RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 COQ3Q9NZJ6 369 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 ENPP5Q9UJA9 477 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 ELOA3DA6NLF2 546 aaPredicted RBP11.1□□□□□ -0.63
VPS39-201ENST00000318006 J3QLW9 94 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 FLRT2O43155 660 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 EEDO75530 441 aaKnown RBP11.1□□□□□ -0.63
VPS39-201ENST00000318006 PGAM2P15259 253 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 ZNF19P17023 458 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 NT5EP21589 574 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 CMPK1P30085 196 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 SLC5A2P31639 672 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 MAP3K8P41279 467 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 GRK6P43250 576 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 E2F1Q01094 437 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 MS4A2Q01362 244 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 NPRL3Q12980 569 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 SIX1Q15475 284 aaPredicted RBP11.1□□□□□ -0.63
VPS39-201ENST00000318006 ELOA3BQ3SY89 546 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 KLHL26Q53HC5 615 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 CDKL4Q5MAI5 379 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 BRAT1Q6PJG6 821 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 CARM1Q86X55 608 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 GDPD1Q8N9F7 314 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 ELOA3Q8NG57 546 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 MOCS1Q9NZB8 636 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 TMEM181Q9P2C4 612 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 NLKQ9UBE8 527 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 MED31Q9Y3C7 131 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 MYH11P35749 1972 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 TRBV23OR9-2A0A075B6M9 112 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 PRSS51A0A1B0GVH4 220 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 OR1F1O43749 312 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 PRKYO43930 277 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 STSP08842 583 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 GM2AP17900 193 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 OR12D2P58182 307 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 SPHARQ15513 63 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 EIF2S3LQ2VIR3 472 aaKnown RBP11.1□□□□□ -0.63
VPS39-201ENST00000318006 NAPRTQ6XQN6 538 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 LRRC69Q6ZNQ3 347 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 TSPAN33Q86UF1 283 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 DCAF4L2Q8NA75 395 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 SLC29A1Q99808 456 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 PCBD2Q9H0N5 130 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 KCNH6Q9H252 994 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 PLEKHA1Q9HB21 404 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 ZNF451Q9Y4E5 1061 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 MYH1P12882 1939 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 BCHEP06276 602 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 DHRS4L1P0CG22 281 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 CKMT1AP12532 417 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 ILF3Q12906 894 aaKnown RBP eCLIP11.1□□□□□ -0.63
VPS39-201ENST00000318006 FGFBP1Q14512 234 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 NTRK2Q16620 822 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 ARSIQ5FYB1 569 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 VITQ6UXI7 678 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 CMTM8Q8IZV2 173 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 C1orf52Q8N6N3 182 aaKnown RBP11.1□□□□□ -0.63
VPS39-201ENST00000318006 NAV1Q8NEY1 1877 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 OR5AK3PQ8NH89 298 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 TRIB2Q92519 343 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 C5orf34Q96MH7 638 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 B3GNT4Q9C0J1 378 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 NDUFAF4Q9P032 175 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 MGAT4CQ9UBM8 478 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 SCP2D1Q9UJQ7 156 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 STUB1Q9UNE7 303 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 TOGARAM1Q9Y4F4 1720 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 INSL5Q9Y5Q6 135 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 TAF1P21675 1872 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 LOC730098B7Z3J9 87 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 CAPN5O15484 640 aaPredicted RBP11.09□□□□□ -0.63
VPS39-201ENST00000318006 RCBTB2O95199 551 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 MT-ND5P03915 603 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 EBLN1P0CF75 366 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 CELP19835 753 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 PGDP52209 483 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 ARF3P61204 181 aaPredicted RBP11.09□□□□□ -0.63
VPS39-201ENST00000318006 ARF1P84077 181 aaKnown RBP11.09□□□□□ -0.63
VPS39-201ENST00000318006 PRKCDQ05655 676 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 PIWIL3Q7Z3Z3 882 aaKnown RBP11.09□□□□□ -0.63
VPS39-201ENST00000318006 NXPE1Q8N323 547 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 HDDC3Q8N4P3 179 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 ATP6V1C2Q8NEY4 427 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 PYCR2Q96C36 320 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 EFCAB11Q9BUY7 163 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 ZNF700Q9H0M5 742 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 C11orf49Q9H6J7 331 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 MAGIXQ9H6Y5 334 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 RNF121Q9H920 327 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 GOLGA4Q13439 2230 aaKnown RBP11.09□□□□□ -0.63
VPS39-201ENST00000318006 C13orf42A0A1B0GVH6 325 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 CLDN7O95471 211 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 SOD2P04179 222 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 GALTP07902 379 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 OR4D2P58180 307 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 CD47Q08722 323 aa11.09□□□□□ -0.63
VPS39-201ENST00000318006 AIMP2Q13155 320 aaKnown RBP11.09□□□□□ -0.63
VPS39-201ENST00000318006 ATXN7L3Q14CW9 347 aaPredicted RBP11.09□□□□□ -0.63
VPS39-201ENST00000318006 TOR1AIP1Q5JTV8 583 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms