RNA–Protein interactions for RNA: ENST00000368545.7

TPM3-213, Transcript of tropomyosin 3, humanhuman

TSL 1 (best)

Gene TPM3, Length 2,147 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-213ENST00000368545 C3orf30Q96M34 536 aa8.4□□□□□ -1.06
TPM3-213ENST00000368545 MMADHCQ9H3L0 296 aaPredicted RBP8.4□□□□□ -1.06
TPM3-213ENST00000368545 ACTR8Q9H981 624 aa8.4□□□□□ -1.06
TPM3-213ENST00000368545 ZNHIT2Q9UHR6 403 aa8.4□□□□□ -1.06
TPM3-213ENST00000368545 TIMM22Q9Y584 194 aa8.4□□□□□ -1.06
TPM3-213ENST00000368545 SPAG17Q6Q759 2223 aa8.4□□□□□ -1.06
TPM3-213ENST00000368545 ATP6AP2A0A1C7CYW4 349 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 VGLL3A8MV65 326 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 SLC31A1O15431 190 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 LATO43561 262 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 ATP6AP2O75787 350 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 SEMA4FO95754 770 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 KRT6AP02538 564 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 KRT6BP04259 564 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 SLC35G4P0C7Q5 338 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 LINC00032P0C843 101 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 PRR35P0CG20 571 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 GLI4P10075 376 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 COX4I1P13073 169 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 IDO1P14902 403 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 FAHP16930 419 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 IMPA1P29218 277 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 OXTRP30559 389 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 AKT2P31751 481 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 ACSL1P33121 698 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 NUDT1P36639 197 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 KRT6CP48668 564 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 MRPL19P49406 292 aaKnown RBP8.39□□□□□ -1.07
TPM3-213ENST00000368545 ACADVLP49748 655 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 TMPRSS3P57727 454 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 PFN3P60673 137 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 KCNJ2P63252 427 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 MXRA7P84157 204 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 CYLC2Q14093 348 aaPredicted RBP8.39□□□□□ -1.07
TPM3-213ENST00000368545 SMU1Q2TAY7 513 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 LCE2CQ5TA81 110 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 LIPJQ5W064 366 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 JMJD6Q6NYC1 403 aaPredicted RBP8.39□□□□□ -1.07
TPM3-213ENST00000368545 AGTRAPQ6RW13 159 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 C16orf54Q6UWD8 224 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 DCUN1D3Q8IWE4 304 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 KIF2BQ8N4N8 673 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 FAM26EQ8N5C1 309 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 L3MBTL4Q8NA19 623 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 OR9A1PQ8NGU1 263 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 SNRNP27Q8WVK2 155 aaKnown RBP8.39□□□□□ -1.07
TPM3-213ENST00000368545 MCUR1Q96AQ8 359 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 TBC1D10AQ9BXI6 508 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 FZD3Q9NPG1 666 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 OBP2BQ9NPH6 170 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 RASSF1Q9NS23 344 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 NDE1Q9NXR1 346 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 PILRBQ9UKJ0 227 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 SNX6Q9UNH7 406 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 BTRCQ9Y297 605 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 SETXQ7Z333 2677 aaKnown RBP8.39□□□□□ -1.07
TPM3-213ENST00000368545 TRABD2BA6NFA1 517 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 ZNF839A8K0R7 811 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 FLRT2O43155 660 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 RGS14O43566 566 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 ZNF217O75362 1048 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 SLC16A8O95907 504 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 FUT4P22083 530 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 HSD17B2P37059 387 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 CPA2P48052 419 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 CCR5P51681 352 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 YPEL5P62699 121 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 ERVK-8P63133 956 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 ATP6AP1LQ52LC2 224 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 CAPN13Q6MZZ7 669 aaPredicted RBP8.39□□□□□ -1.07
TPM3-213ENST00000368545 MZT2BQ6NZ67 158 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 FAM83HQ6ZRV2 1179 aaPredicted RBP8.39□□□□□ -1.07
TPM3-213ENST00000368545 RINLQ6ZS11 566 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 THOC6Q86W42 341 aaKnown RBP8.39□□□□□ -1.07
TPM3-213ENST00000368545 DCBLD1Q8N8Z6 715 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 RBM15BQ8NDT2 890 aaKnown RBP8.39□□□□□ -1.07
TPM3-213ENST00000368545 ZNF566Q969W8 418 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 RAD51AP1Q96B01 352 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 CLPTM1LQ96KA5 538 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 PPP3R2Q96LZ3 170 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 PKP4Q99569 1192 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 PITHD1Q9GZP4 211 aaPredicted RBP8.39□□□□□ -1.07
TPM3-213ENST00000368545 ATG10Q9H0Y0 220 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 TMEM45AQ9NWC5 275 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 TAS2R1Q9NYW7 299 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 SLC22A14Q9Y267 594 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 ASF1AQ9Y294 204 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 PCDHGA1Q9Y5H4 931 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 PCYT1BQ9Y5K3 369 aaPredicted RBP8.39□□□□□ -1.07
TPM3-213ENST00000368545 LRP4O75096 1905 aa8.39□□□□□ -1.07
TPM3-213ENST00000368545 GCN1Q92616 2671 aaKnown RBP8.38□□□□□ -1.07
TPM3-213ENST00000368545 C10orf142B7Z368 130 aa8.38□□□□□ -1.07
TPM3-213ENST00000368545 B9A039 149 aa8.38□□□□□ -1.07
TPM3-213ENST00000368545 PSMD12O00232 456 aaPredicted RBP8.38□□□□□ -1.07
TPM3-213ENST00000368545 SLC28A1O00337 649 aa8.38□□□□□ -1.07
TPM3-213ENST00000368545 KRT16P08779 473 aa8.38□□□□□ -1.07
TPM3-213ENST00000368545 GNSP15586 552 aa8.38□□□□□ -1.07
TPM3-213ENST00000368545 EPORP19235 508 aa8.38□□□□□ -1.07
TPM3-213ENST00000368545 KIR2DL2P43627 348 aaPredicted RBP8.38□□□□□ -1.07
TPM3-213ENST00000368545 PNLIPRP1P54315 467 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms