RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 TMEM214Q6NUQ4 689 aaKnown RBP13.55□□□□□ -0.24
USP39-220ENST00000613444 MCATQ8IVS2 390 aaKnown RBP13.55□□□□□ -0.24
USP39-220ENST00000613444 OR6C4Q8NGE1 309 aa13.55□□□□□ -0.24
USP39-220ENST00000613444 DNAJB14Q8TBM8 379 aa13.55□□□□□ -0.24
USP39-220ENST00000613444 RERGQ96A58 199 aaPredicted RBP13.55□□□□□ -0.24
USP39-220ENST00000613444 TMEM125Q96AQ2 219 aa13.55□□□□□ -0.24
USP39-220ENST00000613444 MIEF2Q96C03 454 aa13.55□□□□□ -0.24
USP39-220ENST00000613444 MTERF3Q96E29 417 aa13.55□□□□□ -0.24
USP39-220ENST00000613444 AHCYL2Q96HN2 611 aaKnown RBP13.55□□□□□ -0.24
USP39-220ENST00000613444 ZNF285Q96NJ3 590 aa13.55□□□□□ -0.24
USP39-220ENST00000613444 CGREF1Q99674 301 aa13.55□□□□□ -0.24
USP39-220ENST00000613444 DUSP26Q9BV47 211 aa13.55□□□□□ -0.24
USP39-220ENST00000613444 GTPBP2Q9BX10 602 aaKnown RBP13.55□□□□□ -0.24
USP39-220ENST00000613444 NANOGQ9H9S0 305 aa13.55□□□□□ -0.24
USP39-220ENST00000613444 FAM120CQ9NX05 1096 aaKnown RBP13.55□□□□□ -0.24
USP39-220ENST00000613444 TBX19O60806 448 aa13.54□□□□□ -0.24
USP39-220ENST00000613444 KCNH1O95259 989 aa13.54□□□□□ -0.24
USP39-220ENST00000613444 FAM58BPP0C7Q3 252 aa13.54□□□□□ -0.24
USP39-220ENST00000613444 DDCP20711 480 aa13.54□□□□□ -0.24
USP39-220ENST00000613444 CERS1P27544 350 aa13.54□□□□□ -0.24
USP39-220ENST00000613444 HNRNPFP52597 415 aaKnown RBP13.54□□□□□ -0.24
USP39-220ENST00000613444 VSX2P58304 361 aaPredicted RBP13.54□□□□□ -0.24
USP39-220ENST00000613444 SLAMF1Q13291 335 aa13.54□□□□□ -0.24
USP39-220ENST00000613444 SQSTM1Q13501 440 aa13.54□□□□□ -0.24
USP39-220ENST00000613444 MUM1Q2TAK8 710 aa13.54□□□□□ -0.24
USP39-220ENST00000613444 PROX2Q3B8N5 592 aa13.54□□□□□ -0.24
USP39-220ENST00000613444 PRMT9Q6P2P2 845 aa13.54□□□□□ -0.24
USP39-220ENST00000613444 CYB5D1Q6P9G0 228 aa13.54□□□□□ -0.24
USP39-220ENST00000613444 WDR74Q6RFH5 385 aaPredicted RBP13.54□□□□□ -0.24
USP39-220ENST00000613444 USP53Q70EK8 1073 aa13.54□□□□□ -0.24
USP39-220ENST00000613444 CARFQ8N187 725 aa13.54□□□□□ -0.24
USP39-220ENST00000613444 CSNK1A1LQ8N752 337 aa13.54□□□□□ -0.24
USP39-220ENST00000613444 RNF148Q8N7C7 305 aa13.54□□□□□ -0.24
USP39-220ENST00000613444 UCN3Q969E3 161 aa13.54□□□□□ -0.24
USP39-220ENST00000613444 BHLHE41Q9C0J9 482 aaPredicted RBP13.54□□□□□ -0.24
USP39-220ENST00000613444 ADA2Q9NZK5 511 aa13.54□□□□□ -0.24
USP39-220ENST00000613444 ASCC3Q8N3C0 2202 aaKnown RBP13.54□□□□□ -0.24
USP39-220ENST00000613444 A0A096LPI6 279 aa13.54□□□□□ -0.24
USP39-220ENST00000613444 ZSCAN9O15535 394 aaPredicted RBP13.54□□□□□ -0.24
USP39-220ENST00000613444 MGRN1O60291 552 aa13.54□□□□□ -0.24
USP39-220ENST00000613444 EIF2S1P05198 315 aaKnown RBP13.54□□□□□ -0.24
USP39-220ENST00000613444 RPL3P39023 403 aaKnown RBP13.54□□□□□ -0.24
USP39-220ENST00000613444 BTN3A2P78410 334 aa13.54□□□□□ -0.24
USP39-220ENST00000613444 PRTGQ2VWP7 1150 aa13.54□□□□□ -0.24
USP39-220ENST00000613444 GTDC1Q4AE62 458 aa13.54□□□□□ -0.24
USP39-220ENST00000613444 RABL3Q5HYI8 236 aa13.54□□□□□ -0.24
USP39-220ENST00000613444 ZC3H12BQ5HYM0 836 aaKnown RBP13.54□□□□□ -0.24
USP39-220ENST00000613444 C6orf10Q5SRN2 563 aa13.54□□□□□ -0.24
USP39-220ENST00000613444 DBX2Q6ZNG2 339 aa13.54□□□□□ -0.24
USP39-220ENST00000613444 R3HCC1LQ7Z5L2 792 aaKnown RBP13.54□□□□□ -0.24
USP39-220ENST00000613444 PLXDC1Q8IUK5 500 aa13.54□□□□□ -0.24
USP39-220ENST00000613444 CLECL1Q8IZS7 167 aa13.54□□□□□ -0.24
USP39-220ENST00000613444 ZNF764Q96H86 408 aaPredicted RBP13.54□□□□□ -0.24
USP39-220ENST00000613444 ITCHQ96J02 903 aa13.54□□□□□ -0.24
USP39-220ENST00000613444 PRPF18Q99633 342 aaKnown RBP13.54□□□□□ -0.24
USP39-220ENST00000613444 RMND5AQ9H871 391 aa13.54□□□□□ -0.24
USP39-220ENST00000613444 SH3BP4Q9P0V3 963 aa13.54□□□□□ -0.24
USP39-220ENST00000613444 GMPR2Q9P2T1 348 aaKnown RBP13.54□□□□□ -0.24
USP39-220ENST00000613444 POMPQ9Y244 141 aa13.54□□□□□ -0.24
USP39-220ENST00000613444 ATG4BQ9Y4P1 393 aa13.54□□□□□ -0.24
USP39-220ENST00000613444 PCDHB14Q9Y5E9 798 aa13.54□□□□□ -0.24
USP39-220ENST00000613444 PRSS51A0A1B0GVH4 220 aa13.53□□□□□ -0.24
USP39-220ENST00000613444 KHNYNO15037 678 aaKnown RBP13.53□□□□□ -0.24
USP39-220ENST00000613444 SRPX2O60687 465 aaPredicted RBP13.53□□□□□ -0.24
USP39-220ENST00000613444 ERN1O75460 977 aaKnown RBP13.53□□□□□ -0.24
USP39-220ENST00000613444 ZBTB11O95625 1053 aaPredicted RBP13.53□□□□□ -0.24
USP39-220ENST00000613444 TGM3Q08188 693 aa13.53□□□□□ -0.24
USP39-220ENST00000613444 SELPLGQ14242 412 aa13.53□□□□□ -0.24
USP39-220ENST00000613444 SLC9A5Q14940 896 aa13.53□□□□□ -0.24
USP39-220ENST00000613444 KPNB1Q14974 876 aaKnown RBP13.53□□□□□ -0.24
USP39-220ENST00000613444 HEPACAMQ14CZ8 416 aa13.53□□□□□ -0.24
USP39-220ENST00000613444 TMPRSS9Q7Z410 1059 aa13.53□□□□□ -0.24
USP39-220ENST00000613444 NET1Q7Z628 596 aaPredicted RBP13.53□□□□□ -0.24
USP39-220ENST00000613444 TICAM1Q8IUC6 712 aa13.53□□□□□ -0.24
USP39-220ENST00000613444 DNAJB8Q8NHS0 232 aa13.53□□□□□ -0.24
USP39-220ENST00000613444 ZCCHC10Q8TBK6 192 aa13.53□□□□□ -0.24
USP39-220ENST00000613444 KLHL6Q8WZ60 621 aa13.53□□□□□ -0.24
USP39-220ENST00000613444 PPCDCQ96CD2 204 aa13.53□□□□□ -0.24
USP39-220ENST00000613444 CCDC124Q96CT7 223 aaKnown RBP13.53□□□□□ -0.24
USP39-220ENST00000613444 CCDC115Q96NT0 180 aa13.53□□□□□ -0.24
USP39-220ENST00000613444 ANKRD27Q96NW4 1050 aa13.53□□□□□ -0.24
USP39-220ENST00000613444 NUDT22Q9BRQ3 303 aa13.53□□□□□ -0.24
USP39-220ENST00000613444 STARD5Q9NSY2 213 aa13.53□□□□□ -0.24
USP39-220ENST00000613444 KLHL3Q9UH77 587 aa13.53□□□□□ -0.24
USP39-220ENST00000613444 BTNL2Q9UIR0 455 aa13.53□□□□□ -0.24
USP39-220ENST00000613444 A0A1W2PQM1 296 aa13.52□□□□□ -0.24
USP39-220ENST00000613444 A0A1W2PR48 441 aa13.52□□□□□ -0.24
USP39-220ENST00000613444 LNP1A1A4G5 178 aa13.52□□□□□ -0.24
USP39-220ENST00000613444 CPED1A4D0V7 1026 aa13.52□□□□□ -0.24
USP39-220ENST00000613444 RNASET2O00584 256 aaKnown RBP13.52□□□□□ -0.24
USP39-220ENST00000613444 DNAJB6O75190 326 aa13.52□□□□□ -0.24
USP39-220ENST00000613444 ZNF883P0CG24 379 aa13.52□□□□□ -0.24
USP39-220ENST00000613444 CKMT1AP12532 417 aa13.52□□□□□ -0.24
USP39-220ENST00000613444 EFNA1P20827 205 aaPredicted RBP13.52□□□□□ -0.24
USP39-220ENST00000613444 MSX2P35548 267 aaPredicted RBP13.52□□□□□ -0.24
USP39-220ENST00000613444 MS4A2Q01362 244 aa13.52□□□□□ -0.24
USP39-220ENST00000613444 RUNDC3AQ59EK9 446 aa13.52□□□□□ -0.24
USP39-220ENST00000613444 WASHC2DQ5SRD0 308 aa13.52□□□□□ -0.24
USP39-220ENST00000613444 NDUFAF5Q5TEU4 345 aa13.52□□□□□ -0.24
USP39-220ENST00000613444 DNAJC14Q6Y2X3 702 aaPredicted RBP13.52□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms