RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 MAP2K4P45985 399 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 RGRP47804 291 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 RPP38P78345 283 aaKnown RBP3.83□□□□□ -1.8
SCN1A-214ENST00000637038 CNTN1Q12860 1018 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 DDX39BQ13838 428 aaKnown RBP3.83□□□□□ -1.8
SCN1A-214ENST00000637038 MRPL58Q14197 206 aaKnown RBP3.83□□□□□ -1.8
SCN1A-214ENST00000637038 CTF1Q16619 201 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 PHKG1Q16816 387 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 ZNF630Q2M218 657 aaPredicted RBP3.83□□□□□ -1.8
SCN1A-214ENST00000637038 ZNF362Q5T0B9 420 aaPredicted RBP3.83□□□□□ -1.8
SCN1A-214ENST00000637038 GPRC6AQ5T6X5 926 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 TMEM53Q6P2H8 277 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 LINGO4Q6UY18 593 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 ANKRD46Q86W74 232 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 NPAS3Q8IXF0 933 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 ARL6IP6Q8N6S5 226 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 NDNFQ8TB73 568 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 SETD6Q8TBK2 473 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 DYNC2LI1Q8TCX1 351 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 FBLIM1Q8WUP2 373 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 ELMO1Q92556 727 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 TP53INP1Q96A56 240 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 SERINC2Q96SA4 455 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 NEURL2Q9BR09 285 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 DOHHQ9BU89 302 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 LDHAL6BQ9BYZ2 381 aaPredicted RBP3.83□□□□□ -1.8
SCN1A-214ENST00000637038 ACPTQ9BZG2 426 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 TM6SF2Q9BZW4 377 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 ACTL8Q9H568 366 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 ARMC7Q9H6L4 198 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 TPT1P8Q9HAU6 139 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 PCDH12Q9NPG4 1184 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 THG1LQ9NWX6 298 aaKnown RBP3.83□□□□□ -1.8
SCN1A-214ENST00000637038 NPAP1Q9NZP6 1156 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 SH3BP4Q9P0V3 963 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 DNMT3BQ9UBC3 853 aaKnown RBP3.83□□□□□ -1.8
SCN1A-214ENST00000637038 GULP1Q9UBP9 304 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 LHX3Q9UBR4 397 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 ZNF221Q9UK13 617 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 NDRG4Q9ULP0 352 aaKnown RBP3.83□□□□□ -1.8
SCN1A-214ENST00000637038 FCF1Q9Y324 198 aaKnown RBP3.83□□□□□ -1.8
SCN1A-214ENST00000637038 MAGED1Q9Y5V3 778 aaPredicted RBP3.83□□□□□ -1.8
SCN1A-214ENST00000637038 BACE2Q9Y5Z0 518 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 KCNE2Q9Y6J6 123 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 CHD9Q3L8U1 2897 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 A0A1B0GTL3 188 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 CXorf51AA0A1B0GTR3 108 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 MYADML2A6NDP7 307 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 CLCA1A8K7I4 914 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 NPIPB8E9PQR5 432 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 COCHO43405 550 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 RFPL2O75678 378 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 SNX4O95219 450 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 ANXA4P09525 319 aaPredicted RBP3.83□□□□□ -1.8
SCN1A-214ENST00000637038 HSMCR30P0CW71 290 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 BMP4P12644 408 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 HOXB9P17482 250 aaPredicted RBP3.83□□□□□ -1.8
SCN1A-214ENST00000637038 SDC1P18827 310 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 ALDH4A1P30038 563 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 GGT2P36268 569 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 GGT5P36269 586 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 CSKP41240 450 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 CRATP43155 626 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 GSSP48637 474 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 INPP1P49441 399 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 PHC1P78364 1004 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 FAM189BP81408 668 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 PIGFQ07326 219 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 FCHO2Q0JRZ9 810 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 KIAA0040Q15053 153 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 NCF4Q15080 339 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 CLLU1OSQ5K130 101 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 ATXN7L2Q5T6C5 722 aaPredicted RBP3.83□□□□□ -1.8
SCN1A-214ENST00000637038 LAIR2Q6ISS4 152 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 C16orf54Q6UWD8 224 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 CASP12Q6UXS9 341 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 RNF19BQ6ZMZ0 732 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 GDPGP1Q6ZNW5 385 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 SLC16A12Q6ZSM3 486 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 TRMT11Q7Z4G4 463 aaKnown RBP3.83□□□□□ -1.8
SCN1A-214ENST00000637038 HEATR4Q86WZ0 1026 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 RAVER1Q8IY67 606 aaKnown RBP3.83□□□□□ -1.8
SCN1A-214ENST00000637038 OR8H2Q8N162 312 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 OR8J2Q8NGG1 315 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 SUN5Q8TC36 379 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 RASSF5Q8WWW0 418 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 AP3S1Q92572 193 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 FKBP10Q96AY3 582 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 TXNDC15Q96J42 360 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 RPL10LQ96L21 214 aaKnown RBP3.83□□□□□ -1.8
SCN1A-214ENST00000637038 QRFPRQ96P65 431 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 ZNF300Q96RE9 604 aaPredicted RBP3.83□□□□□ -1.8
SCN1A-214ENST00000637038 GABARAPL3Q9BY60 117 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 SIAEQ9HAT2 523 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 BRF2Q9HAW0 419 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 EXOSC4Q9NPD3 245 aaKnown RBP3.83□□□□□ -1.8
SCN1A-214ENST00000637038 EHD3Q9NZN3 535 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 CNOT2Q9NZN8 540 aaKnown RBP3.83□□□□□ -1.8
SCN1A-214ENST00000637038 SEC14L4Q9UDX3 406 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 VPS51Q9UID3 782 aa3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms