RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 SLC26A1Q9H2B4 701 aa16.31■□□□□ 0.2
CLN3-217ENST00000565354 SSU72Q9NP77 194 aaKnown RBP16.31■□□□□ 0.2
CLN3-217ENST00000565354 C14orf105Q9NVL8 296 aa16.31■□□□□ 0.2
CLN3-217ENST00000565354 TRPS1Q9UHF7 1281 aa16.31■□□□□ 0.2
CLN3-217ENST00000565354 SNX6Q9UNH7 406 aa16.31■□□□□ 0.2
CLN3-217ENST00000565354 A0A0G2JN53 185 aa16.3■□□□□ 0.2
CLN3-217ENST00000565354 A1L4Q6 167 aa16.3■□□□□ 0.2
CLN3-217ENST00000565354 TYROBPO43914 113 aa16.3■□□□□ 0.2
CLN3-217ENST00000565354 GALR3O60755 368 aaPredicted RBP16.3■□□□□ 0.2
CLN3-217ENST00000565354 B3GALT4O96024 378 aa16.3■□□□□ 0.2
CLN3-217ENST00000565354 ZGLP1P0C6A0 271 aa16.3■□□□□ 0.2
CLN3-217ENST00000565354 H2AFXP16104 143 aaPredicted RBP16.3■□□□□ 0.2
CLN3-217ENST00000565354 HNRNPH1P31943 449 aaKnown RBP16.3■□□□□ 0.2
CLN3-217ENST00000565354 PIK3CBP42338 1070 aa16.3■□□□□ 0.2
CLN3-217ENST00000565354 PKNOX1P55347 436 aa16.3■□□□□ 0.2
CLN3-217ENST00000565354 HYAL2Q12891 473 aa16.3■□□□□ 0.2
CLN3-217ENST00000565354 SYT16Q17RD7 645 aa16.3■□□□□ 0.2
CLN3-217ENST00000565354 GGTA1PQ4G0N0 100 aa16.3■□□□□ 0.2
CLN3-217ENST00000565354 VWA2Q5GFL6 755 aa16.3■□□□□ 0.2
CLN3-217ENST00000565354 FAM69BQ5VUD6 431 aa16.3■□□□□ 0.2
CLN3-217ENST00000565354 APLFQ8IW19 511 aaPredicted RBP16.3■□□□□ 0.2
CLN3-217ENST00000565354 AFAP1L2Q8N4X5 818 aa16.3■□□□□ 0.2
CLN3-217ENST00000565354 AMER3Q8N944 861 aa16.3■□□□□ 0.2
CLN3-217ENST00000565354 OR2L5Q8NG80 312 aa16.3■□□□□ 0.2
CLN3-217ENST00000565354 OR51Q1Q8NH59 317 aa16.3■□□□□ 0.2
CLN3-217ENST00000565354 PPP1R14CQ8TAE6 165 aa16.3■□□□□ 0.2
CLN3-217ENST00000565354 MS4A6EQ96DS6 147 aa16.3■□□□□ 0.2
CLN3-217ENST00000565354 F2RL3Q96RI0 385 aa16.3■□□□□ 0.2
CLN3-217ENST00000565354 CRB3Q9BUF7 120 aa16.3■□□□□ 0.2
CLN3-217ENST00000565354 MS4A8Q9BY19 250 aa16.3■□□□□ 0.2
CLN3-217ENST00000565354 ROGDIQ9GZN7 287 aa16.3■□□□□ 0.2
CLN3-217ENST00000565354 GSTO2Q9H4Y5 243 aa16.3■□□□□ 0.2
CLN3-217ENST00000565354 TMBIM4Q9HC24 238 aa16.3■□□□□ 0.2
CLN3-217ENST00000565354 MID1IP1Q9NPA3 183 aa16.3■□□□□ 0.2
CLN3-217ENST00000565354 DMRT3Q9NQL9 472 aa16.3■□□□□ 0.2
CLN3-217ENST00000565354 PSMD12O00232 456 aaPredicted RBP16.29■□□□□ 0.2
CLN3-217ENST00000565354 PPP6CO00743 305 aa16.29■□□□□ 0.2
CLN3-217ENST00000565354 TM9SF1O15321 606 aa16.29■□□□□ 0.2
CLN3-217ENST00000565354 RECKO95980 971 aa16.29■□□□□ 0.2
CLN3-217ENST00000565354 IGHEP01854 428 aa16.29■□□□□ 0.2
CLN3-217ENST00000565354 KRT6AP02538 564 aa16.29■□□□□ 0.2
CLN3-217ENST00000565354 KRT6BP04259 564 aa16.29■□□□□ 0.2
CLN3-217ENST00000565354 NEFHP12036 1026 aa16.29■□□□□ 0.2
CLN3-217ENST00000565354 ALDH3A1P30838 453 aa16.29■□□□□ 0.2
CLN3-217ENST00000565354 KRT6CP48668 564 aa16.29■□□□□ 0.2
CLN3-217ENST00000565354 RPS13P62277 151 aaKnown RBP16.29■□□□□ 0.2
CLN3-217ENST00000565354 SNRPNP63162 240 aaKnown RBP16.29■□□□□ 0.2
CLN3-217ENST00000565354 OLR1P78380 273 aa16.29■□□□□ 0.2
CLN3-217ENST00000565354 IL10RAQ13651 578 aa16.29■□□□□ 0.2
CLN3-217ENST00000565354 SSPNQ14714 243 aa16.29■□□□□ 0.2
CLN3-217ENST00000565354 UGT8Q16880 541 aa16.29■□□□□ 0.2
CLN3-217ENST00000565354 TMEM35AQ53FP2 167 aa16.29■□□□□ 0.2
CLN3-217ENST00000565354 SGO1Q5FBB7 561 aa16.29■□□□□ 0.2
CLN3-217ENST00000565354 C10orf62Q5T681 223 aaPredicted RBP16.29■□□□□ 0.2
CLN3-217ENST00000565354 FRG2Q64ET8 278 aa16.29■□□□□ 0.2
CLN3-217ENST00000565354 LETMD1Q6P1Q0 360 aa16.29■□□□□ 0.2
CLN3-217ENST00000565354 PDSS2Q86YH6 399 aa16.29■□□□□ 0.2
CLN3-217ENST00000565354 RNF175Q8N4F7 328 aa16.29■□□□□ 0.2
CLN3-217ENST00000565354 CDYL2Q8N8U2 506 aa16.29■□□□□ 0.2
CLN3-217ENST00000565354 SELENOMQ8WWX9 145 aa16.29■□□□□ 0.2
CLN3-217ENST00000565354 PEX11GQ96HA9 241 aa16.29■□□□□ 0.2
CLN3-217ENST00000565354 KCNC2Q96PR1 638 aa16.29■□□□□ 0.2
CLN3-217ENST00000565354 FRG2BQ96QU4 278 aa16.29■□□□□ 0.2
CLN3-217ENST00000565354 MECRQ9BV79 373 aa16.29■□□□□ 0.2
CLN3-217ENST00000565354 OR51B5Q9H339 312 aa16.29■□□□□ 0.2
CLN3-217ENST00000565354 TSC22D4Q9Y3Q8 395 aa16.29■□□□□ 0.2
CLN3-217ENST00000565354 FER1L5A0AVI2 2057 aa16.29■□□□□ 0.2
CLN3-217ENST00000565354 VSTM2BA6NLU5 285 aa16.28■□□□□ 0.2
CLN3-217ENST00000565354 MAGEB17A8MXT2 336 aa16.28■□□□□ 0.2
CLN3-217ENST00000565354 H3BQF6 201 aa16.28■□□□□ 0.2
CLN3-217ENST00000565354 SAP18O00422 153 aaKnown RBP16.28■□□□□ 0.2
CLN3-217ENST00000565354 PEX12O00623 359 aa16.28■□□□□ 0.2
CLN3-217ENST00000565354 B3GALT2O43825 422 aa16.28■□□□□ 0.2
CLN3-217ENST00000565354 CNOT3O75175 753 aaKnown RBP16.28■□□□□ 0.2
CLN3-217ENST00000565354 KLF7O75840 302 aaPredicted RBP16.28■□□□□ 0.2
CLN3-217ENST00000565354 DNAJB5O75953 348 aa16.28■□□□□ 0.2
CLN3-217ENST00000565354 ZWINTO95229 277 aa16.28■□□□□ 0.2
CLN3-217ENST00000565354 HEXBP07686 556 aa16.28■□□□□ 0.2
CLN3-217ENST00000565354 SMIM10L1P0DMW3 83 aa16.28■□□□□ 0.2
CLN3-217ENST00000565354 PTX3P26022 381 aaPredicted RBP16.28■□□□□ 0.2
CLN3-217ENST00000565354 SSR2P43308 183 aa16.28■□□□□ 0.2
CLN3-217ENST00000565354 XCR1P46094 333 aa16.28■□□□□ 0.2
CLN3-217ENST00000565354 NEK2P51955 445 aa16.28■□□□□ 0.2
CLN3-217ENST00000565354 FOXL2P58012 376 aa16.28■□□□□ 0.2
CLN3-217ENST00000565354 MAGOHP61326 146 aaKnown RBP16.28■□□□□ 0.2
CLN3-217ENST00000565354 KLC1Q07866 573 aa16.28■□□□□ 0.2
CLN3-217ENST00000565354 AP5B1Q2VPB7 878 aa16.28■□□□□ 0.2
CLN3-217ENST00000565354 ADPRMQ3LIE5 342 aa16.28■□□□□ 0.2
CLN3-217ENST00000565354 MINDY4Q4G0A6 757 aa16.28■□□□□ 0.2
CLN3-217ENST00000565354 TNFAIP8L3Q5GJ75 292 aa16.28■□□□□ 0.2
CLN3-217ENST00000565354 KHDRBS2Q5VWX1 349 aaKnown RBP16.28■□□□□ 0.2
CLN3-217ENST00000565354 FRMD7Q6ZUT3 714 aa16.28■□□□□ 0.2
CLN3-217ENST00000565354 ANKRD42Q8N9B4 389 aa16.28■□□□□ 0.2
CLN3-217ENST00000565354 OR5T3Q8NGG3 340 aa16.28■□□□□ 0.2
CLN3-217ENST00000565354 WDR20Q8TBZ3 569 aa16.28■□□□□ 0.2
CLN3-217ENST00000565354 METTL6Q8TCB7 284 aa16.28■□□□□ 0.2
CLN3-217ENST00000565354 THAP4Q8WY91 577 aa16.28■□□□□ 0.2
CLN3-217ENST00000565354 SMIM10Q96HG1 83 aa16.28■□□□□ 0.2
CLN3-217ENST00000565354 VPS50Q96JG6 964 aa16.28■□□□□ 0.2
CLN3-217ENST00000565354 SERPINI1Q99574 410 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms