RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, human

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-222	ENST00000495981	SLC34A3	Q8N130	599 aa		4.11	□□□□□ -1.75
VPS52-222	ENST00000495981	LNX2	Q8N448	690 aa		4.11	□□□□□ -1.75
VPS52-222	ENST00000495981	SFRP1	Q8N474	314 aa		4.11	□□□□□ -1.75
VPS52-222	ENST00000495981	CPEB3	Q8NE35	698 aa	Known RBP	4.11	□□□□□ -1.75
VPS52-222	ENST00000495981	FAM110D	Q8TAY7	271 aa	Predicted RBP	4.11	□□□□□ -1.75
VPS52-222	ENST00000495981		Q8TCH9	128 aa		4.11	□□□□□ -1.75
VPS52-222	ENST00000495981	SLC37A2	Q8TED4	501 aa		4.11	□□□□□ -1.75
VPS52-222	ENST00000495981	RTP4	Q96DX8	246 aa		4.11	□□□□□ -1.75
VPS52-222	ENST00000495981	COX14	Q96I36	57 aa		4.11	□□□□□ -1.75
VPS52-222	ENST00000495981	SLC45A3	Q96JT2	553 aa		4.11	□□□□□ -1.75
VPS52-222	ENST00000495981	SMIM14	Q96QK8	99 aa		4.11	□□□□□ -1.75
VPS52-222	ENST00000495981	OR2M4	Q96R27	311 aa		4.11	□□□□□ -1.75
VPS52-222	ENST00000495981	DESI2	Q9BSY9	194 aa		4.11	□□□□□ -1.75
VPS52-222	ENST00000495981	CINP	Q9BW66	212 aa	Predicted RBP	4.11	□□□□□ -1.75
VPS52-222	ENST00000495981	TRIM31	Q9BZY9	425 aa		4.11	□□□□□ -1.75
VPS52-222	ENST00000495981	SLC39A8	Q9C0K1	460 aa		4.11	□□□□□ -1.75
VPS52-222	ENST00000495981	DPEP2	Q9H4A9	486 aa		4.11	□□□□□ -1.75
VPS52-222	ENST00000495981	CATSPERB	Q9H7T0	1116 aa		4.11	□□□□□ -1.75
VPS52-222	ENST00000495981	TRNAU1AP	Q9NX07	287 aa	Known RBP	4.11	□□□□□ -1.75
VPS52-222	ENST00000495981	OCIAD1	Q9NX40	245 aa		4.11	□□□□□ -1.75
VPS52-222	ENST00000495981	ADAM22	Q9P0K1	906 aa		4.11	□□□□□ -1.75
VPS52-222	ENST00000495981	SEPT10	Q9P0V9	454 aa		4.11	□□□□□ -1.75
VPS52-222	ENST00000495981	PILRA	Q9UKJ1	303 aa		4.11	□□□□□ -1.75
VPS52-222	ENST00000495981	PADI1	Q9ULC6	663 aa		4.11	□□□□□ -1.75
VPS52-222	ENST00000495981	NOX1	Q9Y5S8	564 aa		4.11	□□□□□ -1.75
VPS52-222	ENST00000495981	MRPS18B	Q9Y676	258 aa	Known RBP	4.11	□□□□□ -1.75
VPS52-222	ENST00000495981	NSD1	Q96L73	2696 aa	Predicted RBP	4.11	□□□□□ -1.75
VPS52-222	ENST00000495981	ABCA4	P78363	2273 aa		4.11	□□□□□ -1.75
VPS52-222	ENST00000495981	FER1L5	A0AVI2	2057 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	FAM90A8P	A6NJQ4	464 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	EFCAB7	A8K855	629 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981		A8MV72	311 aa	Predicted RBP	4.1	□□□□□ -1.75
VPS52-222	ENST00000495981		A8MXE2	369 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	EEF2K	O00418	725 aa	Known RBP	4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	CES2	O00748	559 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	DSCR3	O14972	297 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	PRICKLE3	O43900	615 aa	Predicted RBP	4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	MFSD11	O43934	449 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	CEP104	O60308	925 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	NDUFA10	O95299	355 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	PGLS	O95336	258 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	CBX6	O95503	412 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	ONECUT2	O95948	504 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	TNF	P01375	233 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	CALB1	P05937	261 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	ANKRD34C	P0C6C1	535 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	RFPL3S	P0C7P2	107 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	FAM90A13P	P0C7W8	464 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	FAM90A24P	P0C7X0	464 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	APEH	P13798	732 aa	Known RBP	4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	ERCC2	P18074	760 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	EDN2	P20800	178 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	COMT	P21964	271 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	FPR3	P25089	353 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	NDUFS1	P28331	727 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	TYK2	P29597	1187 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	HNRNPH3	P31942	346 aa	Known RBP	4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	CTNNA1	P35221	906 aa	Known RBP	4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	STC1	P52823	247 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	RAD23A	P54725	363 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	UBE2I	P63279	158 aa	Known RBP	4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	SLC25A11	Q02978	314 aa	Known RBP	4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	HHEX	Q03014	270 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	DPT	Q07507	201 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	BCL2L1	Q07817	233 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	IL10RB	Q08334	325 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	ILF3	Q12906	894 aa	Known RBP eCLIP	4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	LAMB3	Q13751	1172 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	DPYSL2	Q16555	572 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	AMZ1	Q400G9	498 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	PYCR3	Q53H96	274 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	RNASE12	Q5GAN4	147 aa	Known RBP	4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	RABL3	Q5HYI8	236 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	HENMT1	Q5T8I9	393 aa	Known RBP	4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	TEDDM1	Q5T9Z0	273 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	GKAP1	Q5VSY0	366 aa	Predicted RBP	4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	LRRC66	Q68CR7	880 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	TXNRD3NB	Q6F5E7	133 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	RAET1G	Q6H3X3	334 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	PLEKHA7	Q6IQ23	1121 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	FAM83H	Q6ZRV2	1179 aa	Predicted RBP	4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	KDELC2	Q7Z4H8	507 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	TECPR1	Q7Z6L1	1165 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	TMEM200A	Q86VY9	491 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	CREBRF	Q8IUR6	639 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	TMEM151B	Q8IW70	566 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	MCOLN2	Q8IZK6	566 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	SIRT6	Q8N6T7	355 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	APOBEC4	Q8WW27	367 aa	Known RBP	4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	STARD8	Q92502	1023 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	AKAP1	Q92667	903 aa	Known RBP eCLIP	4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	GPR78	Q96P69	363 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	ERGIC2	Q96RQ1	377 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	NUDCD1	Q96RS6	583 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	GATA5	Q9BWX5	397 aa	Predicted RBP	4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	GSDMC	Q9BYG8	508 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	DHX35	Q9H5Z1	703 aa	Known RBP	4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	SUDS3	Q9H7L9	328 aa	Predicted RBP	4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	APMAP	Q9HDC9	416 aa		4.1	□□□□□ -1.75
VPS52-222	ENST00000495981	PHPT1	Q9NRX4	125 aa	Predicted RBP	4.1	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms