RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 RGS18Q9NS28 235 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 POT1Q9NUX5 634 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 CD274Q9NZQ7 290 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 SLAMF8Q9P0V8 285 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 WNT16Q9UBV4 365 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 RAPGEFL1Q9UHV5 662 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 GNPTGQ9UJJ9 305 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 ACSL5Q9ULC5 683 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 NDRG2Q9UN36 371 aaKnown RBP4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 TESMINQ9Y4I5 508 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 KCTD3Q9Y597 815 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 COL2A1P02458 1487 aaPredicted RBP4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 RANBP2P49792 3224 aaKnown RBP4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 FRMPD3Q5JV73 1810 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 EDDM13A0A1B0GTR0 161 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 A0A1W2PPQ1 181 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 TRBC2A0A5B9 178 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 FAM92AA1XBS5 289 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 METTL21EPA6NDL7 271 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 ZNF487B1APH4 448 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 NPIPA7E9PJI5 369 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 TMX2-CTNND1H3BSU7 103 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 TFECO14948 347 aaPredicted RBP4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 LDOC1O95751 146 aaPredicted RBP4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 CH25HO95992 272 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 MT-ND2P03891 347 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 OR52Z1P0C646 297 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 SPATA31C1P0DKV0 1188 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 NPIPA8P0DM63 369 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 IFI30P13284 250 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 CCL5P13501 91 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 EPORP19235 508 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 OGNP20774 298 aaKnown RBP4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 CEBPGP53567 150 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 BCAT1P54687 386 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 ARSFP54793 590 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 UCP3P55916 312 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 ZNF91Q05481 1191 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 SF3A3Q12874 501 aaKnown RBP eCLIP4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 MAB21L1Q13394 359 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 SNTB2Q13425 540 aaKnown RBP4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 TDGQ13569 410 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 ALCAMQ13740 583 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 TNFAIP1Q13829 316 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 TOMM34Q15785 309 aaPredicted RBP4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 PDZK1Q5T2W1 519 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 LCE2CQ5TA81 110 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 ARHGAP40Q5TG30 622 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 ADNP2Q6IQ32 1131 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 BMP8AQ7Z5Y6 402 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 VTCN1Q7Z7D3 282 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 NT5DC3Q86UY8 548 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 METTL4Q8N3J2 472 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 MREGQ8N565 214 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 OR4A15Q8NGL6 344 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 OR9A2Q8NGT5 310 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 OR2T3Q8NH03 318 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 C9orf43Q8TAL5 461 aaPredicted RBP4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 SNX33Q8WV41 574 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 FAM151AQ8WW52 585 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 RLN3Q8WXF3 142 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 CORO2AQ92828 525 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 PNKPQ96T60 521 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 FERMT1Q9BQL6 677 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 C2orf88Q9BSF0 95 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 PIMREGQ9BSJ6 248 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 IFT27Q9BW83 186 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 ANGPTL4Q9BY76 406 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 OSBPL8Q9BZF1 889 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 OR52A5Q9H2C5 316 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 CCNB1IP1Q9NPC3 277 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 IL1RAPQ9NPH3 570 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 SDHAF2Q9NX18 166 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 SH3BP4Q9P0V3 963 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 STOML1Q9UBI4 398 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 CDC42EP3Q9UKI2 254 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 UTS2RQ9UKP6 389 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 DAPP1Q9UN19 280 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 HYOU1Q9Y4L1 999 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 MRPS18BQ9Y676 258 aaKnown RBP4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 COPG1Q9Y678 874 aaKnown RBP4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 MYH2Q9UKX2 1941 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 ATRNL1Q5VV63 1379 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 MYO5AQ9Y4I1 1855 aaKnown RBP4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 CCL15-CCL14A0A0B4J2E2 113 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 FAM25AB3EWG3 89 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 FAM25CB3EWG5 89 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 FAM25GB3EWG6 89 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 TCP10L2B9ZVM9 353 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 H7C4K7 107 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 ZNF701M0R085 212 aaPredicted RBP4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 KPNA4O00629 521 aaPredicted RBP4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 CCSO14618 274 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 PRRG1O14668 218 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 PRAMEF2O60811 474 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 MT-ATP6P00846 226 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 OAS1P00973 400 aaKnown RBP4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 SERPING1P05155 500 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 HMBSP08397 361 aa4.59□□□□□ -1.67
CCDC88A-209ENST00000456975 C1SP09871 688 aa4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms