RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 TBX6O95947 436 aaPredicted RBP13.78□□□□□ -0.2
SHMT2-210ENST00000553950 ANXA4P09525 319 aaPredicted RBP13.78□□□□□ -0.2
SHMT2-210ENST00000553950 SDC1P18827 310 aa13.78□□□□□ -0.2
SHMT2-210ENST00000553950 BSGP35613 385 aa13.78□□□□□ -0.2
SHMT2-210ENST00000553950 MC2RQ01718 297 aa13.78□□□□□ -0.2
SHMT2-210ENST00000553950 SLC9A5Q14940 896 aa13.78□□□□□ -0.2
SHMT2-210ENST00000553950 TERF2Q15554 542 aa13.78□□□□□ -0.2
SHMT2-210ENST00000553950 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.78□□□□□ -0.2
SHMT2-210ENST00000553950 RFTN2Q52LD8 501 aaPredicted RBP13.78□□□□□ -0.2
SHMT2-210ENST00000553950 IL23RQ5VWK5 629 aa13.78□□□□□ -0.2
SHMT2-210ENST00000553950 ALYREFQ86V81 257 aaKnown RBP13.78□□□□□ -0.2
SHMT2-210ENST00000553950 TMEM126BQ8IUX1 230 aa13.78□□□□□ -0.2
SHMT2-210ENST00000553950 CPSF7Q8N684 471 aaKnown RBP13.78□□□□□ -0.2
SHMT2-210ENST00000553950 KCT2Q8NC54 265 aa13.78□□□□□ -0.2
SHMT2-210ENST00000553950 GLB1L3Q8NCI6 653 aaPredicted RBP13.78□□□□□ -0.2
SHMT2-210ENST00000553950 OR1L3Q8NH93 324 aa13.78□□□□□ -0.2
SHMT2-210ENST00000553950 CATSPER2Q96P56 530 aa13.78□□□□□ -0.2
SHMT2-210ENST00000553950 C1orf50Q9BV19 199 aa13.78□□□□□ -0.2
SHMT2-210ENST00000553950 WDR41Q9HAD4 459 aa13.78□□□□□ -0.2
SHMT2-210ENST00000553950 LYRM4Q9HD34 91 aa13.78□□□□□ -0.2
SHMT2-210ENST00000553950 MYNNQ9NPC7 610 aa13.78□□□□□ -0.2
SHMT2-210ENST00000553950 SDR39U1Q9NRG7 319 aaPredicted RBP13.78□□□□□ -0.2
SHMT2-210ENST00000553950 CUTCQ9NTM9 273 aa13.78□□□□□ -0.2
SHMT2-210ENST00000553950 LOXL2Q9Y4K0 774 aa13.78□□□□□ -0.2
SHMT2-210ENST00000553950 PCDHB3Q9Y5E6 796 aa13.78□□□□□ -0.2
SHMT2-210ENST00000553950 CAPN7Q9Y6W3 813 aa13.78□□□□□ -0.2
SHMT2-210ENST00000553950 A0A0A6YYD5 115 aa13.77□□□□□ -0.21
SHMT2-210ENST00000553950 SPAARA0A1B0GVQ0 90 aa13.77□□□□□ -0.21
SHMT2-210ENST00000553950 A0A1B0GX78 115 aa13.77□□□□□ -0.21
SHMT2-210ENST00000553950 DYTNA2CJ06 578 aa13.77□□□□□ -0.21
SHMT2-210ENST00000553950 SAP18O00422 153 aaKnown RBP13.77□□□□□ -0.21
SHMT2-210ENST00000553950 FCHO1O14526 889 aa13.77□□□□□ -0.21
SHMT2-210ENST00000553950 DSCR3O14972 297 aa13.77□□□□□ -0.21
SHMT2-210ENST00000553950 GALR3O60755 368 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-210ENST00000553950 CPNE3O75131 537 aaKnown RBP13.77□□□□□ -0.21
SHMT2-210ENST00000553950 SH3BGRLO75368 114 aa13.77□□□□□ -0.21
SHMT2-210ENST00000553950 KLHL18O94889 574 aa13.77□□□□□ -0.21
SHMT2-210ENST00000553950 FRYLO94915 3013 aa13.77□□□□□ -0.21
SHMT2-210ENST00000553950 ALDOCP09972 364 aaKnown RBP13.77□□□□□ -0.21
SHMT2-210ENST00000553950 JMJD7P0C870 316 aa13.77□□□□□ -0.21
SHMT2-210ENST00000553950 SMIM10L1P0DMW3 83 aa13.77□□□□□ -0.21
SHMT2-210ENST00000553950 BCKDHAP12694 445 aa13.77□□□□□ -0.21
SHMT2-210ENST00000553950 PRPS1L1P21108 318 aa13.77□□□□□ -0.21
SHMT2-210ENST00000553950 JAK1P23458 1154 aa13.77□□□□□ -0.21
SHMT2-210ENST00000553950 PTPRBP23467 1997 aa13.77□□□□□ -0.21
SHMT2-210ENST00000553950 ATP5A1P25705 553 aaKnown RBP13.77□□□□□ -0.21
SHMT2-210ENST00000553950 BUD31P41223 144 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-210ENST00000553950 C21orf58P58505 322 aa13.77□□□□□ -0.21
SHMT2-210ENST00000553950 RAB8AP61006 207 aa13.77□□□□□ -0.21
SHMT2-210ENST00000553950 SF3A3Q12874 501 aaKnown RBP eCLIP13.77□□□□□ -0.211e-13■■■□□ 16.4
SHMT2-210ENST00000553950 HEPACAMQ14CZ8 416 aa13.77□□□□□ -0.21
SHMT2-210ENST00000553950 FAM91A1Q658Y4 838 aa13.77□□□□□ -0.21
SHMT2-210ENST00000553950 RAB11FIP2Q7L804 512 aa13.77□□□□□ -0.21
SHMT2-210ENST00000553950 R3HCC1LQ7Z5L2 792 aaKnown RBP13.77□□□□□ -0.21
SHMT2-210ENST00000553950 TMEM132CQ8N3T6 1108 aa13.77□□□□□ -0.21
SHMT2-210ENST00000553950 LIX1Q8N485 282 aa13.77□□□□□ -0.21
SHMT2-210ENST00000553950 ARHGEF39Q8N4T4 335 aa13.77□□□□□ -0.21
SHMT2-210ENST00000553950 ACOT4Q8N9L9 421 aa13.77□□□□□ -0.21
SHMT2-210ENST00000553950 WDR36Q8NI36 951 aaKnown RBP13.77□□□□□ -0.21
SHMT2-210ENST00000553950 MTERF3Q96E29 417 aa13.77□□□□□ -0.21
SHMT2-210ENST00000553950 ZNF764Q96H86 408 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-210ENST00000553950 SMIM10Q96HG1 83 aa13.77□□□□□ -0.21
SHMT2-210ENST00000553950 C10orf90Q96M02 699 aa13.77□□□□□ -0.21
SHMT2-210ENST00000553950 PRPF18Q99633 342 aaKnown RBP13.77□□□□□ -0.21
SHMT2-210ENST00000553950 DDA1Q9BW61 102 aa13.77□□□□□ -0.21
SHMT2-210ENST00000553950 EBPLQ9BY08 206 aa13.77□□□□□ -0.21
SHMT2-210ENST00000553950 ZNF717Q9BY31 904 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-210ENST00000553950 ASPSCR1Q9BZE9 553 aa13.77□□□□□ -0.21
SHMT2-210ENST00000553950 DPY30Q9C005 99 aa13.77□□□□□ -0.21
SHMT2-210ENST00000553950 ZFHX2Q9C0A1 2572 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-210ENST00000553950 B3GNT4Q9C0J1 378 aa13.77□□□□□ -0.21
SHMT2-210ENST00000553950 NMUR2Q9GZQ4 415 aa13.77□□□□□ -0.21
SHMT2-210ENST00000553950 SYNPO2LQ9H987 977 aa13.77□□□□□ -0.21
SHMT2-210ENST00000553950 SAR1AQ9NR31 198 aa13.77□□□□□ -0.21
SHMT2-210ENST00000553950 GIMAP2Q9UG22 337 aa13.77□□□□□ -0.21
SHMT2-210ENST00000553950 COPG1Q9Y678 874 aaKnown RBP13.77□□□□□ -0.21
SHMT2-210ENST00000553950 ZNF292O60281 2723 aa13.77□□□□□ -0.21
SHMT2-210ENST00000553950 KIF26BQ2KJY2 2108 aa13.76□□□□□ -0.21
SHMT2-210ENST00000553950 SCN3AQ9NY46 2000 aa13.76□□□□□ -0.21
SHMT2-210ENST00000553950 SYNDIG1LA6NDD5 238 aa13.76□□□□□ -0.21
SHMT2-210ENST00000553950 H3BMH7 237 aa13.76□□□□□ -0.21
SHMT2-210ENST00000553950 SCRG1O75711 98 aa13.76□□□□□ -0.21
SHMT2-210ENST00000553950 STATHP02808 62 aa13.76□□□□□ -0.21
SHMT2-210ENST00000553950 KLK1P06870 262 aa13.76□□□□□ -0.21
SHMT2-210ENST00000553950 PIM1P11309 404 aaPredicted RBP13.76□□□□□ -0.21
SHMT2-210ENST00000553950 G6PDP11413 515 aa13.76□□□□□ -0.21
SHMT2-210ENST00000553950 IL1RNP18510 177 aa13.76□□□□□ -0.21
SHMT2-210ENST00000553950 TPP2P29144 1249 aaPredicted RBP13.76□□□□□ -0.21
SHMT2-210ENST00000553950 TLX1P31314 330 aaPredicted RBP13.76□□□□□ -0.21
SHMT2-210ENST00000553950 BTN3A2P78410 334 aa13.76□□□□□ -0.21
SHMT2-210ENST00000553950 KLC1Q07866 573 aa13.76□□□□□ -0.21
SHMT2-210ENST00000553950 DEFB134Q4QY38 66 aa13.76□□□□□ -0.21
SHMT2-210ENST00000553950 DCAF12Q5T6F0 453 aa13.76□□□□□ -0.21
SHMT2-210ENST00000553950 TMEM164Q5U3C3 297 aa13.76□□□□□ -0.21
SHMT2-210ENST00000553950 FAM219BQ5XKK7 198 aa13.76□□□□□ -0.21
SHMT2-210ENST00000553950 TMEM198Q66K66 360 aa13.76□□□□□ -0.21
SHMT2-210ENST00000553950 RHBDD2Q6NTF9 364 aa13.76□□□□□ -0.21
SHMT2-210ENST00000553950 MTDHQ86UE4 582 aaKnown RBP13.76□□□□□ -0.21
SHMT2-210ENST00000553950 NATD1Q8N6N6 113 aa13.76□□□□□ -0.21
SHMT2-210ENST00000553950 BMPERQ8N8U9 685 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms