RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 TMPRSS12Q86WS5 348 aa17.16■□□□□ 0.34
SDC1-203ENST00000403076 LIX1Q8N485 282 aa17.16■□□□□ 0.34
SDC1-203ENST00000403076 SMIM10Q96HG1 83 aa17.16■□□□□ 0.34
SDC1-203ENST00000403076 C10orf90Q96M02 699 aa17.16■□□□□ 0.34
SDC1-203ENST00000403076 TEFMQ96QE5 360 aaKnown RBP17.16■□□□□ 0.34
SDC1-203ENST00000403076 LHX9Q9NQ69 397 aa17.16■□□□□ 0.34
SDC1-203ENST00000403076 TXLNGQ9NUQ3 528 aa17.16■□□□□ 0.34
SDC1-203ENST00000403076 SIRT5Q9NXA8 310 aa17.16■□□□□ 0.34
SDC1-203ENST00000403076 PISDQ9UG56 409 aa17.16■□□□□ 0.34
SDC1-203ENST00000403076 NAALAD2Q9Y3Q0 740 aa17.16■□□□□ 0.34
SDC1-203ENST00000403076 H3BMH7 237 aa17.15■□□□□ 0.34
SDC1-203ENST00000403076 B3GALT2O43825 422 aa17.15■□□□□ 0.34
SDC1-203ENST00000403076 CCDC22O60826 627 aa17.15■□□□□ 0.34
SDC1-203ENST00000403076 SCRG1O75711 98 aa17.15■□□□□ 0.34
SDC1-203ENST00000403076 KLHL18O94889 574 aa17.15■□□□□ 0.34
SDC1-203ENST00000403076 ATXN8OSP0DMR3 200 aa17.15■□□□□ 0.34
SDC1-203ENST00000403076 FGF5P12034 268 aa17.15■□□□□ 0.34
SDC1-203ENST00000403076 IDO1P14902 403 aa17.15■□□□□ 0.34
SDC1-203ENST00000403076 ITIH1P19827 911 aa17.15■□□□□ 0.34
SDC1-203ENST00000403076 HIST1H1TP22492 207 aaPredicted RBP17.15■□□□□ 0.34
SDC1-203ENST00000403076 CERS1P27544 350 aa17.15■□□□□ 0.34
SDC1-203ENST00000403076 TPP2P29144 1249 aaPredicted RBP17.15■□□□□ 0.34
SDC1-203ENST00000403076 AVPR1BP47901 424 aa17.15■□□□□ 0.34
SDC1-203ENST00000403076 MAPK12P53778 367 aa17.15■□□□□ 0.34
SDC1-203ENST00000403076 RAE1P78406 368 aaKnown RBP17.15■□□□□ 0.34
SDC1-203ENST00000403076 TARDBPQ13148 414 aaKnown RBP eCLIP17.15■□□□□ 0.34
SDC1-203ENST00000403076 EIF3IQ13347 325 aaKnown RBP17.15■□□□□ 0.34
SDC1-203ENST00000403076 FAM53BQ14153 422 aa17.15■□□□□ 0.34
SDC1-203ENST00000403076 SLC9A5Q14940 896 aa17.15■□□□□ 0.34
SDC1-203ENST00000403076 YOD1Q5VVQ6 348 aaPredicted RBP17.15■□□□□ 0.34
SDC1-203ENST00000403076 GALNT18Q6P9A2 607 aa17.15■□□□□ 0.34
SDC1-203ENST00000403076 ZNF793Q6ZN11 406 aa17.15■□□□□ 0.34
SDC1-203ENST00000403076 MTDHQ86UE4 582 aaKnown RBP17.15■□□□□ 0.34
SDC1-203ENST00000403076 BMPERQ8N8U9 685 aa17.15■□□□□ 0.34
SDC1-203ENST00000403076 ACOT4Q8N9L9 421 aa17.15■□□□□ 0.34
SDC1-203ENST00000403076 OR9A4Q8NGU2 314 aa17.15■□□□□ 0.34
SDC1-203ENST00000403076 WDR36Q8NI36 951 aaKnown RBP17.15■□□□□ 0.34
SDC1-203ENST00000403076 RNF31Q96EP0 1072 aa17.15■□□□□ 0.34
SDC1-203ENST00000403076 SERINC2Q96SA4 455 aa17.15■□□□□ 0.34
SDC1-203ENST00000403076 ZNF717Q9BY31 904 aaPredicted RBP17.15■□□□□ 0.34
SDC1-203ENST00000403076 DDX31Q9H8H2 851 aaKnown RBP17.15■□□□□ 0.34
SDC1-203ENST00000403076 ACTR5Q9H9F9 607 aaPredicted RBP17.15■□□□□ 0.34
SDC1-203ENST00000403076 BAIAP2L1Q9UHR4 511 aa17.15■□□□□ 0.34
SDC1-203ENST00000403076 SRPK3Q9UPE1 567 aa17.15■□□□□ 0.34
SDC1-203ENST00000403076 A0A0A6YYC8 382 aaPredicted RBP17.14■□□□□ 0.33
SDC1-203ENST00000403076 ZNF860A6NHJ4 632 aa17.14■□□□□ 0.33
SDC1-203ENST00000403076 I3L1I5 382 aaPredicted RBP17.14■□□□□ 0.33
SDC1-203ENST00000403076 PLD2O14939 933 aa17.14■□□□□ 0.33
SDC1-203ENST00000403076 GALR3O60755 368 aaPredicted RBP17.14■□□□□ 0.33
SDC1-203ENST00000403076 DCTN3O75935 186 aa17.14■□□□□ 0.33
SDC1-203ENST00000403076 G6PDP11413 515 aa17.14■□□□□ 0.33
SDC1-203ENST00000403076 SNRPNP63162 240 aaKnown RBP17.14■□□□□ 0.33
SDC1-203ENST00000403076 SLAMF1Q13291 335 aa17.14■□□□□ 0.33
SDC1-203ENST00000403076 GSTA3Q16772 222 aa17.14■□□□□ 0.33
SDC1-203ENST00000403076 PWWP2BQ6NUJ5 590 aa17.14■□□□□ 0.33
SDC1-203ENST00000403076 NIPAL1Q6NVV3 410 aa17.14■□□□□ 0.33
SDC1-203ENST00000403076 CEACAM20Q6UY09 585 aa17.14■□□□□ 0.33
SDC1-203ENST00000403076 PRSS41Q7RTY9 318 aa17.14■□□□□ 0.33
SDC1-203ENST00000403076 METTL27Q8N6F8 245 aaPredicted RBP17.14■□□□□ 0.33
SDC1-203ENST00000403076 AMER3Q8N944 861 aa17.14■□□□□ 0.33
SDC1-203ENST00000403076 ADAMTS14Q8WXS8 1223 aa17.14■□□□□ 0.33
SDC1-203ENST00000403076 CLIP3Q96DZ5 547 aa17.14■□□□□ 0.33
SDC1-203ENST00000403076 FAM122AQ96E09 287 aa17.14■□□□□ 0.33
SDC1-203ENST00000403076 C11orf24Q96F05 449 aaPredicted RBP17.14■□□□□ 0.33
SDC1-203ENST00000403076 FCRL1Q96LA6 429 aa17.14■□□□□ 0.33
SDC1-203ENST00000403076 TSSK3Q96PN8 268 aa17.14■□□□□ 0.33
SDC1-203ENST00000403076 AIG1Q9NVV5 245 aa17.14■□□□□ 0.33
SDC1-203ENST00000403076 ASIC5Q9NY37 505 aa17.14■□□□□ 0.33
SDC1-203ENST00000403076 DHCR7Q9UBM7 475 aaKnown RBP17.14■□□□□ 0.33
SDC1-203ENST00000403076 CDC14AQ9UNH5 594 aa17.14■□□□□ 0.33
SDC1-203ENST00000403076 COL27A1Q8IZC6 1860 aaPredicted RBP17.14■□□□□ 0.33
SDC1-203ENST00000403076 ADAMTS20P59510 1910 aa17.13■□□□□ 0.33
SDC1-203ENST00000403076 FAM149AA5PLN7 773 aa17.13■□□□□ 0.33
SDC1-203ENST00000403076 SGK494L7N484 410 aa17.13■□□□□ 0.33
SDC1-203ENST00000403076 FCHO1O14526 889 aa17.13■□□□□ 0.33
SDC1-203ENST00000403076 MED26O95402 600 aa17.13■□□□□ 0.33
SDC1-203ENST00000403076 HBQ1P09105 142 aa17.13■□□□□ 0.33
SDC1-203ENST00000403076 ACPPP15309 386 aa17.13■□□□□ 0.33
SDC1-203ENST00000403076 SDC1P18827 310 aa17.13■□□□□ 0.33
SDC1-203ENST00000403076 NME5P56597 212 aa17.13■□□□□ 0.33
SDC1-203ENST00000403076 RAB15P59190 212 aa17.13■□□□□ 0.33
SDC1-203ENST00000403076 LARP7Q4G0J3 582 aaKnown RBP eCLIP17.13■□□□□ 0.33
SDC1-203ENST00000403076 C3orf38Q5JPI3 329 aa17.13■□□□□ 0.33
SDC1-203ENST00000403076 DCAF12Q5T6F0 453 aa17.13■□□□□ 0.33
SDC1-203ENST00000403076 FAM9CQ8IZT9 166 aa17.13■□□□□ 0.33
SDC1-203ENST00000403076 CACTIN-AS1Q8N1I8 211 aa17.13■□□□□ 0.33
SDC1-203ENST00000403076 GALNT15Q8N3T1 639 aa17.13■□□□□ 0.33
SDC1-203ENST00000403076 ZCCHC7Q8N3Z6 543 aaKnown RBP17.13■□□□□ 0.33
SDC1-203ENST00000403076 ARHGEF39Q8N4T4 335 aa17.13■□□□□ 0.33
SDC1-203ENST00000403076 CLHC1Q8NHS4 586 aa17.13■□□□□ 0.33
SDC1-203ENST00000403076 C16orf78Q8WTQ4 265 aa17.13■□□□□ 0.33
SDC1-203ENST00000403076 MMABQ96EY8 250 aaPredicted RBP17.13■□□□□ 0.33
SDC1-203ENST00000403076 ENAMQ9NRM1 1142 aa17.13■□□□□ 0.33
SDC1-203ENST00000403076 LYARQ9NX58 379 aaKnown RBP17.13■□□□□ 0.33
SDC1-203ENST00000403076 FBXW2Q9UKT8 454 aa17.13■□□□□ 0.33
SDC1-203ENST00000403076 COPG1Q9Y678 874 aaKnown RBP17.13■□□□□ 0.33
SDC1-203ENST00000403076 SCN3AQ9NY46 2000 aa17.13■□□□□ 0.33
SDC1-203ENST00000403076 KNTC1P50748 2209 aa17.13■□□□□ 0.33
SDC1-203ENST00000403076 A0A0A6YYD5 115 aa17.12■□□□□ 0.33
SDC1-203ENST00000403076 DSCR3O14972 297 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms