RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 SLAMF1Q13291 335 aa12.16□□□□□ -0.46
CLK3-214ENST00000564096 IL11RAQ14626 422 aa12.16□□□□□ -0.46
CLK3-214ENST00000564096 MMEL1Q495T6 779 aa12.16□□□□□ -0.46
CLK3-214ENST00000564096 TIGD2Q4W5G0 525 aa12.16□□□□□ -0.46
CLK3-214ENST00000564096 COQ5Q5HYK3 327 aa12.16□□□□□ -0.46
CLK3-214ENST00000564096 GK5Q6ZS86 529 aa12.16□□□□□ -0.46
CLK3-214ENST00000564096 MSANTD1Q6ZTZ1 278 aa12.16□□□□□ -0.46
CLK3-214ENST00000564096 YTHDF3Q7Z739 585 aaKnown RBP12.16□□□□□ -0.46
CLK3-214ENST00000564096 B3GNT8Q7Z7M8 397 aa12.16□□□□□ -0.46
CLK3-214ENST00000564096 PPP1R3BQ86XI6 285 aa12.16□□□□□ -0.46
CLK3-214ENST00000564096 TMEM126BQ8IUX1 230 aa12.16□□□□□ -0.46
CLK3-214ENST00000564096 OR9I1Q8NGQ6 314 aa12.16□□□□□ -0.46
CLK3-214ENST00000564096 OR1L3Q8NH93 324 aa12.16□□□□□ -0.46
CLK3-214ENST00000564096 PPCDCQ96CD2 204 aa12.16□□□□□ -0.46
CLK3-214ENST00000564096 SPDL1Q96EA4 605 aa12.16□□□□□ -0.46
CLK3-214ENST00000564096 ZNF764Q96H86 408 aaPredicted RBP12.16□□□□□ -0.46
CLK3-214ENST00000564096 C10orf90Q96M02 699 aa12.16□□□□□ -0.46
CLK3-214ENST00000564096 OR6C1Q96RD1 312 aa12.16□□□□□ -0.46
CLK3-214ENST00000564096 AICDAQ9GZX7 198 aa12.16□□□□□ -0.46
CLK3-214ENST00000564096 REEP4Q9H6H4 257 aa12.16□□□□□ -0.46
CLK3-214ENST00000564096 RMND5AQ9H871 391 aa12.16□□□□□ -0.46
CLK3-214ENST00000564096 LYRM4Q9HD34 91 aa12.16□□□□□ -0.46
CLK3-214ENST00000564096 LHX9Q9NQ69 397 aa12.16□□□□□ -0.46
CLK3-214ENST00000564096 PRDM7Q9NQW5 492 aa12.16□□□□□ -0.46
CLK3-214ENST00000564096 NDE1Q9NXR1 346 aa12.16□□□□□ -0.46
CLK3-214ENST00000564096 CDV3Q9UKY7 258 aaKnown RBP12.16□□□□□ -0.46
CLK3-214ENST00000564096 CLCA2Q9UQC9 943 aa12.16□□□□□ -0.46
CLK3-214ENST00000564096 NAALAD2Q9Y3Q0 740 aa12.16□□□□□ -0.46
CLK3-214ENST00000564096 PCM1Q15154 2024 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 WDFY4Q6ZS81 3184 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 A0A1B0GX78 115 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 BLACEA4D250 179 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 ERICH4A6NGS2 130 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 B4E171 279 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 C4orf51C9J302 202 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 H0YIG0 161 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 ANKRD28O15084 1053 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 CASC3O15234 703 aaKnown RBP12.15□□□□□ -0.46
CLK3-214ENST00000564096 AKAP10O43572 662 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 TMPRSS11DO60235 418 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 LRATO95237 230 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 CBX6O95503 412 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 MT-CO3P00414 261 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 FTH1P19P0C7X4 201 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 SMIM10L1P0DMW3 83 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 COX4I1P13073 169 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 DRD2P14416 443 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 DDCP20711 480 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 CPN2P22792 545 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 S100A3P33764 101 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 TSPAN7P41732 249 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 MXRA7P84157 204 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 TNFRSF17Q02223 184 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 SRSF11Q05519 484 aaKnown RBP12.15□□□□□ -0.46
CLK3-214ENST00000564096 LRRC74AQ0VAA2 488 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 C16orf72Q14CZ0 275 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 FAM174BQ3ZCQ3 159 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 CPTPQ5TA50 214 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 CDCP2Q5VXM1 449 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 FAM71E1Q6IPT2 247 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 PRMT9Q6P2P2 845 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 BLOC1S3Q6QNY0 202 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 ZNF771Q7L3S4 317 aaPredicted RBP12.15□□□□□ -0.46
CLK3-214ENST00000564096 GPR180Q86V85 440 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 TREML1Q86YW5 311 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 KIAA2013Q8IYS2 634 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 NATD1Q8N6N6 113 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 PCYOX1LQ8NBM8 494 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 VPS37AQ8NEZ2 397 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 PROKR1Q8TCW9 393 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 LIN37Q96GY3 246 aaPredicted RBP12.15□□□□□ -0.46
CLK3-214ENST00000564096 SMIM10Q96HG1 83 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 NSL1Q96IY1 281 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 SPRTNQ9H040 489 aaPredicted RBP12.15□□□□□ -0.46
CLK3-214ENST00000564096 ACTL8Q9H568 366 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 PRDM9Q9NQV7 894 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 GIMAP4Q9NUV9 329 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.15□□□□□ -0.46
CLK3-214ENST00000564096 EHD3Q9NZN3 535 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 NDOR1Q9UHB4 597 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 BAIAP2L1Q9UHR4 511 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 LEF1Q9UJU2 399 aaPredicted RBP12.15□□□□□ -0.46
CLK3-214ENST00000564096 MRPS33Q9Y291 106 aaKnown RBP12.15□□□□□ -0.46
CLK3-214ENST00000564096 LOXL2Q9Y4K0 774 aa12.15□□□□□ -0.46
CLK3-214ENST00000564096 GOLGA4Q13439 2230 aaKnown RBP12.15□□□□□ -0.46
CLK3-214ENST00000564096 HEATR5BQ9P2D3 2071 aa12.14□□□□□ -0.47
CLK3-214ENST00000564096 A0A0A6YYC8 382 aaPredicted RBP12.14□□□□□ -0.47
CLK3-214ENST00000564096 C1orf226A1L170 272 aa12.14□□□□□ -0.47
CLK3-214ENST00000564096 ZNF860A6NHJ4 632 aa12.14□□□□□ -0.47
CLK3-214ENST00000564096 I3L1I5 382 aaPredicted RBP12.14□□□□□ -0.47
CLK3-214ENST00000564096 DSCR3O14972 297 aa12.14□□□□□ -0.47
CLK3-214ENST00000564096 POLR1CO15160 346 aaPredicted RBP12.14□□□□□ -0.47
CLK3-214ENST00000564096 CPNE3O75131 537 aaKnown RBP12.14□□□□□ -0.47
CLK3-214ENST00000564096 CSO75390 466 aaKnown RBP12.14□□□□□ -0.47
CLK3-214ENST00000564096 RDH16O75452 317 aa12.14□□□□□ -0.47
CLK3-214ENST00000564096 SCRG1O75711 98 aa12.14□□□□□ -0.47
CLK3-214ENST00000564096 UNC5CO95185 931 aa12.14□□□□□ -0.47
CLK3-214ENST00000564096 PGRP06401 933 aa12.14□□□□□ -0.47
CLK3-214ENST00000564096 FGF5P12034 268 aa12.14□□□□□ -0.47
CLK3-214ENST00000564096 CEACAM1P13688 526 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms