RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 SPTBN1Q01082 2364 aaKnown RBP14.12□□□□□ -0.15
VPS39-210ENST00000568357 IGKV3D-11A0A0A0MRZ8 115 aa14.11□□□□□ -0.15
VPS39-210ENST00000568357 A8MUI8 341 aa14.11□□□□□ -0.15
VPS39-210ENST00000568357 PSMD12O00232 456 aaPredicted RBP14.11□□□□□ -0.15
VPS39-210ENST00000568357 RTCAO00442 366 aaKnown RBP14.11□□□□□ -0.15
VPS39-210ENST00000568357 OR7A17O14581 309 aa14.11□□□□□ -0.15
VPS39-210ENST00000568357 B3GALT2O43825 422 aa14.11□□□□□ -0.15
VPS39-210ENST00000568357 CERS1P27544 350 aa14.11□□□□□ -0.15
VPS39-210ENST00000568357 EEF1DP29692 281 aaKnown RBP14.11□□□□□ -0.15
VPS39-210ENST00000568357 HNRNPFP52597 415 aaKnown RBP14.11□□□□□ -0.15
VPS39-210ENST00000568357 MTTPP55157 894 aa14.11□□□□□ -0.15
VPS39-210ENST00000568357 OR4D2P58180 307 aa14.11□□□□□ -0.15
VPS39-210ENST00000568357 BTBD16Q32M84 506 aa14.11□□□□□ -0.15
VPS39-210ENST00000568357 LIPJQ5W064 366 aa14.11□□□□□ -0.15
VPS39-210ENST00000568357 METTL2BQ6P1Q9 378 aaKnown RBP14.11□□□□□ -0.15
VPS39-210ENST00000568357 PAPD4Q6PIY7 484 aaKnown RBP14.11□□□□□ -0.15
VPS39-210ENST00000568357 QSOX2Q6ZRP7 698 aa14.11□□□□□ -0.15
VPS39-210ENST00000568357 MYLK4Q86YV6 388 aaPredicted RBP14.11□□□□□ -0.15
VPS39-210ENST00000568357 CISD2Q8N5K1 135 aaKnown RBP14.11□□□□□ -0.15
VPS39-210ENST00000568357 TMEM52Q8NDY8 209 aa14.11□□□□□ -0.15
VPS39-210ENST00000568357 HUS1BQ8NHY5 278 aa14.11□□□□□ -0.15
VPS39-210ENST00000568357 PPP4R1Q8TF05 950 aa14.11□□□□□ -0.15
VPS39-210ENST00000568357 SNRNP40Q96DI7 357 aaKnown RBP14.11□□□□□ -0.15
VPS39-210ENST00000568357 MTBPQ96DY7 904 aa14.11□□□□□ -0.15
VPS39-210ENST00000568357 SERINC2Q96SA4 455 aa14.11□□□□□ -0.15
VPS39-210ENST00000568357 ILKAPQ9H0C8 392 aaPredicted RBP14.11□□□□□ -0.15
VPS39-210ENST00000568357 MRPL46Q9H2W6 279 aaKnown RBP14.11□□□□□ -0.15
VPS39-210ENST00000568357 OR51B5Q9H339 312 aa14.11□□□□□ -0.15
VPS39-210ENST00000568357 EPS8L2Q9H6S3 715 aa14.11□□□□□ -0.15
VPS39-210ENST00000568357 NOL11Q9H8H0 719 aaKnown RBP14.11□□□□□ -0.15
VPS39-210ENST00000568357 ANKZF1Q9H8Y5 726 aa14.11□□□□□ -0.15
VPS39-210ENST00000568357 PRDM9Q9NQV7 894 aa14.11□□□□□ -0.15
VPS39-210ENST00000568357 TMEM216Q9P0N5 145 aa14.11□□□□□ -0.15
VPS39-210ENST00000568357 FETUBQ9UGM5 382 aa14.11□□□□□ -0.15
VPS39-210ENST00000568357 CLDN16Q9Y5I7 305 aa14.11□□□□□ -0.15
VPS39-210ENST00000568357 FOXO6A8MYZ6 492 aa14.1□□□□□ -0.15
VPS39-210ENST00000568357 H0YIV9 168 aa14.1□□□□□ -0.15
VPS39-210ENST00000568357 STX16-NPEPL1H3BU86 382 aa14.1□□□□□ -0.15
VPS39-210ENST00000568357 SAP18O00422 153 aaKnown RBP14.1□□□□□ -0.15
VPS39-210ENST00000568357 CYR61O00622 381 aa14.1□□□□□ -0.15
VPS39-210ENST00000568357 STX16O14662 325 aa14.1□□□□□ -0.15
VPS39-210ENST00000568357 SHBGP04278 402 aa14.1□□□□□ -0.15
VPS39-210ENST00000568357 ATP5A1P25705 553 aaKnown RBP14.1□□□□□ -0.15
VPS39-210ENST00000568357 TNFRSF8P28908 595 aa14.1□□□□□ -0.15
VPS39-210ENST00000568357 HPDP32754 393 aaPredicted RBP14.1□□□□□ -0.15
VPS39-210ENST00000568357 LIM2P55344 173 aa14.1□□□□□ -0.15
VPS39-210ENST00000568357 RAB38P57729 211 aa14.1□□□□□ -0.15
VPS39-210ENST00000568357 TGM3Q08188 693 aa14.1□□□□□ -0.15
VPS39-210ENST00000568357 DDX39BQ13838 428 aaKnown RBP14.1□□□□□ -0.15
VPS39-210ENST00000568357 CPSF6Q16630 551 aaKnown RBP eCLIP14.1□□□□□ -0.15
VPS39-210ENST00000568357 H3F3CQ6NXT2 135 aa14.1□□□□□ -0.15
VPS39-210ENST00000568357 ZNF793Q6ZN11 406 aa14.1□□□□□ -0.15
VPS39-210ENST00000568357 CHSY3Q70JA7 882 aa14.1□□□□□ -0.15
VPS39-210ENST00000568357 RPS27LQ71UM5 84 aaKnown RBP14.1□□□□□ -0.15
VPS39-210ENST00000568357 L3MBTL4Q8NA19 623 aa14.1□□□□□ -0.15
VPS39-210ENST00000568357 OR52B6Q8NGF0 335 aa14.1□□□□□ -0.15
VPS39-210ENST00000568357 M1APQ8TC57 530 aa14.1□□□□□ -0.15
VPS39-210ENST00000568357 MZB1Q8WU39 189 aa14.1□□□□□ -0.15
VPS39-210ENST00000568357 CMTM7Q96FZ5 175 aa14.1□□□□□ -0.15
VPS39-210ENST00000568357 CNDP1Q96KN2 507 aa14.1□□□□□ -0.15
VPS39-210ENST00000568357 MAGEB10Q96LZ2 347 aaPredicted RBP14.1□□□□□ -0.15
VPS39-210ENST00000568357 NSUN5Q96P11 429 aaKnown RBP14.1□□□□□ -0.15
VPS39-210ENST00000568357 KCNC2Q96PR1 638 aa14.1□□□□□ -0.15
VPS39-210ENST00000568357 CDK15Q96Q40 435 aa14.1□□□□□ -0.15
VPS39-210ENST00000568357 MTERF1Q99551 399 aaKnown RBP14.1□□□□□ -0.15
VPS39-210ENST00000568357 LPAR4Q99677 370 aa14.1□□□□□ -0.15
VPS39-210ENST00000568357 TBCDQ9BTW9 1192 aa14.1□□□□□ -0.15
VPS39-210ENST00000568357 SORBS1Q9BX66 1292 aaKnown RBP14.1□□□□□ -0.15
VPS39-210ENST00000568357 ZBTB26Q9HCK0 441 aa14.1□□□□□ -0.15
VPS39-210ENST00000568357 STMN3Q9NZ72 180 aa14.1□□□□□ -0.15
VPS39-210ENST00000568357 KCMF1Q9P0J7 381 aa14.1□□□□□ -0.15
VPS39-210ENST00000568357 TBK1Q9UHD2 729 aa14.1□□□□□ -0.15
VPS39-210ENST00000568357 TMCO1Q9UM00 188 aa14.1□□□□□ -0.15
VPS39-210ENST00000568357 DAPP1Q9UN19 280 aa14.1□□□□□ -0.15
VPS39-210ENST00000568357 TSC22D4Q9Y3Q8 395 aa14.1□□□□□ -0.15
VPS39-210ENST00000568357 PCDHGA10Q9Y5H3 936 aa14.1□□□□□ -0.15
VPS39-210ENST00000568357 A0A088AWK7 358 aa14.09□□□□□ -0.15
VPS39-210ENST00000568357 IQANK1A0A1B0GTG1 560 aa14.09□□□□□ -0.15
VPS39-210ENST00000568357 TCRBV16S1A1N1A0A5B0 115 aa14.09□□□□□ -0.15
VPS39-210ENST00000568357 A8MUA0 341 aa14.09□□□□□ -0.15
VPS39-210ENST00000568357 TGFBR3LH3BV60 316 aa14.09□□□□□ -0.15
VPS39-210ENST00000568357 GOLGA8RI6L899 631 aa14.09□□□□□ -0.15
VPS39-210ENST00000568357 PPP6CO00743 305 aa14.09□□□□□ -0.15
VPS39-210ENST00000568357 UGDHO60701 494 aa14.09□□□□□ -0.15
VPS39-210ENST00000568357 SMIM24O75264 130 aa14.09□□□□□ -0.15
VPS39-210ENST00000568357 WDPCPO95876 746 aa14.09□□□□□ -0.15
VPS39-210ENST00000568357 F10P00742 488 aa14.09□□□□□ -0.15
VPS39-210ENST00000568357 ZNF10P21506 573 aaPredicted RBP14.09□□□□□ -0.15
VPS39-210ENST00000568357 SERPINB1P30740 379 aa14.09□□□□□ -0.15
VPS39-210ENST00000568357 PIK3CBP42338 1070 aa14.09□□□□□ -0.15
VPS39-210ENST00000568357 PIK3CGP48736 1102 aa14.09□□□□□ -0.15
VPS39-210ENST00000568357 NEK2P51955 445 aa14.09□□□□□ -0.15
VPS39-210ENST00000568357 SLC26A5P58743 744 aa14.09□□□□□ -0.15
VPS39-210ENST00000568357 AP2B1P63010 937 aa14.09□□□□□ -0.15
VPS39-210ENST00000568357 EXT1Q16394 746 aa14.09□□□□□ -0.15
VPS39-210ENST00000568357 TMEM35AQ53FP2 167 aa14.09□□□□□ -0.15
VPS39-210ENST00000568357 DEPDC1Q5TB30 811 aa14.09□□□□□ -0.15
VPS39-210ENST00000568357 KHDRBS2Q5VWX1 349 aaKnown RBP14.09□□□□□ -0.15
VPS39-210ENST00000568357 FCRLBQ6BAA4 426 aa14.09□□□□□ -0.15
VPS39-210ENST00000568357 SCUBE1Q8IWY4 988 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms