RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 CCSMST1Q4G0I0 132 aa9.73□□□□□ -0.85
VPS53-202ENST00000389040 MTX3Q5HYI7 312 aa9.73□□□□□ -0.85
VPS53-202ENST00000389040 TMEM164Q5U3C3 297 aa9.73□□□□□ -0.85
VPS53-202ENST00000389040 RAB11FIP2Q7L804 512 aa9.73□□□□□ -0.85
VPS53-202ENST00000389040 TMPRSS9Q7Z410 1059 aa9.73□□□□□ -0.85
VPS53-202ENST00000389040 IFNEQ86WN2 208 aa9.73□□□□□ -0.85
VPS53-202ENST00000389040 APLFQ8IW19 511 aaPredicted RBP9.73□□□□□ -0.85
VPS53-202ENST00000389040 D2HGDHQ8N465 521 aa9.73□□□□□ -0.85
VPS53-202ENST00000389040 PIP4P2Q8N4L2 257 aa9.73□□□□□ -0.85
VPS53-202ENST00000389040 L3MBTL4Q8NA19 623 aa9.73□□□□□ -0.85
VPS53-202ENST00000389040 FLVCR1-AS1Q8TAF5 88 aa9.73□□□□□ -0.85
VPS53-202ENST00000389040 NUDT8Q8WV74 236 aa9.73□□□□□ -0.85
VPS53-202ENST00000389040 CANT1Q8WVQ1 401 aa9.73□□□□□ -0.85
VPS53-202ENST00000389040 SLC13A3Q8WWT9 602 aa9.73□□□□□ -0.85
VPS53-202ENST00000389040 SELENOMQ8WWX9 145 aa9.73□□□□□ -0.85
VPS53-202ENST00000389040 PPWD1Q96BP3 646 aaKnown RBP9.73□□□□□ -0.85
VPS53-202ENST00000389040 MIEF2Q96C03 454 aa9.73□□□□□ -0.85
VPS53-202ENST00000389040 MTFMTQ96DP5 389 aaKnown RBP9.73□□□□□ -0.85
VPS53-202ENST00000389040 MAGEB10Q96LZ2 347 aaPredicted RBP9.73□□□□□ -0.85
VPS53-202ENST00000389040 TEFMQ96QE5 360 aaKnown RBP9.73□□□□□ -0.85
VPS53-202ENST00000389040 ASPSCR1Q9BZE9 553 aa9.73□□□□□ -0.85
VPS53-202ENST00000389040 DPY30Q9C005 99 aa9.73□□□□□ -0.85
VPS53-202ENST00000389040 POLR1BQ9H9Y6 1135 aa9.73□□□□□ -0.85
VPS53-202ENST00000389040 PDE7BQ9NP56 450 aa9.73□□□□□ -0.85
VPS53-202ENST00000389040 ZFC3H1O60293 1989 aaKnown RBP9.72□□□□□ -0.85
VPS53-202ENST00000389040 H0YJX3 145 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 TIPRLO75663 272 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 GPIP06744 558 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 ZCCHC18P0CG32 403 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 PIM1P11309 404 aaPredicted RBP9.72□□□□□ -0.85
VPS53-202ENST00000389040 ZNF26P17031 533 aaPredicted RBP9.72□□□□□ -0.85
VPS53-202ENST00000389040 GFERP55789 205 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 FOXC1Q12948 553 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 FXNQ16595 210 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 FAM174BQ3ZCQ3 159 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 ZC3H12BQ5HYM0 836 aaKnown RBP9.72□□□□□ -0.85
VPS53-202ENST00000389040 OR52E8Q6IFG1 317 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 HMBOX1Q6NT76 420 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 LCTLQ6UWM7 567 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 FAM92BQ6ZTR7 304 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 GALNT4Q8N4A0 578 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 MARVELD2Q8N4S9 558 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 OR2L3Q8NG85 312 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 NXPE2Q96DL1 559 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 PPM1MQ96MI6 270 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 TRAPPC9Q96Q05 1148 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 CGREF1Q99674 301 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 MAP3K3Q99759 626 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 ATG10Q9H0Y0 220 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 CLMPQ9H6B4 373 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 GPRC5BQ9NZH0 403 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 DKK4Q9UBT3 224 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 PLAGL1Q9UM63 463 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 SNX7Q9UNH6 387 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 AURKCQ9UQB9 309 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 PCDHGA3Q9Y5H0 932 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 KCNE2Q9Y6J6 123 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 GOLGA4Q13439 2230 aaKnown RBP9.72□□□□□ -0.85
VPS53-202ENST00000389040 IGHV5-51A0A0C4DH38 117 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 A0A1W2PPV9 198 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 HNRNPRO43390 633 aaKnown RBP9.72□□□□□ -0.85
VPS53-202ENST00000389040 AKAP10O43572 662 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 HYAL3O43820 417 aaPredicted RBP9.72□□□□□ -0.85
VPS53-202ENST00000389040 SRPX2O60687 465 aaPredicted RBP9.72□□□□□ -0.85
VPS53-202ENST00000389040 KCNH1O95259 989 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 IL6P05231 212 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 JMJD7P0C870 316 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 BMP2P12643 396 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 BCKDHAP12694 445 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 IL10P22301 178 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 PRPH2P23942 346 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 HTR1EP28566 365 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 MC2RQ01718 297 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 PCDH1Q08174 1060 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 TBCELQ5QJ74 424 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 SUSD1Q6UWL2 747 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 UGT2A3Q6UWM9 527 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 B3GNT8Q7Z7M8 397 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 ADGRG5Q8IZF4 528 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 KRTCAP2Q8N6L1 136 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 ANKFN1Q8N957 763 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 OR8J3Q8NGG0 315 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 FAM110BQ8TC76 370 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 TAAR9Q96RI9 348 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 DDA1Q9BW61 102 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 SCNM1Q9BWG6 230 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 PITHD1Q9GZP4 211 aaPredicted RBP9.72□□□□□ -0.85
VPS53-202ENST00000389040 COQ10BQ9H8M1 238 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 FANCEQ9HB96 536 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 TMEM184CQ9NVA4 438 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 SPHK1Q9NYA1 384 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 AP4B1Q9Y6B7 739 aa9.72□□□□□ -0.85
VPS53-202ENST00000389040 TCRBV5S2A0A599 114 aa9.71□□□□□ -0.86
VPS53-202ENST00000389040 UGDHO60701 494 aa9.71□□□□□ -0.86
VPS53-202ENST00000389040 PGRP06401 933 aa9.71□□□□□ -0.86
VPS53-202ENST00000389040 LINGO3P0C6S8 592 aa9.71□□□□□ -0.86
VPS53-202ENST00000389040 NCK1P16333 377 aa9.71□□□□□ -0.86
VPS53-202ENST00000389040 CD82P27701 267 aa9.71□□□□□ -0.86
VPS53-202ENST00000389040 PEBP1P30086 187 aaKnown RBP9.71□□□□□ -0.86
VPS53-202ENST00000389040 NEK2P51955 445 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms