RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 SMIM10L1P0DMW3 83 aa17.28■□□□□ 0.36
CLN3-241ENST00000635861 RNH1P13489 461 aaKnown RBP17.28■□□□□ 0.36
CLN3-241ENST00000635861 GSTM2P28161 218 aa17.28■□□□□ 0.36
CLN3-241ENST00000635861 SMSP52788 366 aa17.28■□□□□ 0.36
CLN3-241ENST00000635861 OC90Q02509 493 aaPredicted RBP17.28■□□□□ 0.36
CLN3-241ENST00000635861 SPINK14Q6IE38 97 aa17.28■□□□□ 0.36
CLN3-241ENST00000635861 NXPE4Q6UWF7 544 aa17.28■□□□□ 0.36
CLN3-241ENST00000635861 THOC6Q86W42 341 aaKnown RBP17.28■□□□□ 0.36
CLN3-241ENST00000635861 ARMC10Q8N2F6 343 aa17.28■□□□□ 0.36
CLN3-241ENST00000635861 TTLQ8NG68 377 aa17.28■□□□□ 0.36
CLN3-241ENST00000635861 SMIM10Q96HG1 83 aa17.28■□□□□ 0.36
CLN3-241ENST00000635861 SEC16BQ96JE7 1060 aa17.28■□□□□ 0.36
CLN3-241ENST00000635861 PTCHD1Q96NR3 888 aa17.28■□□□□ 0.36
CLN3-241ENST00000635861 OLFM1Q99784 485 aa17.28■□□□□ 0.36
CLN3-241ENST00000635861 UNKQ9C0B0 810 aaKnown RBP17.28■□□□□ 0.36
CLN3-241ENST00000635861 CDCP1Q9H5V8 836 aa17.28■□□□□ 0.36
CLN3-241ENST00000635861 PRDM9Q9NQV7 894 aa17.28■□□□□ 0.36
CLN3-241ENST00000635861 KLHL1Q9NR64 748 aa17.28■□□□□ 0.36
CLN3-241ENST00000635861 NSMCE4AQ9NXX6 385 aa17.28■□□□□ 0.36
CLN3-241ENST00000635861 CHMP2BQ9UQN3 213 aa17.28■□□□□ 0.36
CLN3-241ENST00000635861 ADGRG4Q8IZF6 3080 aa17.28■□□□□ 0.36
CLN3-241ENST00000635861 FBN2P35556 2912 aa17.27■□□□□ 0.36
CLN3-241ENST00000635861 ESRRAP11474 423 aaPredicted RBP17.27■□□□□ 0.35
CLN3-241ENST00000635861 TRHRP34981 398 aaPredicted RBP17.27■□□□□ 0.35
CLN3-241ENST00000635861 ARL4CP56559 192 aa17.27■□□□□ 0.35
CLN3-241ENST00000635861 TERF2Q15554 542 aa17.27■□□□□ 0.35
CLN3-241ENST00000635861 GALNTL5Q7Z4T8 443 aa17.27■□□□□ 0.35
CLN3-241ENST00000635861 SPPL2CQ8IUH8 684 aa17.27■□□□□ 0.35
CLN3-241ENST00000635861 MCEMP1Q8IX19 187 aa17.27■□□□□ 0.35
CLN3-241ENST00000635861 EID3Q8N140 333 aa17.27■□□□□ 0.35
CLN3-241ENST00000635861 ANKRD53Q8N9V6 530 aa17.27■□□□□ 0.35
CLN3-241ENST00000635861 POGLUT1Q8NBL1 392 aa17.27■□□□□ 0.35
CLN3-241ENST00000635861 CFAP36Q96G28 342 aa17.27■□□□□ 0.35
CLN3-241ENST00000635861 SPNS1Q9H2V7 528 aa17.27■□□□□ 0.35
CLN3-241ENST00000635861 POPDC3Q9HBV1 291 aa17.27■□□□□ 0.35
CLN3-241ENST00000635861 ANKRD10Q9NXR5 420 aa17.27■□□□□ 0.35
CLN3-241ENST00000635861 SLC17A6Q9P2U8 582 aa17.27■□□□□ 0.35
CLN3-241ENST00000635861 MMACHCQ9Y4U1 282 aa17.27■□□□□ 0.35
CLN3-241ENST00000635861 OARD1Q9Y530 152 aa17.27■□□□□ 0.35
CLN3-241ENST00000635861 IGKV3D-11A0A0A0MRZ8 115 aa17.26■□□□□ 0.35
CLN3-241ENST00000635861 FCHO1O14526 889 aa17.26■□□□□ 0.35
CLN3-241ENST00000635861 CTIFO43310 598 aaKnown RBP17.26■□□□□ 0.35
CLN3-241ENST00000635861 NME2P1O60361 137 aa17.26■□□□□ 0.35
CLN3-241ENST00000635861 B4GALT2O60909 372 aa17.26■□□□□ 0.35
CLN3-241ENST00000635861 SLC25A12O75746 678 aa17.26■□□□□ 0.35
CLN3-241ENST00000635861 PRF1P14222 555 aa17.26■□□□□ 0.35
CLN3-241ENST00000635861 NME2P22392 152 aa17.26■□□□□ 0.35
CLN3-241ENST00000635861 HTR1EP28566 365 aa17.26■□□□□ 0.35
CLN3-241ENST00000635861 HPDP32754 393 aaPredicted RBP17.26■□□□□ 0.35
CLN3-241ENST00000635861 CYB561P49447 251 aa17.26■□□□□ 0.35
CLN3-241ENST00000635861 STXBP1P61764 594 aaKnown RBP17.26■□□□□ 0.35
CLN3-241ENST00000635861 GNG11P61952 73 aa17.26■□□□□ 0.35
CLN3-241ENST00000635861 ETF1P62495 437 aaKnown RBP17.26■□□□□ 0.35
CLN3-241ENST00000635861 MGAT5Q09328 741 aa17.26■□□□□ 0.35
CLN3-241ENST00000635861 CBLBQ13191 982 aa17.26■□□□□ 0.35
CLN3-241ENST00000635861 C3AR1Q16581 482 aa17.26■□□□□ 0.35
CLN3-241ENST00000635861 TRMT10BQ6PF06 316 aaKnown RBP17.26■□□□□ 0.35
CLN3-241ENST00000635861 GDF7Q7Z4P5 450 aa17.26■□□□□ 0.35
CLN3-241ENST00000635861 TMPRSS11BQ86T26 416 aa17.26■□□□□ 0.35
CLN3-241ENST00000635861 ADAMTSL2Q86TH1 951 aa17.26■□□□□ 0.35
CLN3-241ENST00000635861 SIAH3Q8IW03 269 aa17.26■□□□□ 0.35
CLN3-241ENST00000635861 SRRM1Q8IYB3 904 aaKnown RBP17.26■□□□□ 0.35
CLN3-241ENST00000635861 KLHDC8AQ8IYD2 350 aa17.26■□□□□ 0.35
CLN3-241ENST00000635861 GHDCQ8N2G8 530 aa17.26■□□□□ 0.35
CLN3-241ENST00000635861 TSNARE1Q96NA8 513 aa17.26■□□□□ 0.35
CLN3-241ENST00000635861 NPLQ9BXD5 320 aaPredicted RBP17.26■□□□□ 0.35
CLN3-241ENST00000635861 PITHD1Q9GZP4 211 aaPredicted RBP17.26■□□□□ 0.35
CLN3-241ENST00000635861 SLC22A14Q9Y267 594 aa17.26■□□□□ 0.35
CLN3-241ENST00000635861 FAM227AF5H4B4 570 aa17.25■□□□□ 0.35
CLN3-241ENST00000635861 FANCGO15287 622 aa17.25■□□□□ 0.35
CLN3-241ENST00000635861 GNAZP19086 355 aa17.25■□□□□ 0.35
CLN3-241ENST00000635861 ELAVL4P26378 380 aaKnown RBP17.25■□□□□ 0.35
CLN3-241ENST00000635861 TPP2P29144 1249 aaPredicted RBP17.25■□□□□ 0.35
CLN3-241ENST00000635861 MLF1P58340 268 aa17.25■□□□□ 0.35
CLN3-241ENST00000635861 OLR1P78380 273 aa17.25■□□□□ 0.35
CLN3-241ENST00000635861 DR1Q01658 176 aa17.25■□□□□ 0.35
CLN3-241ENST00000635861 HYAL2Q12891 473 aa17.25■□□□□ 0.35
CLN3-241ENST00000635861 ZC3HC1Q86WB0 502 aaKnown RBP17.25■□□□□ 0.35
CLN3-241ENST00000635861 ADAMTS18Q8TE60 1221 aa17.25■□□□□ 0.35
CLN3-241ENST00000635861 GAL3ST3Q96A11 431 aa17.25■□□□□ 0.35
CLN3-241ENST00000635861 TMEM125Q96AQ2 219 aa17.25■□□□□ 0.35
CLN3-241ENST00000635861 VPS39Q96JC1 886 aa17.25■□□□□ 0.35
CLN3-241ENST00000635861 CAPS2Q9BXY5 557 aa17.25■□□□□ 0.35
CLN3-241ENST00000635861 HES7Q9BYE0 225 aa17.25■□□□□ 0.35
CLN3-241ENST00000635861 SH3BGRL2Q9UJC5 107 aa17.25■□□□□ 0.35
CLN3-241ENST00000635861 A0A088AWK7 358 aa17.24■□□□□ 0.35
CLN3-241ENST00000635861 FAM95CA0A1B0GW59 222 aa17.24■□□□□ 0.35
CLN3-241ENST00000635861 NPIPA5E9PKD4 350 aa17.24■□□□□ 0.35
CLN3-241ENST00000635861 ASNA1O43681 348 aa17.24■□□□□ 0.35
CLN3-241ENST00000635861 MAN1A2O60476 641 aa17.24■□□□□ 0.35
CLN3-241ENST00000635861 ZNF24P17028 368 aa17.24■□□□□ 0.35
CLN3-241ENST00000635861 ZNF10P21506 573 aaPredicted RBP17.24■□□□□ 0.35
CLN3-241ENST00000635861 GRNP28799 593 aaKnown RBP17.24■□□□□ 0.35
CLN3-241ENST00000635861 HLCSP50747 726 aa17.24■□□□□ 0.35
CLN3-241ENST00000635861 RAB8AP61006 207 aa17.24■□□□□ 0.35
CLN3-241ENST00000635861 RBBP5Q15291 538 aaKnown RBP17.24■□□□□ 0.35
CLN3-241ENST00000635861 MAPKAPK3Q16644 382 aa17.24■□□□□ 0.35
CLN3-241ENST00000635861 PNPLA5Q7Z6Z6 429 aaPredicted RBP17.24■□□□□ 0.35
CLN3-241ENST00000635861 NFAM1Q8NET5 270 aaPredicted RBP17.24■□□□□ 0.35
CLN3-241ENST00000635861 CREB3L4Q8TEY5 395 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms