RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 PIK3CBP42338 1070 aa14.65□□□□□ -0.06
HMGA1-206ENST00000478214 NEK2P51955 445 aa14.65□□□□□ -0.06
HMGA1-206ENST00000478214 CDH13P55290 713 aa14.65□□□□□ -0.06
HMGA1-206ENST00000478214 RAB38P57729 211 aa14.65□□□□□ -0.06
HMGA1-206ENST00000478214 OR4D2P58180 307 aa14.65□□□□□ -0.06
HMGA1-206ENST00000478214 RPS13P62277 151 aaKnown RBP14.65□□□□□ -0.06
HMGA1-206ENST00000478214 TRAF3Q13114 568 aa14.65□□□□□ -0.06
HMGA1-206ENST00000478214 ZRSR2Q15696 482 aaKnown RBP14.65□□□□□ -0.06
HMGA1-206ENST00000478214 TMEM35AQ53FP2 167 aa14.65□□□□□ -0.06
HMGA1-206ENST00000478214 DEPDC1Q5TB30 811 aa14.65□□□□□ -0.06
HMGA1-206ENST00000478214 KHDRBS2Q5VWX1 349 aaKnown RBP14.65□□□□□ -0.06
HMGA1-206ENST00000478214 JMJD6Q6NYC1 403 aaPredicted RBP14.65□□□□□ -0.06
HMGA1-206ENST00000478214 IGFL3Q6UXB1 125 aa14.65□□□□□ -0.06
HMGA1-206ENST00000478214 QSOX2Q6ZRP7 698 aa14.65□□□□□ -0.06
HMGA1-206ENST00000478214 LINC00696Q6ZRV3 163 aa14.65□□□□□ -0.06
HMGA1-206ENST00000478214 CHSY3Q70JA7 882 aa14.65□□□□□ -0.06
HMGA1-206ENST00000478214 SIRT6Q8N6T7 355 aa14.65□□□□□ -0.06
HMGA1-206ENST00000478214 SRFBP1Q8NEF9 429 aaKnown RBP14.65□□□□□ -0.06
HMGA1-206ENST00000478214 BRIX1Q8TDN6 353 aaKnown RBP14.65□□□□□ -0.06
HMGA1-206ENST00000478214 ZNF483Q8TF39 744 aaPredicted RBP14.65□□□□□ -0.06
HMGA1-206ENST00000478214 KCNC2Q96PR1 638 aa14.65□□□□□ -0.06
HMGA1-206ENST00000478214 SERINC2Q96SA4 455 aa14.65□□□□□ -0.06
HMGA1-206ENST00000478214 TBCDQ9BTW9 1192 aa14.65□□□□□ -0.06
HMGA1-206ENST00000478214 C1QTNF3Q9BXJ4 246 aa14.65□□□□□ -0.06
HMGA1-206ENST00000478214 SEMA4BQ9NPR2 832 aaPredicted RBP14.65□□□□□ -0.06
HMGA1-206ENST00000478214 NECTIN3Q9NQS3 549 aa14.65□□□□□ -0.06
HMGA1-206ENST00000478214 LUZP4Q9P127 313 aa14.65□□□□□ -0.06
HMGA1-206ENST00000478214 ADGRE2Q9UHX3 823 aa14.65□□□□□ -0.06
HMGA1-206ENST00000478214 TSC22D4Q9Y3Q8 395 aa14.65□□□□□ -0.06
HMGA1-206ENST00000478214 IGKV3D-11A0A0A0MRZ8 115 aa14.64□□□□□ -0.07
HMGA1-206ENST00000478214 A0A1B0GTL3 188 aa14.64□□□□□ -0.07
HMGA1-206ENST00000478214 PPP6CO00743 305 aa14.64□□□□□ -0.07
HMGA1-206ENST00000478214 ICAM2P13598 275 aa14.64□□□□□ -0.07
HMGA1-206ENST00000478214 ATP5F1P24539 256 aaPredicted RBP14.64□□□□□ -0.07
HMGA1-206ENST00000478214 ATP5A1P25705 553 aaKnown RBP14.64□□□□□ -0.07
HMGA1-206ENST00000478214 HNRNPFP52597 415 aaKnown RBP14.64□□□□□ -0.07
HMGA1-206ENST00000478214 MLLT10P55197 1068 aa14.64□□□□□ -0.07
HMGA1-206ENST00000478214 LIM2P55344 173 aa14.64□□□□□ -0.07
HMGA1-206ENST00000478214 ACTN3Q08043 901 aaPredicted RBP14.64□□□□□ -0.07
HMGA1-206ENST00000478214 RASA2Q15283 850 aa14.64□□□□□ -0.07
HMGA1-206ENST00000478214 BTBD16Q32M84 506 aa14.64□□□□□ -0.07
HMGA1-206ENST00000478214 PLAG1Q6DJT9 500 aa14.64□□□□□ -0.07
HMGA1-206ENST00000478214 EMBQ6PCB8 327 aa14.64□□□□□ -0.07
HMGA1-206ENST00000478214 PAPD4Q6PIY7 484 aaKnown RBP14.64□□□□□ -0.07
HMGA1-206ENST00000478214 IGFL2Q6UWQ7 119 aa14.64□□□□□ -0.07
HMGA1-206ENST00000478214 ISLR2Q6UXK2 745 aa14.64□□□□□ -0.07
HMGA1-206ENST00000478214 RIPOR1Q6ZS17 1223 aa14.64□□□□□ -0.07
HMGA1-206ENST00000478214 ZADH2Q8N4Q0 377 aa14.64□□□□□ -0.07
HMGA1-206ENST00000478214 ACOT4Q8N9L9 421 aa14.64□□□□□ -0.07
HMGA1-206ENST00000478214 FAM47BQ8NA70 645 aa14.64□□□□□ -0.07
HMGA1-206ENST00000478214 Q8NA96 180 aa14.64□□□□□ -0.07
HMGA1-206ENST00000478214 TMEM52Q8NDY8 209 aa14.64□□□□□ -0.07
HMGA1-206ENST00000478214 WDR20Q8TBZ3 569 aa14.64□□□□□ -0.07
HMGA1-206ENST00000478214 TM9SF4Q92544 642 aa14.64□□□□□ -0.07
HMGA1-206ENST00000478214 REPS1Q96D71 796 aa14.64□□□□□ -0.07
HMGA1-206ENST00000478214 CSF3RQ99062 836 aa14.64□□□□□ -0.07
HMGA1-206ENST00000478214 NTMT1Q9BV86 223 aa14.64□□□□□ -0.07
HMGA1-206ENST00000478214 SORBS1Q9BX66 1292 aaKnown RBP14.64□□□□□ -0.07
HMGA1-206ENST00000478214 ROGDIQ9GZN7 287 aa14.64□□□□□ -0.07
HMGA1-206ENST00000478214 PRDM9Q9NQV7 894 aa14.64□□□□□ -0.07
HMGA1-206ENST00000478214 PTGFRNQ9P2B2 879 aa14.64□□□□□ -0.07
HMGA1-206ENST00000478214 DCDC2Q9UHG0 476 aa14.64□□□□□ -0.07
HMGA1-206ENST00000478214 EMCNQ9ULC0 261 aa14.64□□□□□ -0.07
HMGA1-206ENST00000478214 DAPP1Q9UN19 280 aa14.64□□□□□ -0.07
HMGA1-206ENST00000478214 NBASA2RRP1 2371 aa14.64□□□□□ -0.07
HMGA1-206ENST00000478214 DOCK10Q96BY6 2186 aa14.64□□□□□ -0.07
HMGA1-206ENST00000478214 TLDC2A0PJX2 215 aa14.63□□□□□ -0.07
HMGA1-206ENST00000478214 CYR61O00622 381 aa14.63□□□□□ -0.07
HMGA1-206ENST00000478214 CDH16O75309 829 aa14.63□□□□□ -0.07
HMGA1-206ENST00000478214 SORBS2O94875 1100 aaKnown RBP14.63□□□□□ -0.07
HMGA1-206ENST00000478214 ETHE1O95571 254 aa14.63□□□□□ -0.07
HMGA1-206ENST00000478214 NUDT17P0C025 328 aa14.63□□□□□ -0.07
HMGA1-206ENST00000478214 HIST1H1TP22492 207 aaPredicted RBP14.63□□□□□ -0.07
HMGA1-206ENST00000478214 SOX11P35716 441 aa14.63□□□□□ -0.07
HMGA1-206ENST00000478214 SSR2P43308 183 aa14.63□□□□□ -0.07
HMGA1-206ENST00000478214 RAP1GDS1P52306 607 aa14.63□□□□□ -0.07
HMGA1-206ENST00000478214 HERVK_113P63132 956 aa14.63□□□□□ -0.07
HMGA1-206ENST00000478214 MFAP5Q13361 173 aa14.63□□□□□ -0.07
HMGA1-206ENST00000478214 AP5B1Q2VPB7 878 aa14.63□□□□□ -0.07
HMGA1-206ENST00000478214 PLEKHN1Q494U1 663 aaPredicted RBP14.63□□□□□ -0.07
HMGA1-206ENST00000478214 UNC50Q53HI1 259 aa14.63□□□□□ -0.07
HMGA1-206ENST00000478214 CRB2Q5IJ48 1285 aa14.63□□□□□ -0.07
HMGA1-206ENST00000478214 B3GNTL1Q67FW5 361 aaPredicted RBP14.63□□□□□ -0.07
HMGA1-206ENST00000478214 MILR1Q7Z6M3 343 aa14.63□□□□□ -0.07
HMGA1-206ENST00000478214 OR4F6Q8NGB9 312 aa14.63□□□□□ -0.07
HMGA1-206ENST00000478214 TRPC4APQ8TEL6 797 aa14.63□□□□□ -0.07
HMGA1-206ENST00000478214 PNPLA2Q96AD5 504 aa14.63□□□□□ -0.07
HMGA1-206ENST00000478214 RGMAQ96B86 450 aa14.63□□□□□ -0.07
HMGA1-206ENST00000478214 MTFMTQ96DP5 389 aaKnown RBP14.63□□□□□ -0.07
HMGA1-206ENST00000478214 TMEM237Q96Q45 408 aa14.63□□□□□ -0.07
HMGA1-206ENST00000478214 LPAR4Q99677 370 aa14.63□□□□□ -0.07
HMGA1-206ENST00000478214 MAPKAP1Q9BPZ7 522 aa14.63□□□□□ -0.07
HMGA1-206ENST00000478214 ERVK-6Q9BXR3 956 aa14.63□□□□□ -0.07
HMGA1-206ENST00000478214 PARD6BQ9BYG5 372 aa14.63□□□□□ -0.07
HMGA1-206ENST00000478214 EPS8L2Q9H6S3 715 aa14.63□□□□□ -0.07
HMGA1-206ENST00000478214 KCMF1Q9P0J7 381 aa14.63□□□□□ -0.07
HMGA1-206ENST00000478214 MMACHCQ9Y4U1 282 aa14.63□□□□□ -0.07
HMGA1-206ENST00000478214 CSAG2Q9Y5P2 127 aa14.63□□□□□ -0.07
HMGA1-206ENST00000478214 BAHCC1Q9P281 2608 aa14.62□□□□□ -0.07
HMGA1-206ENST00000478214 TCRBV16S1A1N1A0A5B0 115 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms