RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 VN1R1Q9GZP7 353 aa12.62□□□□□ -0.39
VPS28-201ENST00000292510 DMRT3Q9NQL9 472 aa12.62□□□□□ -0.39
VPS28-201ENST00000292510 LANCL2Q9NS86 450 aa12.62□□□□□ -0.39
VPS28-201ENST00000292510 ZNF225Q9UK10 706 aa12.62□□□□□ -0.39
VPS28-201ENST00000292510 FBXL4Q9UKA2 621 aa12.62□□□□□ -0.39
VPS28-201ENST00000292510 PCDHGA11Q9Y5H2 935 aa12.62□□□□□ -0.39
VPS28-201ENST00000292510 A6NL46 340 aa12.61□□□□□ -0.39
VPS28-201ENST00000292510 MAGEB17A8MXT2 336 aa12.61□□□□□ -0.39
VPS28-201ENST00000292510 FAM227AF5H4B4 570 aa12.61□□□□□ -0.39
VPS28-201ENST00000292510 K7EM74 188 aa12.61□□□□□ -0.39
VPS28-201ENST00000292510 AGPSO00116 658 aa12.61□□□□□ -0.39
VPS28-201ENST00000292510 ERLIN1O75477 346 aa12.61□□□□□ -0.39
VPS28-201ENST00000292510 OR4F21O95013 312 aa12.61□□□□□ -0.39
VPS28-201ENST00000292510 ETHE1O95571 254 aa12.61□□□□□ -0.39
VPS28-201ENST00000292510 OTCP00480 354 aa12.61□□□□□ -0.39
VPS28-201ENST00000292510 IGHEP01854 428 aa12.61□□□□□ -0.39
VPS28-201ENST00000292510 FHP07954 510 aa12.61□□□□□ -0.39
VPS28-201ENST00000292510 NR1D1P20393 614 aa12.61□□□□□ -0.39
VPS28-201ENST00000292510 SKP1P63208 163 aa12.61□□□□□ -0.39
VPS28-201ENST00000292510 EEF1A2Q05639 463 aaKnown RBP12.61□□□□□ -0.39
VPS28-201ENST00000292510 RAPSNQ13702 412 aa12.61□□□□□ -0.39
VPS28-201ENST00000292510 DCAF10Q5QP82 559 aa12.61□□□□□ -0.39
VPS28-201ENST00000292510 CEP85LQ5SZL2 805 aa12.61□□□□□ -0.39
VPS28-201ENST00000292510 NIPAL1Q6NVV3 410 aa12.61□□□□□ -0.39
VPS28-201ENST00000292510 TRIM40Q6P9F5 258 aa12.61□□□□□ -0.39
VPS28-201ENST00000292510 ZNF793Q6ZN11 406 aa12.61□□□□□ -0.39
VPS28-201ENST00000292510 LANCL3Q6ZV70 420 aa12.61□□□□□ -0.39
VPS28-201ENST00000292510 SLC22A9Q8IVM8 553 aa12.61□□□□□ -0.39
VPS28-201ENST00000292510 CA13Q8N1Q1 262 aa12.61□□□□□ -0.39
VPS28-201ENST00000292510 CCNYL1Q8N7R7 359 aa12.61□□□□□ -0.39
VPS28-201ENST00000292510 TMEM102Q8N9M5 508 aaPredicted RBP12.61□□□□□ -0.39
VPS28-201ENST00000292510 ARMC2Q8NEN0 867 aa12.61□□□□□ -0.39
VPS28-201ENST00000292510 OR11G2Q8NGC1 345 aa12.61□□□□□ -0.39
VPS28-201ENST00000292510 L3HYPDHQ96EM0 354 aa12.61□□□□□ -0.39
VPS28-201ENST00000292510 CMTM7Q96FZ5 175 aa12.61□□□□□ -0.39
VPS28-201ENST00000292510 ABHD17AQ96GS6 310 aa12.61□□□□□ -0.39
VPS28-201ENST00000292510 IP6K3Q96PC2 410 aa12.61□□□□□ -0.39
VPS28-201ENST00000292510 ZNF71Q9NQZ8 489 aaPredicted RBP12.61□□□□□ -0.39
VPS28-201ENST00000292510 MKS1Q9NXB0 559 aa12.61□□□□□ -0.39
VPS28-201ENST00000292510 PLLPQ9Y342 182 aa12.61□□□□□ -0.39
VPS28-201ENST00000292510 SPTA1P02549 2419 aa12.6□□□□□ -0.39
VPS28-201ENST00000292510 RGS16O15492 202 aaPredicted RBP12.6□□□□□ -0.39
VPS28-201ENST00000292510 B4GALT2O60909 372 aa12.6□□□□□ -0.39
VPS28-201ENST00000292510 CPA3P15088 417 aa12.6□□□□□ -0.39
VPS28-201ENST00000292510 ACPPP15309 386 aa12.6□□□□□ -0.39
VPS28-201ENST00000292510 SERPINB1P30740 379 aa12.6□□□□□ -0.39
VPS28-201ENST00000292510 PIK3CBP42338 1070 aa12.6□□□□□ -0.39
VPS28-201ENST00000292510 MTTPP55157 894 aa12.6□□□□□ -0.39
VPS28-201ENST00000292510 TUBB8Q3ZCM7 444 aa12.6□□□□□ -0.39
VPS28-201ENST00000292510 SGO1Q5FBB7 561 aa12.6□□□□□ -0.39
VPS28-201ENST00000292510 TCHHL1Q5QJ38 904 aaPredicted RBP12.6□□□□□ -0.39
VPS28-201ENST00000292510 BEND6Q5SZJ8 279 aaPredicted RBP12.6□□□□□ -0.39
VPS28-201ENST00000292510 DEPDC1Q5TB30 811 aa12.6□□□□□ -0.39
VPS28-201ENST00000292510 KHDRBS2Q5VWX1 349 aaKnown RBP12.6□□□□□ -0.39
VPS28-201ENST00000292510 TTC19Q6DKK2 380 aaPredicted RBP12.6□□□□□ -0.39
VPS28-201ENST00000292510 CHSY3Q70JA7 882 aa12.6□□□□□ -0.39
VPS28-201ENST00000292510 MED25Q71SY5 747 aa12.6□□□□□ -0.39
VPS28-201ENST00000292510 C10orf107Q8IVU9 208 aa12.6□□□□□ -0.39
VPS28-201ENST00000292510 TSLPQ969D9 159 aa12.6□□□□□ -0.39
VPS28-201ENST00000292510 TBC1D20Q96BZ9 403 aa12.6□□□□□ -0.39
VPS28-201ENST00000292510 REPS1Q96D71 796 aa12.6□□□□□ -0.39
VPS28-201ENST00000292510 FER1L6-AS2Q96M78 137 aa12.6□□□□□ -0.39
VPS28-201ENST00000292510 FAM111AQ96PZ2 611 aa12.6□□□□□ -0.39
VPS28-201ENST00000292510 OR1F2PQ96R84 312 aa12.6□□□□□ -0.39
VPS28-201ENST00000292510 SMC6Q96SB8 1091 aa12.6□□□□□ -0.39
VPS28-201ENST00000292510 IQCGQ9H095 443 aaKnown RBP12.6□□□□□ -0.39
VPS28-201ENST00000292510 CENPHQ9H3R5 247 aa12.6□□□□□ -0.39
VPS28-201ENST00000292510 GSTO2Q9H4Y5 243 aa12.6□□□□□ -0.39
VPS28-201ENST00000292510 PRDM7Q9NQW5 492 aa12.6□□□□□ -0.39
VPS28-201ENST00000292510 FARSBQ9NSD9 589 aaKnown RBP12.6□□□□□ -0.39
VPS28-201ENST00000292510 SLC17A7Q9P2U7 560 aa12.6□□□□□ -0.39
VPS28-201ENST00000292510 ADGRE2Q9UHX3 823 aa12.6□□□□□ -0.39
VPS28-201ENST00000292510 TSC22D4Q9Y3Q8 395 aa12.6□□□□□ -0.39
VPS28-201ENST00000292510 IGHV3-20A0A0C4DH32 117 aa12.59□□□□□ -0.39
VPS28-201ENST00000292510 CCDC151A5D8V7 595 aa12.59□□□□□ -0.39
VPS28-201ENST00000292510 B3GALT2O43825 422 aa12.59□□□□□ -0.39
VPS28-201ENST00000292510 PDGFAP04085 211 aa12.59□□□□□ -0.39
VPS28-201ENST00000292510 C8orf89P0DMQ9 161 aa12.59□□□□□ -0.39
VPS28-201ENST00000292510 COX6A1P12074 109 aa12.59□□□□□ -0.39
VPS28-201ENST00000292510 RNH1P13489 461 aaKnown RBP12.59□□□□□ -0.39
VPS28-201ENST00000292510 HPDP32754 393 aaPredicted RBP12.59□□□□□ -0.39
VPS28-201ENST00000292510 RAP1GDS1P52306 607 aa12.59□□□□□ -0.39
VPS28-201ENST00000292510 NAGLUP54802 743 aa12.59□□□□□ -0.39
VPS28-201ENST00000292510 RRADP55042 308 aa12.59□□□□□ -0.39
VPS28-201ENST00000292510 BTG2P78543 158 aa12.59□□□□□ -0.39
VPS28-201ENST00000292510 PHEXP78562 749 aa12.59□□□□□ -0.39
VPS28-201ENST00000292510 RHAGQ02094 409 aa12.59□□□□□ -0.39
VPS28-201ENST00000292510 TGM3Q08188 693 aa12.59□□□□□ -0.39
VPS28-201ENST00000292510 PCLAFQ15004 111 aa12.59□□□□□ -0.39
VPS28-201ENST00000292510 GGTA1PQ4G0N0 100 aa12.59□□□□□ -0.39
VPS28-201ENST00000292510 TMEM35AQ53FP2 167 aa12.59□□□□□ -0.39
VPS28-201ENST00000292510 FRG2Q64ET8 278 aa12.59□□□□□ -0.39
VPS28-201ENST00000292510 TMEM205Q6UW68 189 aa12.59□□□□□ -0.39
VPS28-201ENST00000292510 PARP9Q8IXQ6 854 aa12.59□□□□□ -0.39
VPS28-201ENST00000292510 CDYL2Q8N8U2 506 aa12.59□□□□□ -0.39
VPS28-201ENST00000292510 FAM47BQ8NA70 645 aa12.59□□□□□ -0.39
VPS28-201ENST00000292510 CLEC1AQ8NC01 280 aa12.59□□□□□ -0.39
VPS28-201ENST00000292510 LSM14AQ8ND56 463 aaKnown RBP12.59□□□□□ -0.39
VPS28-201ENST00000292510 TMEM52Q8NDY8 209 aa12.59□□□□□ -0.39
VPS28-201ENST00000292510 FDCSPQ8NFU4 85 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms