RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 CHKBQ9Y259 395 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 ITM2BQ9Y287 266 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 PCDHGA1Q9Y5H4 931 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 TTC41PQ6P2S7 1318 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 IGSF9BQ9UPX0 1349 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 PLXNA4Q9HCM2 1894 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 MAP1BP46821 2468 aaKnown RBP3.83□□□□□ -1.8
HMGB3-203ENST00000430118 WDFY3Q8IZQ1 3526 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 ANKRD11Q6UB99 2663 aaPredicted RBP3.82□□□□□ -1.8
HMGB3-203ENST00000430118 MYH7BA7E2Y1 1941 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 MYH7P12883 1935 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 DENND4AQ7Z401 1863 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 CLUHO75153 1309 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 PHLPP2Q6ZVD8 1323 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 ZCWPW2A0A1B0GU75 182 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 hDV102S1A0JD36 115 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 CCDC162PA2VCL2 907 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 POLR3GO15318 223 aaPredicted RBP3.82□□□□□ -1.8
HMGB3-203ENST00000430118 FLRT2O43155 660 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 TTI1O43156 1089 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 PDE9AO76083 593 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 CHRNA1P02708 482 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 FAM106CPP0CH98 169 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 CCDC166P0CW27 439 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 PDHBP11177 359 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 PCP11498 1178 aaKnown RBP3.82□□□□□ -1.8
HMGB3-203ENST00000430118 PRF1P14222 555 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 HOXB2P14652 356 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 GAP43P17677 238 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 EPORP19235 508 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 POLR2CP19387 275 aaPredicted RBP3.82□□□□□ -1.8
HMGB3-203ENST00000430118 CBLP22681 906 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 MAPK3P27361 379 aaPredicted RBP3.82□□□□□ -1.8
HMGB3-203ENST00000430118 TKTP29401 623 aaKnown RBP3.82□□□□□ -1.8
HMGB3-203ENST00000430118 PTGER4P35408 488 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 RANBP1P43487 201 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 RPS9P46781 194 aaKnown RBP3.82□□□□□ -1.8
HMGB3-203ENST00000430118 FNTAP49354 379 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 MAPK12P53778 367 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 MLLT10P55197 1068 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 UBASH3AP57075 661 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 CD81P60033 236 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 IL1RL1Q01638 556 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 Q0VFX4 171 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 MLF2Q15773 248 aaPredicted RBP3.82□□□□□ -1.8
HMGB3-203ENST00000430118 TMEM35AQ53FP2 167 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 ASPRV1Q53RT3 343 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 SYT14P1Q58G82 188 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 SPDYCQ5MJ68 293 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 PAPPA-AS1Q5QFB9 102 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 CEP85LQ5SZL2 805 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 CCDC183Q5T5S1 534 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 CAPRIN2Q6IMN6 1127 aaKnown RBP3.82□□□□□ -1.8
HMGB3-203ENST00000430118 C11orf63Q6NUN7 778 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 ITPRIPQ8IWB1 547 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 LMNTD2Q8IXW0 634 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 C1orf87Q8N0U7 546 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 CPSF7Q8N684 471 aaKnown RBP3.82□□□□□ -1.8
HMGB3-203ENST00000430118 RBMXL3Q8N7X1 1067 aaKnown RBP3.82□□□□□ -1.8
HMGB3-203ENST00000430118 NEXN-AS1Q8NBZ9 246 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 TRIM58Q8NG06 486 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 NCOA7Q8NI08 942 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 SLC38A5Q8WUX1 472 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 UBLCP1Q8WVY7 318 aaPredicted RBP3.82□□□□□ -1.8
HMGB3-203ENST00000430118 DNAJB3Q8WWF6 145 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 SEPT1Q8WYJ6 367 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 WASF1Q92558 559 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 PHF21AQ96BD5 680 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 CHFRQ96EP1 664 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 BSCL2Q96G97 398 aaPredicted RBP3.82□□□□□ -1.8
HMGB3-203ENST00000430118 C5orf30Q96GV9 206 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 NAF1Q96HR8 494 aaKnown RBP3.82□□□□□ -1.8
HMGB3-203ENST00000430118 SGK494Q96LW2 274 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 C16orf45Q96MC5 204 aaPredicted RBP3.82□□□□□ -1.8
HMGB3-203ENST00000430118 LRRCC1Q9C099 1032 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 XPO4Q9C0E2 1151 aaKnown RBP3.82□□□□□ -1.8
HMGB3-203ENST00000430118 FAM49AQ9H0Q0 323 aaPredicted RBP3.82□□□□□ -1.8
HMGB3-203ENST00000430118 RBM38Q9H0Z9 239 aaKnown RBP3.82□□□□□ -1.8
HMGB3-203ENST00000430118 SRD5A3Q9H8P0 318 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 TCP11L1Q9NUJ3 509 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 TMEM30AQ9NV96 361 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 HPF1Q9NWY4 346 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 MIOSQ9NXC5 875 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 SPHK1Q9NYA1 384 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 SMARCAL1Q9NZC9 954 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 ZNF224Q9NZL3 707 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 TXNDC16Q9P2K2 825 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 MAD2L2Q9UI95 211 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 HOOK1Q9UJC3 728 aaKnown RBP3.82□□□□□ -1.8
HMGB3-203ENST00000430118 EXOC6BQ9Y2D4 811 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 N6AMT1Q9Y5N5 214 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 DYNC1LI1Q9Y6G9 523 aaKnown RBP3.82□□□□□ -1.8
HMGB3-203ENST00000430118 KIAA1217Q5T5P2 1943 aa3.82□□□□□ -1.8
HMGB3-203ENST00000430118 SMG1Q96Q15 3661 aaKnown RBP3.81□□□□□ -1.8
HMGB3-203ENST00000430118 EP300Q09472 2414 aaPredicted RBP3.81□□□□□ -1.8
HMGB3-203ENST00000430118 CEP250Q9BV73 2442 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 A0A1W2PPW3 197 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 ILVBLA1L0T0 632 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 HYKKA2RU49 373 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 GOLGA6L4A6NEF3 574 aa3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms