RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	ERI3	O43414	337 aa	Known RBP	11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	AKAP10	O43572	662 aa		11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	SRPX2	O60687	465 aa	Predicted RBP	11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	PRAMEF10	O60809	474 aa		11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	SMIM10L1	P0DMW3	83 aa		11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	ITGAX	P20702	1163 aa		11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	S100A3	P33764	101 aa		11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	PGM1	P36871	562 aa		11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	HPCAL1	P37235	193 aa		11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	RPL3	P39023	403 aa	Known RBP	11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	DGKQ	P52824	942 aa		11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	PLA2G16	P53816	162 aa		11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	C2orf80	Q0P641	193 aa		11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	PGS1	Q32NB8	556 aa		11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	INAVA	Q3KP66	663 aa		11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	FAM174B	Q3ZCQ3	159 aa		11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	AMZ1	Q400G9	498 aa		11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	FRMPD2B	Q6IN97	320 aa		11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	FAM71E1	Q6IPT2	247 aa		11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	ABHD17C	Q6PCB6	329 aa		11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	DBX2	Q6ZNG2	339 aa		11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	MSANTD1	Q6ZTZ1	278 aa		11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	IKBIP	Q70UQ0	350 aa		11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	R3HCC1L	Q7Z5L2	792 aa	Known RBP	11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	SPRED1	Q7Z699	444 aa		11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	NUDT13	Q86X67	352 aa		11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	MCAT	Q8IVS2	390 aa	Known RBP	11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	OR4N4	Q8N0Y3	316 aa		11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	ARHGAP24	Q8N264	748 aa		11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	TMEM132C	Q8N3T6	1108 aa		11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	KIF2B	Q8N4N8	673 aa		11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	GAL3ST3	Q96A11	431 aa		11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	MCUR1	Q96AQ8	359 aa		11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	VPS33A	Q96AX1	596 aa		11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	MTERF3	Q96E29	417 aa		11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	SMIM10	Q96HG1	83 aa		11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	SLC45A3	Q96JT2	553 aa		11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	FCRL4	Q96PJ5	515 aa		11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	MACROD1	Q9BQ69	325 aa		11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	NLN	Q9BYT8	704 aa		11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	ROGDI	Q9GZN7	287 aa		11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	KCNH6	Q9H252	994 aa		11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	SMOC1	Q9H4F8	434 aa		11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	SYNPO2L	Q9H987	977 aa		11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	FAM60A	Q9NP50	221 aa		11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	LHX9	Q9NQ69	397 aa		11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	PRDM7	Q9NQW5	492 aa		11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	DNAAF2	Q9NVR5	837 aa	Known RBP	11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	SEMA5B	Q9P283	1151 aa		11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	MAP10	Q9P2G4	905 aa		11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	ATP6V1H	Q9UI12	483 aa		11.21	□□□□□ -0.61
CLN6-223	ENST00000637823	MN1	Q10571	1320 aa	Predicted RBP	11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	IGHV5-51	A0A0C4DH38	117 aa		11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	ASPDH	A6ND91	283 aa		11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	RTCA	O00442	366 aa	Known RBP	11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	SCAMP2	O15127	329 aa	Known RBP	11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	KIF1C	O43896	1103 aa	Known RBP	11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	LRAT	O95237	230 aa		11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	ZBTB11	O95625	1053 aa	Predicted RBP	11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	STATH	P02808	62 aa		11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	GBA	P04062	536 aa		11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	PGR	P06401	933 aa		11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	ZNF806	P0C7X5	589 aa		11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	CKMT1A	P12532	417 aa		11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	ATP5A1	P25705	553 aa	Known RBP	11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	SSR2	P43308	183 aa		11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	MAPK12	P53778	367 aa		11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	GFER	P55789	205 aa		11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	TAS2R50	P59544	299 aa		11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	KCNJ2	P63252	427 aa		11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	CFHR1	Q03591	330 aa		11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	MAPKAPK3	Q16644	382 aa		11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	UGT8	Q16880	541 aa		11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	HKDC1	Q2TB90	917 aa		11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	PROX2	Q3B8N5	592 aa		11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	TIGD2	Q4W5G0	525 aa		11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	SPANXN4	Q5MJ08	99 aa		11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	CPTP	Q5TA50	214 aa		11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	GUSBP11	Q6P575	273 aa		11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	USP53	Q70EK8	1073 aa		11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	CAMKMT	Q7Z624	323 aa		11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	RETREG3	Q86VR2	466 aa		11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	DEFB107A	Q8IZN7	70 aa		11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	PGAM4	Q8N0Y7	254 aa		11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	ZCCHC7	Q8N3Z6	543 aa	Known RBP	11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	DPP10	Q8N608	796 aa		11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	KCT2	Q8NC54	265 aa		11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	OR8J2	Q8NGG1	315 aa		11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	DNAJB8	Q8NHS0	232 aa		11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	CDC26	Q8NHZ8	85 aa		11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	NUDT8	Q8WV74	236 aa		11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	GFM2	Q969S9	779 aa	Known RBP	11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	TM4SF18	Q96CE8	201 aa		11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	COQ8B	Q96D53	544 aa		11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	TEFM	Q96QE5	360 aa	Known RBP	11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	OR52E6	Q96RD3	313 aa		11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	DPYSL5	Q9BPU6	564 aa		11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	HOPX	Q9BPY8	73 aa	Predicted RBP	11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	C17orf62	Q9BQA9	187 aa		11.2	□□□□□ -0.62
CLN6-223	ENST00000637823	CCDC3	Q9BQI4	270 aa		11.2	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms