RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 RNH1P13489 461 aaKnown RBP16.04■□□□□ 0.16
CLN3-216ENST00000565316 ZNF37AP17032 561 aaPredicted RBP16.04■□□□□ 0.16
CLN3-216ENST00000565316 TRHRP34981 398 aaPredicted RBP16.04■□□□□ 0.16
CLN3-216ENST00000565316 MLF1P58340 268 aa16.04■□□□□ 0.16
CLN3-216ENST00000565316 BTG2P78543 158 aa16.04■□□□□ 0.16
CLN3-216ENST00000565316 CDKL1Q00532 357 aa16.04■□□□□ 0.16
CLN3-216ENST00000565316 NAA30Q147X3 362 aaPredicted RBP16.04■□□□□ 0.16
CLN3-216ENST00000565316 HP1BP3Q5SSJ5 553 aaPredicted RBP16.04■□□□□ 0.16
CLN3-216ENST00000565316 GALNTL5Q7Z4T8 443 aa16.04■□□□□ 0.16
CLN3-216ENST00000565316 SPPL2CQ8IUH8 684 aa16.04■□□□□ 0.16
CLN3-216ENST00000565316 CREB3L4Q8TEY5 395 aa16.04■□□□□ 0.16
CLN3-216ENST00000565316 PWWP2AQ96N64 755 aa16.04■□□□□ 0.16
CLN3-216ENST00000565316 AIF1LQ9BQI0 150 aa16.04■□□□□ 0.16
CLN3-216ENST00000565316 AICDAQ9GZX7 198 aa16.04■□□□□ 0.16
CLN3-216ENST00000565316 KLHL31Q9H511 634 aa16.04■□□□□ 0.16
CLN3-216ENST00000565316 LRFN1Q9P244 771 aa16.04■□□□□ 0.16
CLN3-216ENST00000565316 SH3BGRL2Q9UJC5 107 aa16.04■□□□□ 0.16
CLN3-216ENST00000565316 TINAGQ9UJW2 476 aa16.04■□□□□ 0.16
CLN3-216ENST00000565316 CHMP2BQ9UQN3 213 aa16.04■□□□□ 0.16
CLN3-216ENST00000565316 DYRK1BQ9Y463 629 aa16.04■□□□□ 0.16
CLN3-216ENST00000565316 PSAT1Q9Y617 370 aa16.04■□□□□ 0.16
CLN3-216ENST00000565316 PKDREJQ9NTG1 2253 aa16.03■□□□□ 0.16
CLN3-216ENST00000565316 URADA6NGE7 173 aa16.03■□□□□ 0.16
CLN3-216ENST00000565316 SAGE2PA6NJ88 616 aa16.03■□□□□ 0.16
CLN3-216ENST00000565316 C4orf51C9J302 202 aa16.03■□□□□ 0.16
CLN3-216ENST00000565316 NPIPA5E9PKD4 350 aa16.03■□□□□ 0.16
CLN3-216ENST00000565316 CDC7O00311 574 aa16.03■□□□□ 0.16
CLN3-216ENST00000565316 ZSCAN12O43309 604 aa16.03■□□□□ 0.16
CLN3-216ENST00000565316 ASNA1O43681 348 aa16.03■□□□□ 0.16
CLN3-216ENST00000565316 NME2P1O60361 137 aa16.03■□□□□ 0.16
CLN3-216ENST00000565316 NME2P22392 152 aa16.03■□□□□ 0.16
CLN3-216ENST00000565316 TPP2P29144 1249 aaPredicted RBP16.03■□□□□ 0.16
CLN3-216ENST00000565316 PTGER4P35408 488 aa16.03■□□□□ 0.16
CLN3-216ENST00000565316 RAB8AP61006 207 aa16.03■□□□□ 0.16
CLN3-216ENST00000565316 OC90Q02509 493 aaPredicted RBP16.03■□□□□ 0.16
CLN3-216ENST00000565316 PNPLA5Q7Z6Z6 429 aaPredicted RBP16.03■□□□□ 0.16
CLN3-216ENST00000565316 ZC3HC1Q86WB0 502 aaKnown RBP16.03■□□□□ 0.16
CLN3-216ENST00000565316 ZNF227Q86WZ6 799 aa16.03■□□□□ 0.16
CLN3-216ENST00000565316 CHERPQ8IWX8 916 aaKnown RBP16.03■□□□□ 0.16
CLN3-216ENST00000565316 NKAPQ8N5F7 415 aaKnown RBP16.03■□□□□ 0.16
CLN3-216ENST00000565316 MAGED4Q96JG8 741 aa16.03■□□□□ 0.16
CLN3-216ENST00000565316 TRIM51Q9BSJ1 452 aa16.03■□□□□ 0.16
CLN3-216ENST00000565316 TSPAN10Q9H1Z9 355 aaPredicted RBP16.03■□□□□ 0.16
CLN3-216ENST00000565316 PRDM9Q9NQV7 894 aa16.03■□□□□ 0.16
CLN3-216ENST00000565316 NPIPA1Q9UND3 350 aa16.03■□□□□ 0.16
CLN3-216ENST00000565316 SLC22A14Q9Y267 594 aa16.03■□□□□ 0.16
CLN3-216ENST00000565316 KCNE2Q9Y6J6 123 aa16.03■□□□□ 0.16
CLN3-216ENST00000565316 ADGRG4Q8IZF6 3080 aa16.02■□□□□ 0.16
CLN3-216ENST00000565316 TP73O15350 636 aa16.02■□□□□ 0.16
CLN3-216ENST00000565316 SLC25A12O75746 678 aa16.02■□□□□ 0.16
CLN3-216ENST00000565316 TCP1P17987 556 aaKnown RBP16.02■□□□□ 0.16
CLN3-216ENST00000565316 MAOAP21397 527 aa16.02■□□□□ 0.16
CLN3-216ENST00000565316 HNF4AP41235 474 aa16.02■□□□□ 0.16
CLN3-216ENST00000565316 HNMTP50135 292 aa16.02■□□□□ 0.16
CLN3-216ENST00000565316 HLCSP50747 726 aa16.02■□□□□ 0.16
CLN3-216ENST00000565316 MGAT5Q09328 741 aa16.02■□□□□ 0.16
CLN3-216ENST00000565316 CBLBQ13191 982 aa16.02■□□□□ 0.16
CLN3-216ENST00000565316 RNFT1Q5M7Z0 435 aa16.02■□□□□ 0.16
CLN3-216ENST00000565316 KLHDC8AQ8IYD2 350 aa16.02■□□□□ 0.16
CLN3-216ENST00000565316 CYP4X1Q8N118 509 aa16.02■□□□□ 0.16
CLN3-216ENST00000565316 CA13Q8N1Q1 262 aa16.02■□□□□ 0.16
CLN3-216ENST00000565316 FAM98AQ8NCA5 519 aaKnown RBP16.02■□□□□ 0.16
CLN3-216ENST00000565316 MCMBPQ9BTE3 642 aa16.02■□□□□ 0.16
CLN3-216ENST00000565316 NECTIN3Q9NQS3 549 aa16.02■□□□□ 0.16
CLN3-216ENST00000565316 MOCS1Q9NZB8 636 aa16.02■□□□□ 0.16
CLN3-216ENST00000565316 ZFATQ9P243 1243 aa16.02■□□□□ 0.16
CLN3-216ENST00000565316 MEMO1Q9Y316 297 aa16.02■□□□□ 0.16
CLN3-216ENST00000565316 OARD1Q9Y530 152 aa16.02■□□□□ 0.16
CLN3-216ENST00000565316 POLQO75417 2590 aa16.02■□□□□ 0.15
CLN3-216ENST00000565316 NCOA6Q14686 2063 aaPredicted RBP16.02■□□□□ 0.15
CLN3-216ENST00000565316 AKAP9Q99996 3911 aa16.02■□□□□ 0.15
CLN3-216ENST00000565316 PSMD12O00232 456 aaPredicted RBP16.01■□□□□ 0.15
CLN3-216ENST00000565316 ESRRAP11474 423 aaPredicted RBP16.01■□□□□ 0.15
CLN3-216ENST00000565316 ELAVL4P26378 380 aaKnown RBP16.01■□□□□ 0.15
CLN3-216ENST00000565316 SLC6A12P48065 614 aa16.01■□□□□ 0.15
CLN3-216ENST00000565316 CYB561P49447 251 aa16.01■□□□□ 0.15
CLN3-216ENST00000565316 SMSP52788 366 aa16.01■□□□□ 0.15
CLN3-216ENST00000565316 ARL4CP56559 192 aa16.01■□□□□ 0.15
CLN3-216ENST00000565316 TAS2R39P59534 338 aa16.01■□□□□ 0.15
CLN3-216ENST00000565316 RBBP5Q15291 538 aaKnown RBP16.01■□□□□ 0.15
CLN3-216ENST00000565316 TERF2Q15554 542 aa16.01■□□□□ 0.15
CLN3-216ENST00000565316 MAPKAPK3Q16644 382 aa16.01■□□□□ 0.15
CLN3-216ENST00000565316 TMPRSS11BQ86T26 416 aa16.01■□□□□ 0.15
CLN3-216ENST00000565316 ARMC2Q8NEN0 867 aa16.01■□□□□ 0.15
CLN3-216ENST00000565316 RUNDC3BQ96NL0 473 aa16.01■□□□□ 0.15
CLN3-216ENST00000565316 PPIEQ9UNP9 301 aaKnown RBP16.01■□□□□ 0.15
CLN3-216ENST00000565316 MMACHCQ9Y4U1 282 aa16.01■□□□□ 0.15
CLN3-216ENST00000565316 FAM95CA0A1B0GW59 222 aa16■□□□□ 0.15
CLN3-216ENST00000565316 NPEPPSL1A6NEC2 478 aa16■□□□□ 0.15
CLN3-216ENST00000565316 SEC31AO94979 1220 aaKnown RBP16■□□□□ 0.15
CLN3-216ENST00000565316 ITGA8P53708 1063 aa16■□□□□ 0.15
CLN3-216ENST00000565316 DR1Q01658 176 aa16■□□□□ 0.15
CLN3-216ENST00000565316 TOR1AIP1Q5JTV8 583 aa16■□□□□ 0.15
CLN3-216ENST00000565316 SLCO4C1Q6ZQN7 724 aa16■□□□□ 0.15
CLN3-216ENST00000565316 CREG2Q8IUH2 290 aa16■□□□□ 0.15
CLN3-216ENST00000565316 GHDCQ8N2G8 530 aa16■□□□□ 0.15
CLN3-216ENST00000565316 APCDD1LQ8NCL9 501 aa16■□□□□ 0.15
CLN3-216ENST00000565316 ANKRD49Q8WVL7 239 aa16■□□□□ 0.15
CLN3-216ENST00000565316 DEFB126Q9BYW3 111 aa16■□□□□ 0.15
CLN3-216ENST00000565316 CLDN16Q9Y5I7 305 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms