RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 A0A1W2PRB8 838 aa25.12■■□□□ 1.61
CCDC88C-205ENST00000553403 DPPA5A6NC42 116 aa25.12■■□□□ 1.61
CCDC88C-205ENST00000553403 DLGAP1O14490 977 aa25.12■■□□□ 1.61
CCDC88C-205ENST00000553403 TNFP01375 233 aa25.12■■□□□ 1.61
CCDC88C-205ENST00000553403 F3P13726 295 aa25.12■■□□□ 1.61
CCDC88C-205ENST00000553403 ARFIP1P53367 373 aa25.12■■□□□ 1.61
CCDC88C-205ENST00000553403 PRSS53Q2L4Q9 553 aa25.12■■□□□ 1.61
CCDC88C-205ENST00000553403 SLC30A9Q6PML9 568 aa25.12■■□□□ 1.61
CCDC88C-205ENST00000553403 CARM1Q86X55 608 aa25.12■■□□□ 1.61
CCDC88C-205ENST00000553403 PLD3Q8IV08 490 aa25.12■■□□□ 1.61
CCDC88C-205ENST00000553403 ST13P4Q8IZP2 240 aaPredicted RBP25.12■■□□□ 1.61
CCDC88C-205ENST00000553403 ZNF687Q8N1G0 1237 aa25.12■■□□□ 1.61
CCDC88C-205ENST00000553403 PNPT1Q8TCS8 783 aaKnown RBP25.12■■□□□ 1.61
CCDC88C-205ENST00000553403 TOE1Q96GM8 510 aaKnown RBP25.12■■□□□ 1.61
CCDC88C-205ENST00000553403 DPH7Q9BTV6 452 aa25.12■■□□□ 1.61
CCDC88C-205ENST00000553403 TAS2R9Q9NYW1 312 aa25.12■■□□□ 1.61
CCDC88C-205ENST00000553403 TAAR2Q9P1P5 351 aa25.12■■□□□ 1.61
CCDC88C-205ENST00000553403 KLF15Q9UIH9 416 aa25.12■■□□□ 1.61
CCDC88C-205ENST00000553403 LRIT2A6NDA9 550 aa25.11■■□□□ 1.61
CCDC88C-205ENST00000553403 ZNF23P17027 643 aa25.11■■□□□ 1.61
CCDC88C-205ENST00000553403 KDELR2P33947 212 aa25.11■■□□□ 1.61
CCDC88C-205ENST00000553403 SLC19A1P41440 591 aa25.11■■□□□ 1.61
CCDC88C-205ENST00000553403 OR4C11Q6IEV9 310 aa25.11■■□□□ 1.61
CCDC88C-205ENST00000553403 ZNF425Q6IV72 752 aa25.11■■□□□ 1.61
CCDC88C-205ENST00000553403 NRROSQ86YC3 692 aa25.11■■□□□ 1.61
CCDC88C-205ENST00000553403 FBXL6Q8N531 539 aa25.11■■□□□ 1.61
CCDC88C-205ENST00000553403 OR13H1Q8NG92 308 aa25.11■■□□□ 1.61
CCDC88C-205ENST00000553403 OR4E2Q8NGC2 313 aa25.11■■□□□ 1.61
CCDC88C-205ENST00000553403 OR52N2Q8NGI0 321 aa25.11■■□□□ 1.61
CCDC88C-205ENST00000553403 TFAP2CQ92754 450 aa25.11■■□□□ 1.61
CCDC88C-205ENST00000553403 SLC22A18Q96BI1 424 aa25.11■■□□□ 1.61
CCDC88C-205ENST00000553403 ANKRD60Q9BZ19 345 aa25.11■■□□□ 1.61
CCDC88C-205ENST00000553403 SLC6A16Q9GZN6 736 aa25.11■■□□□ 1.61
CCDC88C-205ENST00000553403 TWSG1Q9GZX9 223 aa25.11■■□□□ 1.61
CCDC88C-205ENST00000553403 RAD21L1Q9H4I0 556 aa25.11■■□□□ 1.61
CCDC88C-205ENST00000553403 WSB2Q9NYS7 404 aaPredicted RBP25.11■■□□□ 1.61
CCDC88C-205ENST00000553403 MYO10Q9HD67 2058 aa25.11■■□□□ 1.61
CCDC88C-205ENST00000553403 ISM1B1AKI9 464 aa25.1■■□□□ 1.61
CCDC88C-205ENST00000553403 EI24O14681 340 aa25.1■■□□□ 1.61
CCDC88C-205ENST00000553403 HAT1O14929 419 aa25.1■■□□□ 1.61
CCDC88C-205ENST00000553403 FAM58BPP0C7Q3 252 aa25.1■■□□□ 1.61
CCDC88C-205ENST00000553403 IL9P15248 144 aa25.1■■□□□ 1.61
CCDC88C-205ENST00000553403 PCGF2P35227 344 aa25.1■■□□□ 1.61
CCDC88C-205ENST00000553403 ADPRMQ3LIE5 342 aa25.1■■□□□ 1.61
CCDC88C-205ENST00000553403 ZFPM2Q8WW38 1151 aa25.1■■□□□ 1.61
CCDC88C-205ENST00000553403 SLC35A5Q9BS91 424 aa25.1■■□□□ 1.61
CCDC88C-205ENST00000553403 CST1P01037 141 aa25.1■■□□□ 1.61
CCDC88C-205ENST00000553403 RPS9P46781 194 aaKnown RBP25.1■■□□□ 1.61
CCDC88C-205ENST00000553403 ILF3Q12906 894 aaKnown RBP eCLIP25.1■■□□□ 1.61
CCDC88C-205ENST00000553403 MFSD9Q8NBP5 474 aa25.1■■□□□ 1.61
CCDC88C-205ENST00000553403 TMBIM1Q969X1 311 aa25.1■■□□□ 1.61
CCDC88C-205ENST00000553403 DPH2Q9BQC3 489 aaPredicted RBP25.1■■□□□ 1.61
CCDC88C-205ENST00000553403 LMAN1LQ9HAT1 526 aa25.1■■□□□ 1.61
CCDC88C-205ENST00000553403 DUSP12Q9UNI6 340 aa25.1■■□□□ 1.61
CCDC88C-205ENST00000553403 A0A0A6YYD5 115 aa25.09■■□□□ 1.61
CCDC88C-205ENST00000553403 TNFAIP8O95379 198 aa25.09■■□□□ 1.61
CCDC88C-205ENST00000553403 SERPIND1P05546 499 aa25.09■■□□□ 1.61
CCDC88C-205ENST00000553403 MAGEA2P43356 314 aa25.09■■□□□ 1.61
CCDC88C-205ENST00000553403 MVDP53602 400 aa25.09■■□□□ 1.61
CCDC88C-205ENST00000553403 FADDQ13158 208 aa25.09■■□□□ 1.61
CCDC88C-205ENST00000553403 KIAA1614Q5VZ46 1190 aa25.09■■□□□ 1.61
CCDC88C-205ENST00000553403 EIF3MQ7L2H7 374 aaKnown RBP25.09■■□□□ 1.61
CCDC88C-205ENST00000553403 ADHFE1Q8IWW8 467 aa25.09■■□□□ 1.61
CCDC88C-205ENST00000553403 FAM20CQ8IXL6 584 aa25.09■■□□□ 1.61
CCDC88C-205ENST00000553403 MMP21Q8N119 569 aa25.09■■□□□ 1.61
CCDC88C-205ENST00000553403 ZCCHC7Q8N3Z6 543 aaKnown RBP25.09■■□□□ 1.61
CCDC88C-205ENST00000553403 SVOPLQ8N434 492 aa25.09■■□□□ 1.61
CCDC88C-205ENST00000553403 C11orf65Q8NCR3 313 aa25.09■■□□□ 1.61
CCDC88C-205ENST00000553403 GPBAR1Q8TDU6 330 aa25.09■■□□□ 1.61
CCDC88C-205ENST00000553403 JPH3Q8WXH2 748 aaPredicted RBP25.09■■□□□ 1.61
CCDC88C-205ENST00000553403 OR5P2Q8WZ92 322 aa25.09■■□□□ 1.61
CCDC88C-205ENST00000553403 SRMSQ9H3Y6 488 aa25.09■■□□□ 1.61
CCDC88C-205ENST00000553403 ZNF696Q9H7X3 374 aa25.09■■□□□ 1.61
CCDC88C-205ENST00000553403 PCDHGA2Q9Y5H1 932 aa25.09■■□□□ 1.61
CCDC88C-205ENST00000553403 TMPRSS11DO60235 418 aa25.08■■□□□ 1.61
CCDC88C-205ENST00000553403 KRT75O95678 551 aa25.08■■□□□ 1.61
CCDC88C-205ENST00000553403 NTRK1P04629 796 aa25.08■■□□□ 1.61
CCDC88C-205ENST00000553403 CD6P30203 668 aa25.08■■□□□ 1.61
CCDC88C-205ENST00000553403 MERTKQ12866 999 aa25.08■■□□□ 1.61
CCDC88C-205ENST00000553403 MYBPC3Q14896 1274 aa25.08■■□□□ 1.61
CCDC88C-205ENST00000553403 KIR2DS3Q14952 304 aa25.08■■□□□ 1.61
CCDC88C-205ENST00000553403 TEAD4Q15561 434 aa25.08■■□□□ 1.61
CCDC88C-205ENST00000553403 LRRC23Q53EV4 343 aaPredicted RBP25.08■■□□□ 1.61
CCDC88C-205ENST00000553403 DDX59Q5T1V6 619 aaKnown RBP eCLIP25.08■■□□□ 1.61
CCDC88C-205ENST00000553403 CBLL1Q75N03 491 aa25.08■■□□□ 1.61
CCDC88C-205ENST00000553403 NAGSQ8N159 534 aa25.08■■□□□ 1.61
CCDC88C-205ENST00000553403 SLC22A18ASQ8N1D0 253 aa25.08■■□□□ 1.61
CCDC88C-205ENST00000553403 CLEC4FQ8N1N0 589 aa25.08■■□□□ 1.61
CCDC88C-205ENST00000553403 TSTD1Q8NFU3 115 aa25.08■■□□□ 1.61
CCDC88C-205ENST00000553403 ADI1Q9BV57 179 aa25.08■■□□□ 1.61
CCDC88C-205ENST00000553403 TRIM4Q9C037 500 aa25.08■■□□□ 1.61
CCDC88C-205ENST00000553403 AICDAQ9GZX7 198 aa25.08■■□□□ 1.61
CCDC88C-205ENST00000553403 GPR27Q9NS67 375 aa25.08■■□□□ 1.61
CCDC88C-205ENST00000553403 SMPD3Q9NY59 655 aaPredicted RBP25.08■■□□□ 1.61
CCDC88C-205ENST00000553403 PCDHGA4Q9Y5G9 962 aa25.08■■□□□ 1.61
CCDC88C-205ENST00000553403 LRP4O75096 1905 aa25.08■■□□□ 1.61
CCDC88C-205ENST00000553403 HEATR5BQ9P2D3 2071 aa25.07■■□□□ 1.6
CCDC88C-205ENST00000553403 UQCRC2P22695 453 aa25.07■■□□□ 1.6
CCDC88C-205ENST00000553403 SSR2P43308 183 aa25.07■■□□□ 1.6
CCDC88C-205ENST00000553403 MYBPC1Q00872 1141 aa25.07■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms