RNA–Protein interactions for RNA: ENST00000448971.5

USP39-206, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 610 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-206ENST00000448971 C19orf60Q96EN9 201 aa13.73□□□□□ -0.21
USP39-206ENST00000448971 NOL11Q9H8H0 719 aaKnown RBP13.73□□□□□ -0.21
USP39-206ENST00000448971 RIC8BQ9NVN3 520 aa13.73□□□□□ -0.21
USP39-206ENST00000448971 TMEM216Q9P0N5 145 aa13.73□□□□□ -0.21
USP39-206ENST00000448971 LUZP4Q9P127 313 aa13.73□□□□□ -0.21
USP39-206ENST00000448971 ERRFI1Q9UJM3 462 aaPredicted RBP13.73□□□□□ -0.21
USP39-206ENST00000448971 PCTPQ9UKL6 214 aa13.73□□□□□ -0.21
USP39-206ENST00000448971 ZNF490Q9ULM2 529 aaPredicted RBP13.73□□□□□ -0.21
USP39-206ENST00000448971 CSMD1Q96PZ7 3565 aa13.72□□□□□ -0.21
USP39-206ENST00000448971 A0A1W2PPM1 405 aa13.72□□□□□ -0.21
USP39-206ENST00000448971 TLDC2A0PJX2 215 aa13.72□□□□□ -0.21
USP39-206ENST00000448971 LRIT2A6NDA9 550 aa13.72□□□□□ -0.21
USP39-206ENST00000448971 ENO4A6NNW6 628 aa13.72□□□□□ -0.21
USP39-206ENST00000448971 B3GALT2O43825 422 aa13.72□□□□□ -0.21
USP39-206ENST00000448971 UGDHO60701 494 aa13.72□□□□□ -0.21
USP39-206ENST00000448971 DPM1O60762 260 aa13.72□□□□□ -0.21
USP39-206ENST00000448971 SH3BGRLO75368 114 aa13.72□□□□□ -0.21
USP39-206ENST00000448971 LDLRP01130 860 aa13.72□□□□□ -0.21
USP39-206ENST00000448971 GSTA1P08263 222 aa13.72□□□□□ -0.21
USP39-206ENST00000448971 CYC1P08574 325 aa13.72□□□□□ -0.21
USP39-206ENST00000448971 RPS17P08708 135 aaKnown RBP13.72□□□□□ -0.21
USP39-206ENST00000448971 RNH1P13489 461 aaKnown RBP13.72□□□□□ -0.21
USP39-206ENST00000448971 IL10P22301 178 aa13.72□□□□□ -0.21
USP39-206ENST00000448971 CERS1P27544 350 aa13.72□□□□□ -0.21
USP39-206ENST00000448971 DCTP40126 519 aa13.72□□□□□ -0.21
USP39-206ENST00000448971 CCNG1P51959 295 aa13.72□□□□□ -0.21
USP39-206ENST00000448971 E2F2Q14209 437 aa13.72□□□□□ -0.21
USP39-206ENST00000448971 MYBPC3Q14896 1274 aa13.72□□□□□ -0.21
USP39-206ENST00000448971 CPSF6Q16630 551 aaKnown RBP eCLIP13.72□□□□□ -0.21
USP39-206ENST00000448971 VWA5B1Q5TIE3 1220 aa13.72□□□□□ -0.21
USP39-206ENST00000448971 LIPJQ5W064 366 aa13.72□□□□□ -0.21
USP39-206ENST00000448971 SLC6A19Q695T7 634 aa13.72□□□□□ -0.21
USP39-206ENST00000448971 LANCL3Q6ZV70 420 aa13.72□□□□□ -0.21
USP39-206ENST00000448971 MAMDC2Q7Z304 686 aaPredicted RBP13.72□□□□□ -0.21
USP39-206ENST00000448971 HPS6Q86YV9 775 aa13.72□□□□□ -0.21
USP39-206ENST00000448971 PARP9Q8IXQ6 854 aa13.72□□□□□ -0.21
USP39-206ENST00000448971 LAS2Q8IYD9 372 aa13.72□□□□□ -0.21
USP39-206ENST00000448971 CA13Q8N1Q1 262 aa13.72□□□□□ -0.21
USP39-206ENST00000448971 OR7G3Q8NG95 312 aa13.72□□□□□ -0.21
USP39-206ENST00000448971 PRR7Q8TB68 274 aa13.72□□□□□ -0.21
USP39-206ENST00000448971 PPP4R1Q8TF05 950 aa13.72□□□□□ -0.21
USP39-206ENST00000448971 ZNF473Q8WTR7 871 aaKnown RBP13.72□□□□□ -0.21
USP39-206ENST00000448971 CAVIN3Q969G5 261 aa13.72□□□□□ -0.21
USP39-206ENST00000448971 PNPLA2Q96AD5 504 aa13.72□□□□□ -0.21
USP39-206ENST00000448971 NSUN5Q96P11 429 aaKnown RBP13.72□□□□□ -0.21
USP39-206ENST00000448971 CDK15Q96Q40 435 aa13.72□□□□□ -0.21
USP39-206ENST00000448971 SMAD5Q99717 465 aaKnown RBP13.72□□□□□ -0.21
USP39-206ENST00000448971 CENPKQ9BS16 269 aa13.72□□□□□ -0.21
USP39-206ENST00000448971 MS4A8Q9BY19 250 aa13.72□□□□□ -0.21
USP39-206ENST00000448971 AICDAQ9GZX7 198 aa13.72□□□□□ -0.21
USP39-206ENST00000448971 SEMA4BQ9NPR2 832 aaPredicted RBP13.72□□□□□ -0.21
USP39-206ENST00000448971 SLAMF7Q9NQ25 335 aa13.72□□□□□ -0.21
USP39-206ENST00000448971 PCDHGA11Q9Y5H2 935 aa13.72□□□□□ -0.21
USP39-206ENST00000448971 IGHV1-45A0A0A0MS14 117 aa13.71□□□□□ -0.21
USP39-206ENST00000448971 FOXO6A8MYZ6 492 aa13.71□□□□□ -0.21
USP39-206ENST00000448971 KLHL41O60662 606 aa13.71□□□□□ -0.21
USP39-206ENST00000448971 B4GALT2O60909 372 aa13.71□□□□□ -0.21
USP39-206ENST00000448971 CBX6O95503 412 aa13.71□□□□□ -0.21
USP39-206ENST00000448971 NUDT17P0C025 328 aa13.71□□□□□ -0.21
USP39-206ENST00000448971 SBK3P0C264 359 aa13.71□□□□□ -0.21
USP39-206ENST00000448971 SMIM10L1P0DMW3 83 aa13.71□□□□□ -0.21
USP39-206ENST00000448971 SSR2P43308 183 aa13.71□□□□□ -0.21
USP39-206ENST00000448971 RAP1GDS1P52306 607 aa13.71□□□□□ -0.21
USP39-206ENST00000448971 EFNA3P52797 238 aa13.71□□□□□ -0.21
USP39-206ENST00000448971 MTTPP55157 894 aa13.71□□□□□ -0.21
USP39-206ENST00000448971 PCDH1Q08174 1060 aa13.71□□□□□ -0.21
USP39-206ENST00000448971 ABRAXAS2Q15018 415 aa13.71□□□□□ -0.21
USP39-206ENST00000448971 ADPRMQ3LIE5 342 aa13.71□□□□□ -0.21
USP39-206ENST00000448971 PLEKHN1Q494U1 663 aaPredicted RBP13.71□□□□□ -0.21
USP39-206ENST00000448971 TTC19Q6DKK2 380 aaPredicted RBP13.71□□□□□ -0.21
USP39-206ENST00000448971 NDUFAF7Q7L592 441 aa13.71□□□□□ -0.21
USP39-206ENST00000448971 RIBC1Q8N443 379 aaPredicted RBP13.71□□□□□ -0.21
USP39-206ENST00000448971 SRFBP1Q8NEF9 429 aaKnown RBP13.71□□□□□ -0.21
USP39-206ENST00000448971 OR52B6Q8NGF0 335 aa13.71□□□□□ -0.21
USP39-206ENST00000448971 HUS1BQ8NHY5 278 aa13.71□□□□□ -0.21
USP39-206ENST00000448971 TSLPQ969D9 159 aa13.71□□□□□ -0.21
USP39-206ENST00000448971 SNRNP40Q96DI7 357 aaKnown RBP13.71□□□□□ -0.21
USP39-206ENST00000448971 SMIM10Q96HG1 83 aa13.71□□□□□ -0.21
USP39-206ENST00000448971 THOC3Q96J01 351 aaKnown RBP13.71□□□□□ -0.21
USP39-206ENST00000448971 KCNC2Q96PR1 638 aa13.71□□□□□ -0.21
USP39-206ENST00000448971 F2RL3Q96RI0 385 aa13.71□□□□□ -0.21
USP39-206ENST00000448971 MTERF1Q99551 399 aaKnown RBP13.71□□□□□ -0.21
USP39-206ENST00000448971 PARD6BQ9BYG5 372 aa13.71□□□□□ -0.21
USP39-206ENST00000448971 CLK4Q9HAZ1 481 aaKnown RBP13.71□□□□□ -0.21
USP39-206ENST00000448971 DMRT3Q9NQL9 472 aa13.71□□□□□ -0.21
USP39-206ENST00000448971 ADGRE2Q9UHX3 823 aa13.71□□□□□ -0.21
USP39-206ENST00000448971 LOC102723996A0A087X1L8 192 aa13.7□□□□□ -0.22
USP39-206ENST00000448971 IGHV3-20A0A0C4DH32 117 aa13.7□□□□□ -0.22
USP39-206ENST00000448971 OR2W5A6NFC9 320 aa13.7□□□□□ -0.22
USP39-206ENST00000448971 SAP18O00422 153 aaKnown RBP13.7□□□□□ -0.22
USP39-206ENST00000448971 COPEO14579 308 aa13.7□□□□□ -0.22
USP39-206ENST00000448971 OR7A17O14581 309 aa13.7□□□□□ -0.22
USP39-206ENST00000448971 DNAJB6O75190 326 aa13.7□□□□□ -0.22
USP39-206ENST00000448971 SEC24DO94855 1032 aaPredicted RBP13.7□□□□□ -0.22
USP39-206ENST00000448971 CLDN9O95484 217 aa13.7□□□□□ -0.22
USP39-206ENST00000448971 TBX6O95947 436 aaPredicted RBP13.7□□□□□ -0.22
USP39-206ENST00000448971 OTCP00480 354 aa13.7□□□□□ -0.22
USP39-206ENST00000448971 TGFB1P01137 390 aa13.7□□□□□ -0.22
USP39-206ENST00000448971 ATP5F1P24539 256 aaPredicted RBP13.7□□□□□ -0.22
USP39-206ENST00000448971 DEKP35659 375 aaKnown RBP13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms