RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 SRFBP1Q8NEF9 429 aaKnown RBP12.65□□□□□ -0.38
CLK3-213ENST00000563842 TBC1D20Q96BZ9 403 aa12.65□□□□□ -0.38
CLK3-213ENST00000563842 C8orf44Q96CB5 159 aa12.65□□□□□ -0.38
CLK3-213ENST00000563842 PEX11GQ96HA9 241 aa12.65□□□□□ -0.38
CLK3-213ENST00000563842 SMIM10Q96HG1 83 aa12.65□□□□□ -0.38
CLK3-213ENST00000563842 AGAP4Q96P64 663 aa12.65□□□□□ -0.38
CLK3-213ENST00000563842 GPR78Q96P69 363 aa12.65□□□□□ -0.38
CLK3-213ENST00000563842 TUBB6Q9BUF5 446 aa12.65□□□□□ -0.38
CLK3-213ENST00000563842 NPLQ9BXD5 320 aaPredicted RBP12.65□□□□□ -0.38
CLK3-213ENST00000563842 VN1R1Q9GZP7 353 aa12.65□□□□□ -0.38
CLK3-213ENST00000563842 RHBGQ9H310 441 aa12.65□□□□□ -0.38
CLK3-213ENST00000563842 ZNF552Q9H707 407 aaPredicted RBP12.65□□□□□ -0.38
CLK3-213ENST00000563842 CPSF2Q9P2I0 782 aaKnown RBP12.65□□□□□ -0.38
CLK3-213ENST00000563842 ADGRE2Q9UHX3 823 aa12.65□□□□□ -0.38
CLK3-213ENST00000563842 NBASA2RRP1 2371 aa12.65□□□□□ -0.38
CLK3-213ENST00000563842 IGHV1-45A0A0A0MS14 117 aa12.64□□□□□ -0.39
CLK3-213ENST00000563842 LRIT2A6NDA9 550 aa12.64□□□□□ -0.39
CLK3-213ENST00000563842 ZNF860A6NHJ4 632 aa12.64□□□□□ -0.39
CLK3-213ENST00000563842 CHST10O43529 356 aa12.64□□□□□ -0.39
CLK3-213ENST00000563842 SMIM24O75264 130 aa12.64□□□□□ -0.39
CLK3-213ENST00000563842 WFS1O76024 890 aa12.64□□□□□ -0.39
CLK3-213ENST00000563842 FAM153BP0C7A2 387 aa12.64□□□□□ -0.39
CLK3-213ENST00000563842 COX6A1P12074 109 aa12.64□□□□□ -0.39
CLK3-213ENST00000563842 RNH1P13489 461 aaKnown RBP12.64□□□□□ -0.39
CLK3-213ENST00000563842 RAB8AP61006 207 aa12.64□□□□□ -0.39
CLK3-213ENST00000563842 HYAL2Q12891 473 aa12.64□□□□□ -0.39
CLK3-213ENST00000563842 RAPSNQ13702 412 aa12.64□□□□□ -0.39
CLK3-213ENST00000563842 SLC29A2Q14542 456 aa12.64□□□□□ -0.39
CLK3-213ENST00000563842 PCBP2Q15366 365 aaKnown RBP eCLIP12.64□□□□□ -0.39
CLK3-213ENST00000563842 FAM153CQ494X1 144 aa12.64□□□□□ -0.39
CLK3-213ENST00000563842 LIPJQ5W064 366 aa12.64□□□□□ -0.39
CLK3-213ENST00000563842 MED27Q6P2C8 311 aa12.64□□□□□ -0.39
CLK3-213ENST00000563842 TRIM40Q6P9F5 258 aa12.64□□□□□ -0.39
CLK3-213ENST00000563842 IGFL3Q6UXB1 125 aa12.64□□□□□ -0.39
CLK3-213ENST00000563842 TIFABQ6ZNK6 161 aa12.64□□□□□ -0.39
CLK3-213ENST00000563842 PLD6Q8N2A8 252 aaKnown RBP12.64□□□□□ -0.39
CLK3-213ENST00000563842 TEX9Q8N6V9 391 aa12.64□□□□□ -0.39
CLK3-213ENST00000563842 OR2L5Q8NG80 312 aa12.64□□□□□ -0.39
CLK3-213ENST00000563842 THOC3Q96J01 351 aaKnown RBP12.64□□□□□ -0.39
CLK3-213ENST00000563842 MRPL57Q9BQC6 102 aaKnown RBP12.64□□□□□ -0.39
CLK3-213ENST00000563842 TXLNGYQ9BZA5 131 aa12.64□□□□□ -0.39
CLK3-213ENST00000563842 ROGDIQ9GZN7 287 aa12.64□□□□□ -0.39
CLK3-213ENST00000563842 REXO4Q9GZR2 422 aaKnown RBP12.64□□□□□ -0.39
CLK3-213ENST00000563842 ZNF700Q9H0M5 742 aa12.64□□□□□ -0.39
CLK3-213ENST00000563842 EPS8L2Q9H6S3 715 aa12.64□□□□□ -0.39
CLK3-213ENST00000563842 PPCSQ9HAB8 311 aa12.64□□□□□ -0.39
CLK3-213ENST00000563842 ZNF160Q9HCG1 818 aa12.64□□□□□ -0.39
CLK3-213ENST00000563842 ZNF490Q9ULM2 529 aaPredicted RBP12.64□□□□□ -0.39
CLK3-213ENST00000563842 CPAMD8Q8IZJ3 1885 aa12.63□□□□□ -0.39
CLK3-213ENST00000563842 MAGEB17A8MXT2 336 aa12.63□□□□□ -0.39
CLK3-213ENST00000563842 ERI3O43414 337 aaKnown RBP12.63□□□□□ -0.39
CLK3-213ENST00000563842 B3GALT2O43825 422 aa12.63□□□□□ -0.39
CLK3-213ENST00000563842 ZNF500O60304 480 aaPredicted RBP12.63□□□□□ -0.39
CLK3-213ENST00000563842 UGDHO60701 494 aa12.63□□□□□ -0.39
CLK3-213ENST00000563842 JRKO75564 520 aa12.63□□□□□ -0.39
CLK3-213ENST00000563842 SERPINA7P05543 415 aa12.63□□□□□ -0.39
CLK3-213ENST00000563842 UQCRHP07919 91 aa12.63□□□□□ -0.39
CLK3-213ENST00000563842 FHP07954 510 aa12.63□□□□□ -0.39
CLK3-213ENST00000563842 EPORP19235 508 aa12.63□□□□□ -0.39
CLK3-213ENST00000563842 SNRPNP63162 240 aaKnown RBP12.63□□□□□ -0.39
CLK3-213ENST00000563842 BTN3A2P78410 334 aa12.63□□□□□ -0.39
CLK3-213ENST00000563842 TLE1Q04724 770 aa12.63□□□□□ -0.39
CLK3-213ENST00000563842 EEF1A2Q05639 463 aaKnown RBP12.63□□□□□ -0.39
CLK3-213ENST00000563842 RCN2Q14257 317 aa12.63□□□□□ -0.39
CLK3-213ENST00000563842 ADPRMQ3LIE5 342 aa12.63□□□□□ -0.39
CLK3-213ENST00000563842 GRHL2Q6ISB3 625 aa12.63□□□□□ -0.39
CLK3-213ENST00000563842 JMJD6Q6NYC1 403 aaPredicted RBP12.63□□□□□ -0.39
CLK3-213ENST00000563842 CHSY3Q70JA7 882 aa12.63□□□□□ -0.39
CLK3-213ENST00000563842 CPEB2Q7Z5Q1 589 aaKnown RBP12.63□□□□□ -0.39
CLK3-213ENST00000563842 LAS2Q8IYD9 372 aa12.63□□□□□ -0.39
CLK3-213ENST00000563842 LRRN4CLQ8ND94 238 aa12.63□□□□□ -0.39
CLK3-213ENST00000563842 ARMC2Q8NEN0 867 aa12.63□□□□□ -0.39
CLK3-213ENST00000563842 OR5T3Q8NGG3 340 aa12.63□□□□□ -0.39
CLK3-213ENST00000563842 ACMSDQ8TDX5 336 aa12.63□□□□□ -0.39
CLK3-213ENST00000563842 ADAMTS18Q8TE60 1221 aa12.63□□□□□ -0.39
CLK3-213ENST00000563842 PNPLA2Q96AD5 504 aa12.63□□□□□ -0.39
CLK3-213ENST00000563842 REPS1Q96D71 796 aa12.63□□□□□ -0.39
CLK3-213ENST00000563842 MS4A6EQ96DS6 147 aa12.63□□□□□ -0.39
CLK3-213ENST00000563842 LMF1Q96S06 567 aa12.63□□□□□ -0.39
CLK3-213ENST00000563842 CENPKQ9BS16 269 aa12.63□□□□□ -0.39
CLK3-213ENST00000563842 EPN3Q9H201 632 aa12.63□□□□□ -0.39
CLK3-213ENST00000563842 MRPL46Q9H2W6 279 aaKnown RBP12.63□□□□□ -0.39
CLK3-213ENST00000563842 KLHL31Q9H511 634 aa12.63□□□□□ -0.39
CLK3-213ENST00000563842 COPS7BQ9H9Q2 264 aaPredicted RBP12.63□□□□□ -0.39
CLK3-213ENST00000563842 PSMC3IPQ9P2W1 217 aaPredicted RBP12.63□□□□□ -0.39
CLK3-213ENST00000563842 ASB1Q9Y576 335 aa12.63□□□□□ -0.39
CLK3-213ENST00000563842 PCDHGA11Q9Y5H2 935 aa12.63□□□□□ -0.39
CLK3-213ENST00000563842 SYNDIG1LA6NDD5 238 aa12.62□□□□□ -0.39
CLK3-213ENST00000563842 STX16-NPEPL1H3BU86 382 aa12.62□□□□□ -0.39
CLK3-213ENST00000563842 STX16O14662 325 aa12.62□□□□□ -0.39
CLK3-213ENST00000563842 PRAMEF4O60810 478 aa12.62□□□□□ -0.39
CLK3-213ENST00000563842 PRR35P0CG20 571 aa12.62□□□□□ -0.39
CLK3-213ENST00000563842 CD22P20273 847 aa12.62□□□□□ -0.39
CLK3-213ENST00000563842 PHEXP78562 749 aa12.62□□□□□ -0.39
CLK3-213ENST00000563842 ACTN3Q08043 901 aaPredicted RBP12.62□□□□□ -0.39
CLK3-213ENST00000563842 GTF2H2Q13888 395 aa12.62□□□□□ -0.39
CLK3-213ENST00000563842 PCOLCEQ15113 449 aa12.62□□□□□ -0.39
CLK3-213ENST00000563842 NSDHLQ15738 373 aa12.62□□□□□ -0.39
CLK3-213ENST00000563842 TMEM35AQ53FP2 167 aa12.62□□□□□ -0.39
CLK3-213ENST00000563842 CRB2Q5IJ48 1285 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 89.1 ms