RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 IGFL2Q6UWQ7 119 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 GPR155Q7Z3F1 870 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 SPATA19Q7Z5L4 167 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 ZNF675Q8TD23 568 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 TWIST2Q8WVJ9 160 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 TESCQ96BS2 214 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 CTHRC1Q96CG8 243 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 ZNF681Q96N22 645 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 UNKQ9C0B0 810 aaKnown RBP6.63□□□□□ -1.35
LIMA1-202ENST00000394943 ILKAPQ9H0C8 392 aaPredicted RBP6.63□□□□□ -1.35
LIMA1-202ENST00000394943 PRORYQ9H606 182 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 MLXIPLQ9NP71 852 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 SEMA3GQ9NS98 782 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 MRGBPQ9NV56 204 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 VPS29Q9UBQ0 182 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 WDFY3Q8IZQ1 3526 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 ASXL3Q9C0F0 2248 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 MED19A0JLT2 244 aaPredicted RBP6.63□□□□□ -1.35
LIMA1-202ENST00000394943 TRABD2BA6NFA1 517 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 MEN1O00255 615 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 OR1F1O43749 312 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 PTPN4P29074 926 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 ADSLP30566 484 aaPredicted RBP6.63□□□□□ -1.35
LIMA1-202ENST00000394943 MAP3K8P41279 467 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 MAGEA8P43361 318 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 HTR6P50406 440 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 TNFRSF17Q02223 184 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 TGM3Q08188 693 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 PDCD4Q53EL6 469 aaKnown RBP6.63□□□□□ -1.35
LIMA1-202ENST00000394943 METTL21CQ5VZV1 264 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 FAM20CQ8IXL6 584 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 ZNF781Q8N8C0 355 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 ANKS4BQ8N8V4 417 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 NFAM1Q8NET5 270 aaPredicted RBP6.63□□□□□ -1.35
LIMA1-202ENST00000394943 OR2Y1Q8NGV0 311 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 GOT1L1Q8NHS2 421 aaPredicted RBP6.63□□□□□ -1.35
LIMA1-202ENST00000394943 PIWIL2Q8TC59 973 aaKnown RBP6.63□□□□□ -1.35
LIMA1-202ENST00000394943 TSPEARQ8WU66 669 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 ESAMQ96AP7 390 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 TM4SF18Q96CE8 201 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 SEMA4BQ9NPR2 832 aaPredicted RBP6.63□□□□□ -1.35
LIMA1-202ENST00000394943 PHF11Q9UIL8 331 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 PRDM4Q9UKN5 801 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 PCDHA9Q9Y5H5 950 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 A0A088AWK7 358 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 SMIM23A6NLE4 172 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 WASHC1A8K0Z3 465 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 MYO1GB0I1T2 1018 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 HDAC3O15379 428 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 EFSO43281 561 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 ATXN8OSP0DMR3 200 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 PRPS2P11908 318 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 ZNF10P21506 573 aaPredicted RBP6.62□□□□□ -1.35
LIMA1-202ENST00000394943 TIA1P31483 386 aaKnown RBP eCLIP6.62□□□□□ -1.35
LIMA1-202ENST00000394943 VSX2P58304 361 aaPredicted RBP6.62□□□□□ -1.35
LIMA1-202ENST00000394943 RPS13P62277 151 aaKnown RBP6.62□□□□□ -1.35
LIMA1-202ENST00000394943 SSPNQ14714 243 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 TOR1AIP1Q5JTV8 583 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 ADNP2Q6IQ32 1131 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 PROSER1Q86XN7 944 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 DNAJB14Q8TBM8 379 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 FGF11Q92914 225 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 ANKRD9Q96BM1 317 aaPredicted RBP6.62□□□□□ -1.35
LIMA1-202ENST00000394943 PPP3R2Q96LZ3 170 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 REXO4Q9GZR2 422 aaKnown RBP6.62□□□□□ -1.35
LIMA1-202ENST00000394943 ACTR8Q9H981 624 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 ZNF304Q9HCX3 659 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 MID1IP1Q9NPA3 183 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 ANKDD1BA6NHY2 528 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 ULK1O75385 1050 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 ZNF888P0CJ79 500 aaPredicted RBP6.62□□□□□ -1.35
LIMA1-202ENST00000394943 ITIH1P19827 911 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 JAK1P23458 1154 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 CCR10P46092 362 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 AVPR1BP47901 424 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 UCNP55089 124 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 MAD2L1Q13257 205 aaPredicted RBP6.62□□□□□ -1.35
LIMA1-202ENST00000394943 NKG7Q16617 165 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 NKAIN1Q4KMZ8 207 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 FHL5Q5TD97 284 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 TMEM81Q6P7N7 255 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 KCT2Q8NC54 265 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 LSM14AQ8ND56 463 aaKnown RBP6.62□□□□□ -1.35
LIMA1-202ENST00000394943 ZNF248Q8NDW4 579 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 C17orf47Q8NEP4 570 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 OR8K3Q8NH51 312 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 CT55Q8WUE5 264 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 TANKQ92844 425 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 C3orf30Q96M34 536 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 WDR77Q9BQA1 342 aaPredicted RBP6.62□□□□□ -1.35
LIMA1-202ENST00000394943 NDC1Q9BTX1 674 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 TRIM4Q9C037 500 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 ACTL8Q9H568 366 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 AHSPQ9NZD4 102 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 GPR179Q6PRD1 2367 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 LOC101059948A0A1B0GTJ6 334 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 TRPC5OSA6NMA1 111 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 RGS14O43566 566 aa6.62□□□□□ -1.35
LIMA1-202ENST00000394943 LYPLA1O75608 230 aaPredicted RBP6.62□□□□□ -1.35
LIMA1-202ENST00000394943 ATP1B1P05026 303 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms