RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 FNTAP49354 379 aa21.92■■□□□ 1.1
CPSF1-202ENST00000527827 NUP107P57740 925 aa21.92■■□□□ 1.1
CPSF1-202ENST00000527827 GRK7Q8WTQ7 553 aa21.92■■□□□ 1.1
CPSF1-202ENST00000527827 SEC16BQ96JE7 1060 aa21.92■■□□□ 1.1
CPSF1-202ENST00000527827 NAT9Q9BTE0 207 aa21.92■■□□□ 1.1
CPSF1-202ENST00000527827 LIN28AQ9H9Z2 209 aaKnown RBP21.92■■□□□ 1.1
CPSF1-202ENST00000527827 KCNJ16Q9NPI9 418 aa21.92■■□□□ 1.1
CPSF1-202ENST00000527827 PRTFDC1Q9NRG1 225 aa21.92■■□□□ 1.1
CPSF1-202ENST00000527827 IGSF5Q9NSI5 407 aa21.92■■□□□ 1.1
CPSF1-202ENST00000527827 CORO1CQ9ULV4 474 aaPredicted RBP21.92■■□□□ 1.1
CPSF1-202ENST00000527827 ERVK-11Q9UQG0 969 aa21.92■■□□□ 1.1
CPSF1-202ENST00000527827 ITPR3Q14573 2671 aa21.92■■□□□ 1.1
CPSF1-202ENST00000527827 A0A0G2JN53 185 aa21.91■■□□□ 1.1
CPSF1-202ENST00000527827 PGRMC1O00264 195 aaKnown RBP21.91■■□□□ 1.1
CPSF1-202ENST00000527827 CDC7O00311 574 aa21.91■■□□□ 1.1
CPSF1-202ENST00000527827 DNALI1O14645 258 aaPredicted RBP21.91■■□□□ 1.1
CPSF1-202ENST00000527827 ZFAND5O76080 213 aa21.91■■□□□ 1.1
CPSF1-202ENST00000527827 HNRNPH1P31943 449 aaKnown RBP21.91■■□□□ 1.1
CPSF1-202ENST00000527827 HSD17B7P56937 341 aa21.91■■□□□ 1.1
CPSF1-202ENST00000527827 PMPCAQ10713 525 aa21.91■■□□□ 1.1
CPSF1-202ENST00000527827 XKR6Q5GH73 641 aa21.91■■□□□ 1.1
CPSF1-202ENST00000527827 TRMT10BQ6PF06 316 aaKnown RBP21.91■■□□□ 1.1
CPSF1-202ENST00000527827 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP21.91■■□□□ 1.1
CPSF1-202ENST00000527827 GAL3ST3Q96A11 431 aa21.91■■□□□ 1.1
CPSF1-202ENST00000527827 NAP1L3Q99457 506 aaPredicted RBP21.91■■□□□ 1.1
CPSF1-202ENST00000527827 CCDC77Q9BR77 488 aa21.91■■□□□ 1.1
CPSF1-202ENST00000527827 NPLQ9BXD5 320 aaPredicted RBP21.91■■□□□ 1.1
CPSF1-202ENST00000527827 PPP2R2CQ9Y2T4 447 aa21.91■■□□□ 1.1
CPSF1-202ENST00000527827 JRKLQ9Y4A0 524 aa21.91■■□□□ 1.1
CPSF1-202ENST00000527827 A0A0G2JMM0 328 aa21.9■■□□□ 1.1
CPSF1-202ENST00000527827 A0A1W2PPB8 328 aa21.9■■□□□ 1.1
CPSF1-202ENST00000527827 A0A1W2PRS3 328 aa21.9■■□□□ 1.1
CPSF1-202ENST00000527827 A8MVJ9 347 aa21.9■■□□□ 1.1
CPSF1-202ENST00000527827 KIR3DP1A8MWS1 328 aa21.9■■□□□ 1.1
CPSF1-202ENST00000527827 OR2J2O76002 312 aa21.9■■□□□ 1.1
CPSF1-202ENST00000527827 HOXD4P09016 255 aaPredicted RBP21.9■■□□□ 1.1
CPSF1-202ENST00000527827 CD1EP15812 388 aa21.9■■□□□ 1.1
CPSF1-202ENST00000527827 ZNF37AP17032 561 aaPredicted RBP21.9■■□□□ 1.1
CPSF1-202ENST00000527827 RAB38P57729 211 aa21.9■■□□□ 1.1
CPSF1-202ENST00000527827 STXBP1P61764 594 aaKnown RBP21.9■■□□□ 1.1
CPSF1-202ENST00000527827 PPIAP62937 165 aaKnown RBP21.9■■□□□ 1.1
CPSF1-202ENST00000527827 BBS9Q3SYG4 887 aa21.9■■□□□ 1.1
CPSF1-202ENST00000527827 GPALPP1Q8IXQ4 340 aa21.9■■□□□ 1.1
CPSF1-202ENST00000527827 OR2M7Q8NG81 312 aa21.9■■□□□ 1.1
CPSF1-202ENST00000527827 MS4A6EQ96DS6 147 aa21.9■■□□□ 1.1
CPSF1-202ENST00000527827 FAR2Q96K12 515 aa21.9■■□□□ 1.1
CPSF1-202ENST00000527827 QRFPRQ96P65 431 aa21.9■■□□□ 1.1
CPSF1-202ENST00000527827 ZDHHC11Q9H8X9 412 aa21.9■■□□□ 1.1
CPSF1-202ENST00000527827 PPANQ9NQ55 473 aaKnown RBP21.9■■□□□ 1.1
CPSF1-202ENST00000527827 HPF1Q9NWY4 346 aa21.9■■□□□ 1.1
CPSF1-202ENST00000527827 NPEPPSL1A6NEC2 478 aa21.89■■□□□ 1.09
CPSF1-202ENST00000527827 FAM166BA8MTA8 275 aa21.89■■□□□ 1.09
CPSF1-202ENST00000527827 OR6B1O95007 311 aa21.89■■□□□ 1.09
CPSF1-202ENST00000527827 SAT1P21673 171 aa21.89■■□□□ 1.09
CPSF1-202ENST00000527827 CCZ1BP86790 482 aa21.89■■□□□ 1.09
CPSF1-202ENST00000527827 CCZ1P86791 482 aaPredicted RBP21.89■■□□□ 1.09
CPSF1-202ENST00000527827 CDKL1Q00532 357 aa21.89■■□□□ 1.09
CPSF1-202ENST00000527827 PPP1R7Q15435 360 aa21.89■■□□□ 1.09
CPSF1-202ENST00000527827 C18orf21Q32NC0 220 aaPredicted RBP21.89■■□□□ 1.09
CPSF1-202ENST00000527827 GXYLT1Q4G148 440 aa21.89■■□□□ 1.09
CPSF1-202ENST00000527827 PAOXQ6QHF9 649 aa21.89■■□□□ 1.09
CPSF1-202ENST00000527827 IL20RBQ6UXL0 311 aa21.89■■□□□ 1.09
CPSF1-202ENST00000527827 SLCO4C1Q6ZQN7 724 aa21.89■■□□□ 1.09
CPSF1-202ENST00000527827 LRRC8AQ8IWT6 810 aa21.89■■□□□ 1.09
CPSF1-202ENST00000527827 KLHDC8AQ8IYD2 350 aa21.89■■□□□ 1.09
CPSF1-202ENST00000527827 ASB15Q8WXK1 588 aa21.89■■□□□ 1.09
CPSF1-202ENST00000527827 ZNF559Q9BR84 538 aa21.89■■□□□ 1.09
CPSF1-202ENST00000527827 WDR83Q9BRX9 315 aaKnown RBP21.89■■□□□ 1.09
CPSF1-202ENST00000527827 ADAP2Q9NPF8 381 aa21.89■■□□□ 1.09
CPSF1-202ENST00000527827 PNPLA3Q9NST1 481 aa21.89■■□□□ 1.09
CPSF1-202ENST00000527827 MYOTQ9UBF9 498 aa21.89■■□□□ 1.09
CPSF1-202ENST00000527827 LRIT2A6NDA9 550 aa21.88■■□□□ 1.09
CPSF1-202ENST00000527827 NPIPA2E9PIF3 369 aa21.88■■□□□ 1.09
CPSF1-202ENST00000527827 NPIPA3F8WFD2 350 aa21.88■■□□□ 1.09
CPSF1-202ENST00000527827 CLDN4O14493 209 aa21.88■■□□□ 1.09
CPSF1-202ENST00000527827 ERI3O43414 337 aaKnown RBP21.88■■□□□ 1.09
CPSF1-202ENST00000527827 TBX6O95947 436 aaPredicted RBP21.88■■□□□ 1.09
CPSF1-202ENST00000527827 C1GALT1C1LP0DN25 315 aa21.88■■□□□ 1.09
CPSF1-202ENST00000527827 SOX3P41225 446 aa21.88■■□□□ 1.09
CPSF1-202ENST00000527827 ART1P52961 327 aa21.88■■□□□ 1.09
CPSF1-202ENST00000527827 PLGLB1Q02325 96 aa21.88■■□□□ 1.09
CPSF1-202ENST00000527827 SLC13A2Q13183 592 aa21.88■■□□□ 1.09
CPSF1-202ENST00000527827 HP1BP3Q5SSJ5 553 aaPredicted RBP21.88■■□□□ 1.09
CPSF1-202ENST00000527827 ACAD11Q709F0 780 aa21.88■■□□□ 1.09
CPSF1-202ENST00000527827 CLNKQ7Z7G1 428 aa21.88■■□□□ 1.09
CPSF1-202ENST00000527827 ZNF595Q8IYB9 648 aa21.88■■□□□ 1.09
CPSF1-202ENST00000527827 FAM47BQ8NA70 645 aa21.88■■□□□ 1.09
CPSF1-202ENST00000527827 ACTRT1Q8TDG2 376 aa21.88■■□□□ 1.09
CPSF1-202ENST00000527827 ANKRD7Q92527 254 aa21.88■■□□□ 1.09
CPSF1-202ENST00000527827 RASL10BQ96S79 203 aa21.88■■□□□ 1.09
CPSF1-202ENST00000527827 KCNN3Q9UGI6 736 aa21.88■■□□□ 1.09
CPSF1-202ENST00000527827 ASIC3Q9UHC3 531 aa21.88■■□□□ 1.09
CPSF1-202ENST00000527827 OARD1Q9Y530 152 aa21.88■■□□□ 1.09
CPSF1-202ENST00000527827 WWP2O00308 870 aa21.87■■□□□ 1.09
CPSF1-202ENST00000527827 GLSO94925 669 aaPredicted RBP21.87■■□□□ 1.09
CPSF1-202ENST00000527827 GNAZP19086 355 aa21.87■■□□□ 1.09
CPSF1-202ENST00000527827 ELK3P41970 407 aa21.87■■□□□ 1.09
CPSF1-202ENST00000527827 GDF5P43026 501 aa21.87■■□□□ 1.09
CPSF1-202ENST00000527827 SLC6A12P48065 614 aa21.87■■□□□ 1.09
CPSF1-202ENST00000527827 SLBPQ14493 270 aaKnown RBP eCLIP21.87■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms