RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 PPP1R8Q12972 351 aaKnown RBP1.43□□□□□ -2.18
USP3-209ENST00000558925 CEACAM7Q14002 265 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 SMC1AQ14683 1233 aaKnown RBP1.43□□□□□ -2.18
USP3-209ENST00000558925 HEPACAMQ14CZ8 416 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 SPHARQ15513 63 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 PTPN14Q15678 1187 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 TOR1AIP1Q5JTV8 583 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 SPANXN4Q5MJ08 99 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 DCAF12Q5T6F0 453 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 ZNF776Q68DI1 518 aaPredicted RBP1.43□□□□□ -2.18
USP3-209ENST00000558925 SLC35E4Q6ICL7 350 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 ZNF790Q6PG37 636 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 BHLHB9Q6PI77 547 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 TRIM65Q6PJ69 517 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 DLEU7Q6UYE1 221 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 MACC1Q6ZN28 852 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 Q6ZSR9 355 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 Q71RC1 249 aaPredicted RBP1.43□□□□□ -2.18
USP3-209ENST00000558925 FCRLAQ7L513 359 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 BNIPLQ7Z465 357 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 NR2C2APQ86WQ0 139 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 CATSPERDQ86XM0 798 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 ERC1Q8IUD2 1116 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 DND1Q8IYX4 353 aaKnown RBP1.43□□□□□ -2.18
USP3-209ENST00000558925 FBXW8Q8N3Y1 598 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 HDDC3Q8N4P3 179 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 TEX26Q8N6G2 289 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 RNF149Q8NC42 400 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 CCDC197Q8NCU1 140 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 TRIM58Q8NG06 486 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 OR5AP2Q8NGF4 316 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 OR13C5Q8NGS8 318 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 OR4L1Q8NH43 312 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 ATP8B4Q8TF62 1192 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 GATAD1Q8WUU5 269 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 SUSD6Q92537 303 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 DYRK2Q92630 601 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 GLYATL1Q969I3 302 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 ESAMQ96AP7 390 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 SLCO4A1Q96BD0 722 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 GIMAP5Q96F15 307 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 PCED1BQ96HM7 432 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 FAM111AQ96PZ2 611 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 TAAR6Q96RI8 345 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 ERGIC2Q96RQ1 377 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 PCDHB18PQ96TA0 734 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 AGPAT1Q99943 283 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 FAM213AQ9BRX8 229 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 NUSAP1Q9BXS6 441 aaKnown RBP1.43□□□□□ -2.18
USP3-209ENST00000558925 TEX13AQ9BXU3 409 aaPredicted RBP1.43□□□□□ -2.18
USP3-209ENST00000558925 LRRC2Q9BYS8 371 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 NACAP1Q9BZK3 213 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 DDX47Q9H0S4 455 aaKnown RBP1.43□□□□□ -2.18
USP3-209ENST00000558925 CXXC4Q9H2H0 198 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 TMEM245Q9H330 911 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 FNDC4Q9H6D8 234 aaPredicted RBP1.43□□□□□ -2.18
USP3-209ENST00000558925 ZDHHC6Q9H6R6 413 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 NGBQ9NPG2 151 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 PPANQ9NQ55 473 aaKnown RBP1.43□□□□□ -2.18
USP3-209ENST00000558925 EXOC1Q9NV70 894 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 FAM118AQ9NWS6 357 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 HPF1Q9NWY4 346 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 TECRQ9NZ01 308 aaKnown RBP1.43□□□□□ -2.18
USP3-209ENST00000558925 TMEM181Q9P2C4 612 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 DBF4Q9UBU7 674 aaPredicted RBP1.43□□□□□ -2.18
USP3-209ENST00000558925 COPS7AQ9UBW8 275 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 CLIP2Q9UDT6 1046 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 FAM153AQ9UHL3 310 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 NARFQ9UHQ1 456 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 KCNG2Q9UJ96 466 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 FBXL4Q9UKA2 621 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 MAN1B1Q9UKM7 699 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 DNPEPQ9ULA0 475 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 GRID1Q9ULK0 1009 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 WDR37Q9Y2I8 494 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 PYGO1Q9Y3Y4 419 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 ATG4BQ9Y4P1 393 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 CLCA3PQ9Y6N3 262 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 NPC1L1Q9UHC9 1359 aa1.43□□□□□ -2.18
USP3-209ENST00000558925 ATP8B3O60423 1300 aa1.42□□□□□ -2.18
USP3-209ENST00000558925 NPHP3Q7Z494 1330 aa1.42□□□□□ -2.18
USP3-209ENST00000558925 KIF26BQ2KJY2 2108 aa1.42□□□□□ -2.18
USP3-209ENST00000558925 A0A087WYN8 130 aa1.42□□□□□ -2.18
USP3-209ENST00000558925 A0A087X002 238 aa1.42□□□□□ -2.18
USP3-209ENST00000558925 TRBV2A0A0J9YWF9 115 aa1.42□□□□□ -2.18
USP3-209ENST00000558925 ATP6AP2A0A1C7CYW4 349 aa1.42□□□□□ -2.18
USP3-209ENST00000558925 FAM172BPA6NC97 362 aa1.42□□□□□ -2.18
USP3-209ENST00000558925 ARHGAP42A6NI28 874 aa1.42□□□□□ -2.18
USP3-209ENST00000558925 KPNA7A9QM74 516 aa1.42□□□□□ -2.18
USP3-209ENST00000558925 G3V2L1 256 aa1.42□□□□□ -2.18
USP3-209ENST00000558925 K7EPI3 171 aa1.42□□□□□ -2.18
USP3-209ENST00000558925 KLF11O14901 512 aa1.42□□□□□ -2.18
USP3-209ENST00000558925 OGTO15294 1046 aa1.42□□□□□ -2.18
USP3-209ENST00000558925 P2RX6O15547 441 aa1.42□□□□□ -2.18
USP3-209ENST00000558925 TLX2O43763 284 aaPredicted RBP1.42□□□□□ -2.18
USP3-209ENST00000558925 LANCL1O43813 399 aa1.42□□□□□ -2.18
USP3-209ENST00000558925 PCDH7O60245 1069 aa1.42□□□□□ -2.18
USP3-209ENST00000558925 MAGEC1O60732 1142 aa1.42□□□□□ -2.18
USP3-209ENST00000558925 SMPD2O60906 423 aa1.42□□□□□ -2.18
USP3-209ENST00000558925 CLN5O75503 358 aa1.42□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms