RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 DPH1Q9BZG8 443 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 SLC7A5P2Q9GIP4 190 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 NSRP1Q9H0G5 558 aaKnown RBP14.26□□□□□ -0.13
TRIM28-207ENST00000597136 ELOVL6Q9H5J4 265 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 LHX9Q9NQ69 397 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 RUVBL1Q9Y265 456 aaKnown RBP14.26□□□□□ -0.13
TRIM28-207ENST00000597136 SSUH2Q9Y2M2 353 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 MRPS2Q9Y399 296 aaKnown RBP14.26□□□□□ -0.13
TRIM28-207ENST00000597136 PCDHGA4Q9Y5G9 962 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 AP1M2Q9Y6Q5 423 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 ZFYVE26Q68DK2 2539 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 FITM1A5D6W6 292 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 PIP5K1BO14986 540 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 RRP8O43159 456 aaKnown RBP14.26□□□□□ -0.13
TRIM28-207ENST00000597136 SKAP2O75563 359 aaPredicted RBP14.26□□□□□ -0.13
TRIM28-207ENST00000597136 PDYNP01213 254 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 TCN2P20062 427 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 ITGAXP20702 1163 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 STAT5AP42229 794 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 SCTRP47872 440 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 NEK2P51955 445 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 RPS15AP62244 130 aaKnown RBP14.26□□□□□ -0.13
TRIM28-207ENST00000597136 TLE3Q04726 772 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 BTKQ06187 659 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 RBBP5Q15291 538 aaKnown RBP14.26□□□□□ -0.13
TRIM28-207ENST00000597136 ADNP2Q6IQ32 1131 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 RHBDD2Q6NTF9 364 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 SCIMPQ6UWF3 145 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 RNF165Q6ZSG1 346 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 ARHGEF39Q8N4T4 335 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 ESX1Q8N693 406 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 METTL27Q8N6F8 245 aaPredicted RBP14.26□□□□□ -0.13
TRIM28-207ENST00000597136 CSNK1A1LQ8N752 337 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 MFSD9Q8NBP5 474 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 MR1Q95460 341 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 REPS1Q96D71 796 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 CRELD1Q96HD1 420 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 C10orf90Q96M02 699 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 GBP5Q96PP8 586 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 NDC1Q9BTX1 674 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 NUF2Q9BZD4 464 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 CHST8Q9H2A9 424 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 KCNK13Q9HB14 408 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 ENAMQ9NRM1 1142 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 CUTCQ9NTM9 273 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 IL17BQ9UHF5 180 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 DCTN4Q9UJW0 460 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 TSC22D4Q9Y3Q8 395 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 PTGDR2Q9Y5Y4 395 aa14.26□□□□□ -0.13
TRIM28-207ENST00000597136 MRPS18BQ9Y676 258 aaKnown RBP14.26□□□□□ -0.13
TRIM28-207ENST00000597136 TRPC5OSA6NMA1 111 aa14.25□□□□□ -0.13
TRIM28-207ENST00000597136 FAM107AO95990 144 aa14.25□□□□□ -0.13
TRIM28-207ENST00000597136 CCNYL3P0C7X3 344 aa14.25□□□□□ -0.13
TRIM28-207ENST00000597136 LINC00032P0C843 101 aa14.25□□□□□ -0.13
TRIM28-207ENST00000597136 PCNAP12004 261 aa14.25□□□□□ -0.13
TRIM28-207ENST00000597136 LIFP15018 202 aa14.25□□□□□ -0.13
TRIM28-207ENST00000597136 PIK3CBP42338 1070 aa14.25□□□□□ -0.13
TRIM28-207ENST00000597136 AQP5P55064 265 aa14.25□□□□□ -0.13
TRIM28-207ENST00000597136 ZNF33BQ06732 778 aa14.25□□□□□ -0.13
TRIM28-207ENST00000597136 ABHD18Q0P651 414 aa14.25□□□□□ -0.13
TRIM28-207ENST00000597136 SF3A3Q12874 501 aaKnown RBP eCLIP14.25□□□□□ -0.139e-7■■■■■ 27.3
TRIM28-207ENST00000597136 GRM7Q14831 915 aa14.25□□□□□ -0.13
TRIM28-207ENST00000597136 SLC9A5Q14940 896 aa14.25□□□□□ -0.13
TRIM28-207ENST00000597136 C10orf62Q5T681 223 aaPredicted RBP14.25□□□□□ -0.13
TRIM28-207ENST00000597136 VWA5B1Q5TIE3 1220 aa14.25□□□□□ -0.13
TRIM28-207ENST00000597136 FAM69BQ5VUD6 431 aa14.25□□□□□ -0.13
TRIM28-207ENST00000597136 ZNF517Q6ZMY9 492 aaPredicted RBP14.25□□□□□ -0.13
TRIM28-207ENST00000597136 LRRC69Q6ZNQ3 347 aa14.25□□□□□ -0.13
TRIM28-207ENST00000597136 TRIM46Q7Z4K8 759 aa14.25□□□□□ -0.13
TRIM28-207ENST00000597136 DDIASQ8IXT1 998 aa14.25□□□□□ -0.13
TRIM28-207ENST00000597136 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP14.25□□□□□ -0.132e-7■■■■■ 38.4
TRIM28-207ENST00000597136 SHISA5Q8N114 240 aa14.25□□□□□ -0.13
TRIM28-207ENST00000597136 TBC1D19Q8N5T2 526 aa14.25□□□□□ -0.13
TRIM28-207ENST00000597136 KCT2Q8NC54 265 aa14.25□□□□□ -0.13
TRIM28-207ENST00000597136 HUS1BQ8NHY5 278 aa14.25□□□□□ -0.13
TRIM28-207ENST00000597136 CT55Q8WUE5 264 aa14.25□□□□□ -0.13
TRIM28-207ENST00000597136 SELENOMQ8WWX9 145 aa14.25□□□□□ -0.13
TRIM28-207ENST00000597136 RERGQ96A58 199 aaPredicted RBP14.25□□□□□ -0.13
TRIM28-207ENST00000597136 C19orf60Q96EN9 201 aa14.25□□□□□ -0.13
TRIM28-207ENST00000597136 C3orf30Q96M34 536 aa14.25□□□□□ -0.13
TRIM28-207ENST00000597136 LRFN5Q96NI6 719 aa14.25□□□□□ -0.13
TRIM28-207ENST00000597136 HBEGFQ99075 208 aa14.25□□□□□ -0.13
TRIM28-207ENST00000597136 MTERF1Q99551 399 aaKnown RBP14.25□□□□□ -0.13
TRIM28-207ENST00000597136 CCT7Q99832 543 aa14.25□□□□□ -0.13
TRIM28-207ENST00000597136 ELAC2Q9BQ52 826 aaKnown RBP14.25□□□□□ -0.13
TRIM28-207ENST00000597136 RHBGQ9H310 441 aa14.25□□□□□ -0.13
TRIM28-207ENST00000597136 MEAF6Q9HAF1 191 aa14.25□□□□□ -0.13
TRIM28-207ENST00000597136 SLC22A11Q9NSA0 550 aa14.25□□□□□ -0.13
TRIM28-207ENST00000597136 PSD3Q9NYI0 1048 aa14.25□□□□□ -0.13
TRIM28-207ENST00000597136 NDOR1Q9UHB4 597 aa14.25□□□□□ -0.13
TRIM28-207ENST00000597136 CROTQ9UKG9 612 aa14.25□□□□□ -0.13
TRIM28-207ENST00000597136 CNTRLQ7Z7A1 2325 aa14.25□□□□□ -0.13
TRIM28-207ENST00000597136 PCSK5Q92824 1860 aa14.24□□□□□ -0.13
TRIM28-207ENST00000597136 SERTM1A2A2V5 107 aa14.24□□□□□ -0.13
TRIM28-207ENST00000597136 TERTO14746 1132 aaKnown RBP14.24□□□□□ -0.13
TRIM28-207ENST00000597136 KLK3P07288 261 aaPredicted RBP14.24□□□□□ -0.13
TRIM28-207ENST00000597136 AHRP35869 848 aa14.24□□□□□ -0.13
TRIM28-207ENST00000597136 DLSTP36957 453 aa14.24□□□□□ -0.13
TRIM28-207ENST00000597136 OR1D4P47884 311 aa14.24□□□□□ -0.13
TRIM28-207ENST00000597136 FOXL2P58012 376 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms