RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 SEMA6AQ9H2E6 1030 aa13.62□□□□□ -0.23
C9orf3-202ENST00000297979 GORASP2Q9H8Y8 452 aa13.62□□□□□ -0.23
C9orf3-202ENST00000297979 SPASTQ9UBP0 616 aa13.62□□□□□ -0.23
C9orf3-202ENST00000297979 CLIC1O00299 241 aa13.61□□□□□ -0.23
C9orf3-202ENST00000297979 RTCAO00442 366 aaKnown RBP13.61□□□□□ -0.23
C9orf3-202ENST00000297979 HAT1O14929 419 aa13.61□□□□□ -0.23
C9orf3-202ENST00000297979 CAPN5O15484 640 aaPredicted RBP13.61□□□□□ -0.23
C9orf3-202ENST00000297979 NDUFS2O75306 463 aa13.61□□□□□ -0.23
C9orf3-202ENST00000297979 ENDOUP21128 410 aaKnown RBP13.61□□□□□ -0.23
C9orf3-202ENST00000297979 MAPK12P53778 367 aa13.61□□□□□ -0.23
C9orf3-202ENST00000297979 PLCL1Q15111 1095 aa13.61□□□□□ -0.23
C9orf3-202ENST00000297979 KIAA1614Q5VZ46 1190 aa13.61□□□□□ -0.23
C9orf3-202ENST00000297979 HMBOX1Q6NT76 420 aa13.61□□□□□ -0.23
C9orf3-202ENST00000297979 NUDT13Q86X67 352 aa13.61□□□□□ -0.23
C9orf3-202ENST00000297979 TICAM1Q8IUC6 712 aa13.61□□□□□ -0.23
C9orf3-202ENST00000297979 ADGRF3Q8IZF5 1079 aa13.61□□□□□ -0.23
C9orf3-202ENST00000297979 TRPV3Q8NET8 790 aa13.61□□□□□ -0.23
C9orf3-202ENST00000297979 SLC22A18Q96BI1 424 aa13.61□□□□□ -0.23
C9orf3-202ENST00000297979 PHF12Q96QT6 1004 aa13.61□□□□□ -0.23
C9orf3-202ENST00000297979 CAAP1Q9H8G2 361 aa13.61□□□□□ -0.23
C9orf3-202ENST00000297979 TAAR2Q9P1P5 351 aa13.61□□□□□ -0.23
C9orf3-202ENST00000297979 ERVK-11Q9UQG0 969 aa13.61□□□□□ -0.23
C9orf3-202ENST00000297979 BTN3A3O00478 584 aa13.61□□□□□ -0.23
C9orf3-202ENST00000297979 SERPIND1P05546 499 aa13.61□□□□□ -0.23
C9orf3-202ENST00000297979 ZCCHC18P0CG32 403 aa13.61□□□□□ -0.23
C9orf3-202ENST00000297979 ENGP17813 658 aa13.61□□□□□ -0.23
C9orf3-202ENST00000297979 ZP2Q05996 745 aa13.61□□□□□ -0.23
C9orf3-202ENST00000297979 SLC14A1Q13336 389 aa13.61□□□□□ -0.23
C9orf3-202ENST00000297979 ZNF542PQ5EBM4 170 aa13.61□□□□□ -0.23
C9orf3-202ENST00000297979 AMIGO2Q86SJ2 522 aa13.61□□□□□ -0.23
C9orf3-202ENST00000297979 C10orf111Q8N326 155 aa13.61□□□□□ -0.23
C9orf3-202ENST00000297979 ICA1LQ8NDH6 482 aa13.61□□□□□ -0.23
C9orf3-202ENST00000297979 REXO5Q96IC2 774 aaKnown RBP13.61□□□□□ -0.23
C9orf3-202ENST00000297979 SARGQ9BW04 601 aa13.61□□□□□ -0.23
C9orf3-202ENST00000297979 SNX7Q9UNH6 387 aa13.61□□□□□ -0.23
C9orf3-202ENST00000297979 WBP11Q9Y2W2 641 aaKnown RBP13.61□□□□□ -0.23
C9orf3-202ENST00000297979 SLCO1B1Q9Y6L6 691 aa13.61□□□□□ -0.23
C9orf3-202ENST00000297979 CXCR6O00574 342 aa13.6□□□□□ -0.23
C9orf3-202ENST00000297979 SCELO95171 688 aa13.6□□□□□ -0.23
C9orf3-202ENST00000297979 FCGR1AP12314 374 aa13.6□□□□□ -0.23
C9orf3-202ENST00000297979 AHRP35869 848 aa13.6□□□□□ -0.23
C9orf3-202ENST00000297979 PXNP49023 591 aaPredicted RBP13.6□□□□□ -0.23
C9orf3-202ENST00000297979 ZNF425Q6IV72 752 aa13.6□□□□□ -0.23
C9orf3-202ENST00000297979 SERPINA11Q86U17 422 aa13.6□□□□□ -0.23
C9orf3-202ENST00000297979 PARGQ86W56 976 aa13.6□□□□□ -0.23
C9orf3-202ENST00000297979 PAPD5Q8NDF8 572 aaKnown RBP13.6□□□□□ -0.23
C9orf3-202ENST00000297979 OR4A15Q8NGL6 344 aa13.6□□□□□ -0.23
C9orf3-202ENST00000297979 EME1Q96AY2 570 aa13.6□□□□□ -0.23
C9orf3-202ENST00000297979 VCXQ9H320 206 aa13.6□□□□□ -0.23
C9orf3-202ENST00000297979 LHX9Q9NQ69 397 aa13.6□□□□□ -0.23
C9orf3-202ENST00000297979 MIEF1Q9NQG6 463 aa13.6□□□□□ -0.23
C9orf3-202ENST00000297979 POT1Q9NUX5 634 aa13.6□□□□□ -0.23
C9orf3-202ENST00000297979 ADAM29Q9UKF5 820 aa13.6□□□□□ -0.23
C9orf3-202ENST00000297979 VPS4AQ9UN37 437 aa13.6□□□□□ -0.23
C9orf3-202ENST00000297979 VIPP01282 170 aa13.6□□□□□ -0.23
C9orf3-202ENST00000297979 CTSEP14091 401 aa13.6□□□□□ -0.23
C9orf3-202ENST00000297979 MLLT1Q03111 559 aaPredicted RBP13.6□□□□□ -0.23
C9orf3-202ENST00000297979 GPR18Q14330 331 aa13.6□□□□□ -0.23
C9orf3-202ENST00000297979 KIR2DS3Q14952 304 aa13.6□□□□□ -0.23
C9orf3-202ENST00000297979 ZIC1Q15915 447 aa13.6□□□□□ -0.23
C9orf3-202ENST00000297979 TMEM35AQ53FP2 167 aa13.6□□□□□ -0.23
C9orf3-202ENST00000297979 GPR155Q7Z3F1 870 aa13.6□□□□□ -0.23
C9orf3-202ENST00000297979 GJD3Q8N144 294 aa13.6□□□□□ -0.23
C9orf3-202ENST00000297979 AGPAT4Q9NRZ5 378 aa13.6□□□□□ -0.23
C9orf3-202ENST00000297979 ZNF282Q9UDV7 671 aaPredicted RBP13.6□□□□□ -0.23
C9orf3-202ENST00000297979 AP1M2Q9Y6Q5 423 aa13.6□□□□□ -0.23
C9orf3-202ENST00000297979 V9GYQ6 96 aa13.6□□□□□ -0.23
C9orf3-202ENST00000297979 C1orf226A1L170 272 aa13.59□□□□□ -0.23
C9orf3-202ENST00000297979 LRIT2A6NDA9 550 aa13.59□□□□□ -0.23
C9orf3-202ENST00000297979 TPST1O60507 370 aa13.59□□□□□ -0.23
C9orf3-202ENST00000297979 CELA2BP08218 269 aaPredicted RBP13.59□□□□□ -0.23
C9orf3-202ENST00000297979 HOXB3P14651 431 aaPredicted RBP13.59□□□□□ -0.23
C9orf3-202ENST00000297979 GPX2P18283 190 aa13.59□□□□□ -0.23
C9orf3-202ENST00000297979 FASP25445 335 aa13.59□□□□□ -0.23
C9orf3-202ENST00000297979 CD27P26842 260 aa13.59□□□□□ -0.23
C9orf3-202ENST00000297979 GSTM5P46439 218 aa13.59□□□□□ -0.23
C9orf3-202ENST00000297979 BLKP51451 505 aa13.59□□□□□ -0.23
C9orf3-202ENST00000297979 KLC1Q07866 573 aa13.59□□□□□ -0.23
C9orf3-202ENST00000297979 CWF19L1Q69YN2 538 aaKnown RBP13.59□□□□□ -0.23
C9orf3-202ENST00000297979 UBE3DQ7Z6J8 389 aa13.59□□□□□ -0.23
C9orf3-202ENST00000297979 TAF8Q7Z7C8 310 aa13.59□□□□□ -0.23
C9orf3-202ENST00000297979 OR52E4Q8NGH9 312 aa13.59□□□□□ -0.23
C9orf3-202ENST00000297979 NCLNQ969V3 563 aa13.59□□□□□ -0.23
C9orf3-202ENST00000297979 FAM162AQ96A26 154 aa13.59□□□□□ -0.23
C9orf3-202ENST00000297979 CIDECQ96AQ7 238 aaPredicted RBP13.59□□□□□ -0.23
C9orf3-202ENST00000297979 TBC1D17Q9HA65 648 aa13.59□□□□□ -0.23
C9orf3-202ENST00000297979 TPT1P8Q9HAU6 139 aa13.59□□□□□ -0.23
C9orf3-202ENST00000297979 CPNE7Q9UBL6 633 aa13.59□□□□□ -0.23
C9orf3-202ENST00000297979 SNRNP200O75643 2136 aaKnown RBP13.59□□□□□ -0.23
C9orf3-202ENST00000297979 OR5K4A6NMS3 321 aa13.59□□□□□ -0.23
C9orf3-202ENST00000297979 METTL12A8MUP2 240 aa13.59□□□□□ -0.23
C9orf3-202ENST00000297979 GPR37L1O60883 481 aa13.59□□□□□ -0.23
C9orf3-202ENST00000297979 BMP2P12643 396 aa13.59□□□□□ -0.23
C9orf3-202ENST00000297979 DDCP20711 480 aa13.59□□□□□ -0.23
C9orf3-202ENST00000297979 PPIBP23284 216 aaKnown RBP13.59□□□□□ -0.23
C9orf3-202ENST00000297979 GAB1Q13480 694 aa13.59□□□□□ -0.23
C9orf3-202ENST00000297979 ZNF551Q7Z340 670 aaPredicted RBP13.59□□□□□ -0.23
C9orf3-202ENST00000297979 BPHLQ86WA6 291 aaPredicted RBP13.59□□□□□ -0.23
C9orf3-202ENST00000297979 SPEM1Q8N4L4 309 aa13.59□□□□□ -0.23
C9orf3-202ENST00000297979 DEFB123Q8N688 67 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms