RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 EDF1O60869 148 aaKnown RBP16.34■□□□□ 0.21
LIME1-202ENST00000444951 ATP6AP2O75787 350 aa16.34■□□□□ 0.21
LIME1-202ENST00000444951 KIAA0754O94854 1291 aa16.34■□□□□ 0.21
LIME1-202ENST00000444951 ZNF28P17035 718 aa16.34■□□□□ 0.21
LIME1-202ENST00000444951 IL1RNP18510 177 aa16.34■□□□□ 0.21
LIME1-202ENST00000444951 CSTF3Q12996 717 aaKnown RBP16.34■□□□□ 0.21
LIME1-202ENST00000444951 NDUFA9Q16795 377 aa16.34■□□□□ 0.21
LIME1-202ENST00000444951 FAM214AQ32MH5 1076 aa16.34■□□□□ 0.21
LIME1-202ENST00000444951 LARP7Q4G0J3 582 aaKnown RBP eCLIP16.34■□□□□ 0.21
LIME1-202ENST00000444951 C10orf62Q5T681 223 aaPredicted RBP16.34■□□□□ 0.21
LIME1-202ENST00000444951 TMEM164Q5U3C3 297 aa16.34■□□□□ 0.21
LIME1-202ENST00000444951 TMEM214Q6NUQ4 689 aaKnown RBP16.34■□□□□ 0.21
LIME1-202ENST00000444951 BPHLQ86WA6 291 aaPredicted RBP16.34■□□□□ 0.21
LIME1-202ENST00000444951 WDR75Q8IWA0 830 aaKnown RBP16.34■□□□□ 0.21
LIME1-202ENST00000444951 PIWIL2Q8TC59 973 aaKnown RBP16.34■□□□□ 0.21
LIME1-202ENST00000444951 UTP15Q8TED0 518 aaKnown RBP16.34■□□□□ 0.21
LIME1-202ENST00000444951 MS4A6EQ96DS6 147 aa16.34■□□□□ 0.21
LIME1-202ENST00000444951 C19orf60Q96EN9 201 aa16.34■□□□□ 0.21
LIME1-202ENST00000444951 SEC16BQ96JE7 1060 aa16.34■□□□□ 0.21
LIME1-202ENST00000444951 FAR2Q96K12 515 aa16.34■□□□□ 0.21
LIME1-202ENST00000444951 C10orf90Q96M02 699 aa16.34■□□□□ 0.21
LIME1-202ENST00000444951 CENPKQ9BS16 269 aa16.34■□□□□ 0.21
LIME1-202ENST00000444951 MRPL1Q9BYD6 325 aaKnown RBP16.34■□□□□ 0.21
LIME1-202ENST00000444951 ULBP3Q9BZM4 244 aa16.34■□□□□ 0.21
LIME1-202ENST00000444951 CCDC134Q9H6E4 229 aa16.34■□□□□ 0.21
LIME1-202ENST00000444951 GIMAP2Q9UG22 337 aa16.34■□□□□ 0.21
LIME1-202ENST00000444951 TSC22D4Q9Y3Q8 395 aa16.34■□□□□ 0.21
LIME1-202ENST00000444951 SPTA1P02549 2419 aa16.34■□□□□ 0.21
LIME1-202ENST00000444951 A0A0A6YYC8 382 aaPredicted RBP16.33■□□□□ 0.2
LIME1-202ENST00000444951 FITM1A5D6W6 292 aa16.33■□□□□ 0.2
LIME1-202ENST00000444951 URADA6NGE7 173 aa16.33■□□□□ 0.2
LIME1-202ENST00000444951 ZNF860A6NHJ4 632 aa16.33■□□□□ 0.2
LIME1-202ENST00000444951 I3L1I5 382 aaPredicted RBP16.33■□□□□ 0.2
LIME1-202ENST00000444951 SLC28A1O00337 649 aa16.33■□□□□ 0.2
LIME1-202ENST00000444951 RGS14O43566 566 aa16.33■□□□□ 0.2
LIME1-202ENST00000444951 BTN3A2P78410 334 aa16.33■□□□□ 0.2
LIME1-202ENST00000444951 NR6A1Q15406 480 aa16.33■□□□□ 0.2
LIME1-202ENST00000444951 MUM1Q2TAK8 710 aa16.33■□□□□ 0.2
LIME1-202ENST00000444951 GALNTL6Q49A17 601 aa16.33■□□□□ 0.2
LIME1-202ENST00000444951 DEFB134Q4QY38 66 aa16.33■□□□□ 0.2
LIME1-202ENST00000444951 TMEM35AQ53FP2 167 aa16.33■□□□□ 0.2
LIME1-202ENST00000444951 MANEAQ5SRI9 462 aa16.33■□□□□ 0.2
LIME1-202ENST00000444951 DEPDC1Q5TB30 811 aa16.33■□□□□ 0.2
LIME1-202ENST00000444951 VWA5B1Q5TIE3 1220 aa16.33■□□□□ 0.2
LIME1-202ENST00000444951 TRIM40Q6P9F5 258 aa16.33■□□□□ 0.2
LIME1-202ENST00000444951 ABHD13Q7L211 337 aa16.33■□□□□ 0.2
LIME1-202ENST00000444951 PRSS41Q7RTY9 318 aa16.33■□□□□ 0.2
LIME1-202ENST00000444951 KIRREL3Q8IZU9 778 aa16.33■□□□□ 0.2
LIME1-202ENST00000444951 GBP7Q8N8V2 638 aaPredicted RBP16.33■□□□□ 0.2
LIME1-202ENST00000444951 OR9A4Q8NGU2 314 aa16.33■□□□□ 0.2
LIME1-202ENST00000444951 OR2T11Q8NH01 316 aa16.33■□□□□ 0.2
LIME1-202ENST00000444951 GAL3ST3Q96A11 431 aa16.33■□□□□ 0.2
LIME1-202ENST00000444951 RGMAQ96B86 450 aa16.33■□□□□ 0.2
LIME1-202ENST00000444951 C3orf30Q96M34 536 aa16.33■□□□□ 0.2
LIME1-202ENST00000444951 DDA1Q9BW61 102 aa16.33■□□□□ 0.2
LIME1-202ENST00000444951 ASPSCR1Q9BZE9 553 aa16.33■□□□□ 0.2
LIME1-202ENST00000444951 FAM107BQ9H098 131 aa16.33■□□□□ 0.2
LIME1-202ENST00000444951 COPS7BQ9H9Q2 264 aaPredicted RBP16.33■□□□□ 0.2
LIME1-202ENST00000444951 BRF2Q9HAW0 419 aa16.33■□□□□ 0.2
LIME1-202ENST00000444951 ANKHQ9HCJ1 492 aa16.33■□□□□ 0.2
LIME1-202ENST00000444951 NPHS2Q9NP85 383 aa16.33■□□□□ 0.2
LIME1-202ENST00000444951 NMRK1Q9NWW6 199 aa16.33■□□□□ 0.2
LIME1-202ENST00000444951 VPS29Q9UBQ0 182 aa16.33■□□□□ 0.2
LIME1-202ENST00000444951 USH1CQ9Y6N9 552 aa16.33■□□□□ 0.2
LIME1-202ENST00000444951 MAU2Q9Y6X3 613 aa16.33■□□□□ 0.2
LIME1-202ENST00000444951 GOLGA8QA0A0J9YX86 632 aa16.32■□□□□ 0.2
LIME1-202ENST00000444951 GOLGA8OA6NCC3 632 aa16.32■□□□□ 0.2
LIME1-202ENST00000444951 GOLGA8NF8WBI6 632 aa16.32■□□□□ 0.2
LIME1-202ENST00000444951 SGK494L7N484 410 aa16.32■□□□□ 0.2
LIME1-202ENST00000444951 HDAC3O15379 428 aa16.32■□□□□ 0.2
LIME1-202ENST00000444951 HSD3B1P14060 373 aa16.32■□□□□ 0.2
LIME1-202ENST00000444951 ALOX12P18054 663 aa16.32■□□□□ 0.2
LIME1-202ENST00000444951 HSD3B2P26439 372 aa16.32■□□□□ 0.2
LIME1-202ENST00000444951 LSP1P33241 339 aa16.32■□□□□ 0.2
LIME1-202ENST00000444951 SSR2P43308 183 aa16.32■□□□□ 0.2
LIME1-202ENST00000444951 SEC24CP53992 1094 aa16.32■□□□□ 0.2
LIME1-202ENST00000444951 ARSFP54793 590 aa16.32■□□□□ 0.2
LIME1-202ENST00000444951 TGM3Q08188 693 aa16.32■□□□□ 0.2
LIME1-202ENST00000444951 NFATC3Q12968 1075 aa16.32■□□□□ 0.2
LIME1-202ENST00000444951 SLC9A5Q14940 896 aa16.32■□□□□ 0.2
LIME1-202ENST00000444951 TRIM46Q7Z4K8 759 aa16.32■□□□□ 0.2
LIME1-202ENST00000444951 UBE3DQ7Z6J8 389 aa16.32■□□□□ 0.2
LIME1-202ENST00000444951 SLC38A9Q8NBW4 561 aa16.32■□□□□ 0.2
LIME1-202ENST00000444951 OR2L5Q8NG80 312 aa16.32■□□□□ 0.2
LIME1-202ENST00000444951 MMABQ96EY8 250 aaPredicted RBP16.32■□□□□ 0.2
LIME1-202ENST00000444951 RABEP2Q9H5N1 569 aa16.32■□□□□ 0.2
LIME1-202ENST00000444951 PFDN4Q9NQP4 134 aa16.32■□□□□ 0.2
LIME1-202ENST00000444951 VTI1BQ9UEU0 232 aa16.32■□□□□ 0.2
LIME1-202ENST00000444951 SRPK3Q9UPE1 567 aa16.32■□□□□ 0.2
LIME1-202ENST00000444951 NAALAD2Q9Y3Q0 740 aa16.32■□□□□ 0.2
LIME1-202ENST00000444951 PCDHB3Q9Y5E6 796 aa16.32■□□□□ 0.2
LIME1-202ENST00000444951 TRPC5OSA6NMA1 111 aa16.31■□□□□ 0.2
LIME1-202ENST00000444951 SLCO1B7G3V0H7 640 aa16.31■□□□□ 0.2
LIME1-202ENST00000444951 PLPP1O14494 284 aa16.31■□□□□ 0.2
LIME1-202ENST00000444951 DSCR3O14972 297 aa16.31■□□□□ 0.2
LIME1-202ENST00000444951 SLC28A2O43868 658 aa16.31■□□□□ 0.2
LIME1-202ENST00000444951 DIAPH2O60879 1101 aa16.31■□□□□ 0.2
LIME1-202ENST00000444951 CPNE3O75131 537 aaKnown RBP16.31■□□□□ 0.2
LIME1-202ENST00000444951 PEX11AO75192 247 aa16.31■□□□□ 0.2
LIME1-202ENST00000444951 SEC22BO75396 215 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms