489053 TERF2Q15554 542 aa8.55□□□□□ -1.04
HDAC6-232ENST00000489053 CPSF6Q16630 551 aaKnown RBP eCLIP8.55□□□□□ -1.04
HDAC6-232ENST00000489053 C6orf163Q5TEZ5 329 aa8.55□□□□□ -1.04
HDAC6-232ENST00000489053 KHDRBS2Q5VWX1 349 aaKnown RBP8.55□□□□□ -1.04
HDAC6-232ENST00000489053 METTL2BQ6P1Q9 378 aaKnown RBP8.55□□□□□ -1.04
HDAC6-232ENST00000489053 TUBA3EQ6PEY2 450 aa8.55□□□□□ -1.04
HDAC6-232ENST00000489053 GFRALQ6UXV0 394 aa8.55□□□□□ -1.04
HDAC6-232ENST00000489053 GOLGA7Q7Z5G4 137 aa8.55□□□□□ -1.04
HDAC6-232ENST00000489053 LAS2Q8IYD9 372 aa8.55□□□□□ -1.04
HDAC6-232ENST00000489053 LGI4Q8N135 537 aa8.55□□□□□ -1.04
HDAC6-232ENST00000489053 ACOT4Q8N9L9 421 aa8.55□□□□□ -1.04
HDAC6-232ENST00000489053 B3GNT7Q8NFL0 401 aa8.55□□□□□ -1.04
HDAC6-232ENST00000489053 OR7G3Q8NG95 312 aa8.55□□□□□ -1.04
HDAC6-232ENST00000489053 OR14A16Q8NHC5 309 aa8.55□□□□□ -1.04
HDAC6-232ENST00000489053 ZNF473Q8WTR7 871 aaKnown RBP8.55□□□□□ -1.04
HDAC6-232ENST00000489053 THAP3Q8WTV1 239 aaPredicted RBP8.55□□□□□ -1.04
HDAC6-232ENST00000489053 DAZLQ92904 295 aaKnown RBP8.55□□□□□ -1.04
HDAC6-232ENST00000489053 VMP1Q96GC9 406 aa8.55□□□□□ -1.04
HDAC6-232ENST00000489053 MTERF1Q99551 399 aaKnown RBP8.55□□□□□ -1.04
HDAC6-232ENST00000489053 MS4A8Q9BY19 250 aa8.55□□□□□ -1.04
HDAC6-232ENST00000489053 MRPL46Q9H2W6 279 aaKnown RBP8.55□□□□□ -1.04
HDAC6-232ENST00000489053 OR51B5Q9H339 312 aa8.55□□□□□ -1.04
HDAC6-232ENST00000489053 ELOVL6Q9H5J4 265 aa8.55□□□□□ -1.04
HDAC6-232ENST00000489053 NOL11Q9H8H0 719 aaKnown RBP8.55□□□□□ -1.04
HDAC6-232ENST00000489053 LYRM4Q9HD34 91 aa8.55□□□□□ -1.04
HDAC6-232ENST00000489053 ADAP2Q9NPF8 381 aa8.55□□□□□ -1.04
HDAC6-232ENST00000489053 AHSPQ9NZD4 102 aa8.55□□□□□ -1.04
HDAC6-232ENST00000489053 LRFN1Q9P244 771 aa8.55□□□□□ -1.04
HDAC6-232ENST00000489053 COPG2Q9UBF2 871 aa8.55□□□□□ -1.04
HDAC6-232ENST00000489053 XPR1Q9UBH6 696 aa8.55□□□□□ -1.04
HDAC6-232ENST00000489053 SUCOQ9UBS9 1254 aaKnown RBP8.55□□□□□ -1.04
HDAC6-232ENST00000489053 ZNF490Q9ULM2 529 aaPredicted RBP8.55□□□□□ -1.04
HDAC6-232ENST00000489053 ERVK-11Q9UQG0 969 aa8.55□□□□□ -1.04
HDAC6-232ENST00000489053 SPENQ96T58 3664 aaKnown RBP8.54□□□□□ -1.04
HDAC6-232ENST00000489053 ANKRD12Q6UB98 2062 aa8.54□□□□□ -1.04
HDAC6-232ENST00000489053 RTCAO00442 366 aaKnown RBP8.54□□□□□ -1.04
HDAC6-232ENST00000489053 CDK2AP1O14519 115 aa8.54□□□□□ -1.04
HDAC6-232ENST00000489053 OR10H2O60403 315 aa8.54□□□□□ -1.04
HDAC6-232ENST00000489053 CTNSO60931 367 aa8.54□□□□□ -1.04
HDAC6-232ENST00000489053 DNAJB6O75190 326 aa8.54□□□□□ -1.04
HDAC6-232ENST00000489053 SLC25A12O75746 678 aa8.54□□□□□ -1.04
HDAC6-232ENST00000489053 ZFAND5O76080 213 aa8.54□□□□□ -1.04
HDAC6-232ENST00000489053 CBX6O95503 412 aa8.54□□□□□ -1.04
HDAC6-232ENST00000489053 ABHD2P08910 425 aa8.54□□□□□ -1.04
HDAC6-232ENST00000489053 SMIM10L1P0DMW3 83 aa8.54□□□□□ -1.04
HDAC6-232ENST00000489053 HIST1H1TP22492 207 aaPredicted RBP8.54□□□□□ -1.04
HDAC6-232ENST00000489053 ATP5A1P25705 553 aaKnown RBP8.54□□□□□ -1.04
HDAC6-232ENST00000489053 SSR4P51571 173 aa8.54□□□□□ -1.04
HDAC6-232ENST00000489053 EFNA3P52797 238 aa8.54□□□□□ -1.04
HDAC6-232ENST00000489053 LIM2P55344 173 aa8.54□□□□□ -1.04
HDAC6-232ENST00000489053 PLIN5Q00G26 463 aa8.54□□□□□ -1.04
HDAC6-232ENST00000489053 SLAMF1Q13291 335 aa8.54□□□□□ -1.04
HDAC6-232ENST00000489053 RUNX2Q13950 521 aa8.54□□□□□ -1.04
HDAC6-232ENST00000489053 PCBP2Q15366 365 aaKnown RBP eCLIP8.54□□□□□ -1.04
HDAC6-232ENST00000489053 ELAVL1Q15717 326 aaKnown RBP8.54□□□□□ -1.04
HDAC6-232ENST00000489053 MAPKAPK3Q16644 382 aa8.54□□□□□ -1.04
HDAC6-232ENST00000489053 ADPRMQ3LIE5 342 aa8.54□□□□□ -1.04
HDAC6-232ENST00000489053 TECRLQ5HYJ1 363 aa8.54□□□□□ -1.04
HDAC6-232ENST00000489053 C10orf62Q5T681 223 aaPredicted RBP8.54□□□□□ -1.04
HDAC6-232ENST00000489053 OR4C11Q6IEV9 310 aa8.54□□□□□ -1.04
HDAC6-232ENST00000489053 ADNP2Q6IQ32 1131 aa8.54□□□□□ -1.04
HDAC6-232ENST00000489053 PAGE2Q7Z2X7 111 aa8.54□□□□□ -1.04
HDAC6-232ENST00000489053 NUDT13Q86X67 352 aa8.54□□□□□ -1.04
HDAC6-232ENST00000489053 KIF2BQ8N4N8 673 aa8.54□□□□□ -1.04
HDAC6-232ENST00000489053 HUS1BQ8NHY5 278 aa8.54□□□□□ -1.04
HDAC6-232ENST00000489053 RBM18Q96H35 190 aaKnown RBP8.54□□□□□ -1.04
HDAC6-232ENST00000489053 SMIM10Q96HG1 83 aa8.54□□□□□ -1.04
HDAC6-232ENST00000489053 MAGED4Q96JG8 741 aa8.54□□□□□ -1.04
HDAC6-232ENST00000489053 DGAT2Q96PD7 388 aa8.54□□□□□ -1.04
HDAC6-232ENST00000489053 SERPINI1Q99574 410 aa8.54□□□□□ -1.04
HDAC6-232ENST00000489053 FUT8Q9BYC5 575 aa8.54□□□□□ -1.04
HDAC6-232ENST00000489053 ALOXE3Q9BYJ1 711 aa8.54□□□□□ -1.04
HDAC6-232ENST00000489053 OR8D2Q9GZM6 311 aa8.54□□□□□ -1.04
HDAC6-232ENST00000489053 DMRT3Q9NQL9 472 aa8.54□□□□□ -1.04
HDAC6-232ENST00000489053 NECTIN3Q9NQS3 549 aa8.54□□□□□ -1.04
HDAC6-232ENST00000489053 SDAD1Q9NVU7 687 aaKnown RBP eCLIP8.54□□□□□ -1.04
HDAC6-232ENST00000489053 NMRK1Q9NWW6 199 aa8.54□□□□□ -1.04
HDAC6-232ENST00000489053 LYARQ9NX58 379 aaKnown RBP8.54□□□□□ -1.04
HDAC6-232ENST00000489053 PSMC3IPQ9P2W1 217 aaPredicted RBP8.54□□□□□ -1.04
HDAC6-232ENST00000489053 SEC14L3Q9UDX4 400 aa8.54□□□□□ -1.04
HDAC6-232ENST00000489053 DAPP1Q9UN19 280 aa8.54□□□□□ -1.04
HDAC6-232ENST00000489053 ASB1Q9Y576 335 aa8.54□□□□□ -1.04
HDAC6-232ENST00000489053 RELNP78509 3460 aa8.54□□□□□ -1.04
HDAC6-232ENST00000489053 PCSK5Q92824 1860 aa8.53□□□□□ -1.04
HDAC6-232ENST00000489053 IGKV3D-11A0A0A0MRZ8 115 aa8.53□□□□□ -1.04
HDAC6-232ENST00000489053 TRGV8A0A0C4DH27 118 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms