RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 TNFRSF8P28908 595 aa12.65□□□□□ -0.38
CLK3-216ENST00000564468 SERPINB1P30740 379 aa12.65□□□□□ -0.38
CLK3-216ENST00000564468 HNF4AP41235 474 aa12.65□□□□□ -0.38
CLK3-216ENST00000564468 TGM3Q08188 693 aa12.65□□□□□ -0.38
CLK3-216ENST00000564468 E2F2Q14209 437 aa12.65□□□□□ -0.38
CLK3-216ENST00000564468 NAA30Q147X3 362 aaPredicted RBP12.65□□□□□ -0.38
CLK3-216ENST00000564468 PFKFB4Q16877 469 aa12.65□□□□□ -0.38
CLK3-216ENST00000564468 TECRLQ5HYJ1 363 aa12.65□□□□□ -0.38
CLK3-216ENST00000564468 AGAP7PQ5VUJ5 663 aa12.65□□□□□ -0.38
CLK3-216ENST00000564468 FAAH2Q6GMR7 532 aa12.65□□□□□ -0.38
CLK3-216ENST00000564468 ADGRD1Q6QNK2 874 aa12.65□□□□□ -0.38
CLK3-216ENST00000564468 RIPOR1Q6ZS17 1223 aa12.65□□□□□ -0.38
CLK3-216ENST00000564468 LCA5Q86VQ0 697 aa12.65□□□□□ -0.38
CLK3-216ENST00000564468 PDSS2Q86YH6 399 aa12.65□□□□□ -0.38
CLK3-216ENST00000564468 TMEM151BQ8IW70 566 aa12.65□□□□□ -0.38
CLK3-216ENST00000564468 PARP9Q8IXQ6 854 aa12.65□□□□□ -0.38
CLK3-216ENST00000564468 KBTBD2Q8IY47 623 aa12.65□□□□□ -0.38
CLK3-216ENST00000564468 ZADH2Q8N4Q0 377 aa12.65□□□□□ -0.38
CLK3-216ENST00000564468 PLPP5Q8NEB5 264 aa12.65□□□□□ -0.38
CLK3-216ENST00000564468 SRFBP1Q8NEF9 429 aaKnown RBP12.65□□□□□ -0.38
CLK3-216ENST00000564468 TBC1D20Q96BZ9 403 aa12.65□□□□□ -0.38
CLK3-216ENST00000564468 C8orf44Q96CB5 159 aa12.65□□□□□ -0.38
CLK3-216ENST00000564468 PEX11GQ96HA9 241 aa12.65□□□□□ -0.38
CLK3-216ENST00000564468 SMIM10Q96HG1 83 aa12.65□□□□□ -0.38
CLK3-216ENST00000564468 AGAP4Q96P64 663 aa12.65□□□□□ -0.38
CLK3-216ENST00000564468 GPR78Q96P69 363 aa12.65□□□□□ -0.38
CLK3-216ENST00000564468 TUBB6Q9BUF5 446 aa12.65□□□□□ -0.38
CLK3-216ENST00000564468 NPLQ9BXD5 320 aaPredicted RBP12.65□□□□□ -0.38
CLK3-216ENST00000564468 VN1R1Q9GZP7 353 aa12.65□□□□□ -0.38
CLK3-216ENST00000564468 RHBGQ9H310 441 aa12.65□□□□□ -0.38
CLK3-216ENST00000564468 ZNF552Q9H707 407 aaPredicted RBP12.65□□□□□ -0.38
CLK3-216ENST00000564468 CPSF2Q9P2I0 782 aaKnown RBP12.65□□□□□ -0.38
CLK3-216ENST00000564468 ADGRE2Q9UHX3 823 aa12.65□□□□□ -0.38
CLK3-216ENST00000564468 NBASA2RRP1 2371 aa12.65□□□□□ -0.38
CLK3-216ENST00000564468 IGHV1-45A0A0A0MS14 117 aa12.64□□□□□ -0.39
CLK3-216ENST00000564468 LRIT2A6NDA9 550 aa12.64□□□□□ -0.39
CLK3-216ENST00000564468 ZNF860A6NHJ4 632 aa12.64□□□□□ -0.39
CLK3-216ENST00000564468 CHST10O43529 356 aa12.64□□□□□ -0.39
CLK3-216ENST00000564468 SMIM24O75264 130 aa12.64□□□□□ -0.39
CLK3-216ENST00000564468 WFS1O76024 890 aa12.64□□□□□ -0.39
CLK3-216ENST00000564468 FAM153BP0C7A2 387 aa12.64□□□□□ -0.39
CLK3-216ENST00000564468 COX6A1P12074 109 aa12.64□□□□□ -0.39
CLK3-216ENST00000564468 RNH1P13489 461 aaKnown RBP12.64□□□□□ -0.39
CLK3-216ENST00000564468 RAB8AP61006 207 aa12.64□□□□□ -0.39
CLK3-216ENST00000564468 HYAL2Q12891 473 aa12.64□□□□□ -0.39
CLK3-216ENST00000564468 RAPSNQ13702 412 aa12.64□□□□□ -0.39
CLK3-216ENST00000564468 SLC29A2Q14542 456 aa12.64□□□□□ -0.39
CLK3-216ENST00000564468 PCBP2Q15366 365 aaKnown RBP eCLIP12.64□□□□□ -0.39
CLK3-216ENST00000564468 FAM153CQ494X1 144 aa12.64□□□□□ -0.39
CLK3-216ENST00000564468 LIPJQ5W064 366 aa12.64□□□□□ -0.39
CLK3-216ENST00000564468 MED27Q6P2C8 311 aa12.64□□□□□ -0.39
CLK3-216ENST00000564468 TRIM40Q6P9F5 258 aa12.64□□□□□ -0.39
CLK3-216ENST00000564468 IGFL3Q6UXB1 125 aa12.64□□□□□ -0.39
CLK3-216ENST00000564468 TIFABQ6ZNK6 161 aa12.64□□□□□ -0.39
CLK3-216ENST00000564468 PLD6Q8N2A8 252 aaKnown RBP12.64□□□□□ -0.39
CLK3-216ENST00000564468 TEX9Q8N6V9 391 aa12.64□□□□□ -0.39
CLK3-216ENST00000564468 OR2L5Q8NG80 312 aa12.64□□□□□ -0.39
CLK3-216ENST00000564468 THOC3Q96J01 351 aaKnown RBP12.64□□□□□ -0.39
CLK3-216ENST00000564468 MRPL57Q9BQC6 102 aaKnown RBP12.64□□□□□ -0.39
CLK3-216ENST00000564468 TXLNGYQ9BZA5 131 aa12.64□□□□□ -0.39
CLK3-216ENST00000564468 ROGDIQ9GZN7 287 aa12.64□□□□□ -0.39
CLK3-216ENST00000564468 REXO4Q9GZR2 422 aaKnown RBP12.64□□□□□ -0.39
CLK3-216ENST00000564468 ZNF700Q9H0M5 742 aa12.64□□□□□ -0.39
CLK3-216ENST00000564468 EPS8L2Q9H6S3 715 aa12.64□□□□□ -0.39
CLK3-216ENST00000564468 PPCSQ9HAB8 311 aa12.64□□□□□ -0.39
CLK3-216ENST00000564468 ZNF160Q9HCG1 818 aa12.64□□□□□ -0.39
CLK3-216ENST00000564468 ZNF490Q9ULM2 529 aaPredicted RBP12.64□□□□□ -0.39
CLK3-216ENST00000564468 CPAMD8Q8IZJ3 1885 aa12.63□□□□□ -0.39
CLK3-216ENST00000564468 MAGEB17A8MXT2 336 aa12.63□□□□□ -0.39
CLK3-216ENST00000564468 ERI3O43414 337 aaKnown RBP12.63□□□□□ -0.39
CLK3-216ENST00000564468 B3GALT2O43825 422 aa12.63□□□□□ -0.39
CLK3-216ENST00000564468 ZNF500O60304 480 aaPredicted RBP12.63□□□□□ -0.39
CLK3-216ENST00000564468 UGDHO60701 494 aa12.63□□□□□ -0.39
CLK3-216ENST00000564468 JRKO75564 520 aa12.63□□□□□ -0.39
CLK3-216ENST00000564468 SERPINA7P05543 415 aa12.63□□□□□ -0.39
CLK3-216ENST00000564468 UQCRHP07919 91 aa12.63□□□□□ -0.39
CLK3-216ENST00000564468 FHP07954 510 aa12.63□□□□□ -0.39
CLK3-216ENST00000564468 EPORP19235 508 aa12.63□□□□□ -0.39
CLK3-216ENST00000564468 SNRPNP63162 240 aaKnown RBP12.63□□□□□ -0.39
CLK3-216ENST00000564468 BTN3A2P78410 334 aa12.63□□□□□ -0.39
CLK3-216ENST00000564468 EEF1A2Q05639 463 aaKnown RBP12.63□□□□□ -0.39
CLK3-216ENST00000564468 RCN2Q14257 317 aa12.63□□□□□ -0.39
CLK3-216ENST00000564468 ADPRMQ3LIE5 342 aa12.63□□□□□ -0.39
CLK3-216ENST00000564468 GRHL2Q6ISB3 625 aa12.63□□□□□ -0.39
CLK3-216ENST00000564468 JMJD6Q6NYC1 403 aaPredicted RBP12.63□□□□□ -0.39
CLK3-216ENST00000564468 CHSY3Q70JA7 882 aa12.63□□□□□ -0.39
CLK3-216ENST00000564468 CPEB2Q7Z5Q1 589 aaKnown RBP12.63□□□□□ -0.39
CLK3-216ENST00000564468 LAS2Q8IYD9 372 aa12.63□□□□□ -0.39
CLK3-216ENST00000564468 LRRN4CLQ8ND94 238 aa12.63□□□□□ -0.39
CLK3-216ENST00000564468 ARMC2Q8NEN0 867 aa12.63□□□□□ -0.39
CLK3-216ENST00000564468 OR5T3Q8NGG3 340 aa12.63□□□□□ -0.39
CLK3-216ENST00000564468 ACMSDQ8TDX5 336 aa12.63□□□□□ -0.39
CLK3-216ENST00000564468 ADAMTS18Q8TE60 1221 aa12.63□□□□□ -0.39
CLK3-216ENST00000564468 PNPLA2Q96AD5 504 aa12.63□□□□□ -0.39
CLK3-216ENST00000564468 REPS1Q96D71 796 aa12.63□□□□□ -0.39
CLK3-216ENST00000564468 MS4A6EQ96DS6 147 aa12.63□□□□□ -0.39
CLK3-216ENST00000564468 LMF1Q96S06 567 aa12.63□□□□□ -0.39
CLK3-216ENST00000564468 CENPKQ9BS16 269 aa12.63□□□□□ -0.39
CLK3-216ENST00000564468 EPN3Q9H201 632 aa12.63□□□□□ -0.39
CLK3-216ENST00000564468 MRPL46Q9H2W6 279 aaKnown RBP12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms