RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 CD163Q86VB7 1156 aa13.34□□□□□ -0.27
CPSF1-201ENST00000526271 SULF2Q8IWU5 870 aa13.34□□□□□ -0.27
CPSF1-201ENST00000526271 SLC5A8Q8N695 610 aa13.34□□□□□ -0.27
CPSF1-201ENST00000526271 TMEM52Q8NDY8 209 aa13.34□□□□□ -0.27
CPSF1-201ENST00000526271 OR52N2Q8NGI0 321 aa13.34□□□□□ -0.27
CPSF1-201ENST00000526271 OR56A3Q8NH54 315 aa13.34□□□□□ -0.27
CPSF1-201ENST00000526271 UTP15Q8TED0 518 aaKnown RBP13.34□□□□□ -0.27
CPSF1-201ENST00000526271 TBC1D20Q96BZ9 403 aa13.34□□□□□ -0.27
CPSF1-201ENST00000526271 SMIM10Q96HG1 83 aa13.34□□□□□ -0.27
CPSF1-201ENST00000526271 C16orf45Q96MC5 204 aaPredicted RBP13.34□□□□□ -0.27
CPSF1-201ENST00000526271 TNFRSF10DQ9UBN6 386 aa13.34□□□□□ -0.27
CPSF1-201ENST00000526271 PPT2Q9UMR5 302 aa13.34□□□□□ -0.27
CPSF1-201ENST00000526271 ABCA4P78363 2273 aa13.33□□□□□ -0.28
CPSF1-201ENST00000526271 A0A0G2JMM0 328 aa13.33□□□□□ -0.28
CPSF1-201ENST00000526271 A0A1W2PPB8 328 aa13.33□□□□□ -0.28
CPSF1-201ENST00000526271 A0A1W2PRS3 328 aa13.33□□□□□ -0.28
CPSF1-201ENST00000526271 TCRBV16S1A1N1A0A5B0 115 aa13.33□□□□□ -0.28
CPSF1-201ENST00000526271 SAGE2PA6NJ88 616 aa13.33□□□□□ -0.28
CPSF1-201ENST00000526271 A8MUA0 341 aa13.33□□□□□ -0.28
CPSF1-201ENST00000526271 KIR3DP1A8MWS1 328 aa13.33□□□□□ -0.28
CPSF1-201ENST00000526271 HS6ST1O60243 411 aa13.33□□□□□ -0.28
CPSF1-201ENST00000526271 ZNF500O60304 480 aaPredicted RBP13.33□□□□□ -0.28
CPSF1-201ENST00000526271 DIAPH2O60879 1101 aa13.33□□□□□ -0.28
CPSF1-201ENST00000526271 BANF1O75531 89 aa13.33□□□□□ -0.28
CPSF1-201ENST00000526271 TBX6O95947 436 aaPredicted RBP13.33□□□□□ -0.28
CPSF1-201ENST00000526271 ZNF888P0CJ79 500 aaPredicted RBP13.33□□□□□ -0.28
CPSF1-201ENST00000526271 TCP1P17987 556 aaKnown RBP13.33□□□□□ -0.28
CPSF1-201ENST00000526271 ALOX12P18054 663 aa13.33□□□□□ -0.28
CPSF1-201ENST00000526271 CAPN3P20807 821 aa13.33□□□□□ -0.28
CPSF1-201ENST00000526271 HRH2P25021 359 aa13.33□□□□□ -0.28
CPSF1-201ENST00000526271 PPP2R1BP30154 601 aa13.33□□□□□ -0.28
CPSF1-201ENST00000526271 SCTRP47872 440 aa13.33□□□□□ -0.28
CPSF1-201ENST00000526271 HLCSP50747 726 aa13.33□□□□□ -0.28
CPSF1-201ENST00000526271 HNRNPFP52597 415 aaKnown RBP13.33□□□□□ -0.28
CPSF1-201ENST00000526271 ACTN3Q08043 901 aaPredicted RBP13.33□□□□□ -0.28
CPSF1-201ENST00000526271 KRTAP21-3Q3LHN1 58 aa13.33□□□□□ -0.28
CPSF1-201ENST00000526271 HSP90AA5PQ58FG0 334 aa13.33□□□□□ -0.28
CPSF1-201ENST00000526271 C4orf22Q6V702 233 aa13.33□□□□□ -0.28
CPSF1-201ENST00000526271 C17orf64Q86WR6 236 aa13.33□□□□□ -0.28
CPSF1-201ENST00000526271 C16orf52Q8NHV5 167 aa13.33□□□□□ -0.28
CPSF1-201ENST00000526271 FAM57AQ8TBR7 257 aa13.33□□□□□ -0.28
CPSF1-201ENST00000526271 ALKBH8Q96BT7 664 aaKnown RBP13.33□□□□□ -0.28
CPSF1-201ENST00000526271 GPAMQ9HCL2 828 aa13.33□□□□□ -0.28
CPSF1-201ENST00000526271 RNF6Q9Y252 685 aa13.33□□□□□ -0.28
CPSF1-201ENST00000526271 SAR1BQ9Y6B6 198 aa13.33□□□□□ -0.28
CPSF1-201ENST00000526271 AP3B1O00203 1094 aa13.32□□□□□ -0.28
CPSF1-201ENST00000526271 EIF3FO00303 357 aaPredicted RBP13.32□□□□□ -0.28
CPSF1-201ENST00000526271 NDUFS4O43181 175 aa13.32□□□□□ -0.28
CPSF1-201ENST00000526271 CEP104O60308 925 aa13.32□□□□□ -0.28
CPSF1-201ENST00000526271 KRT14P02533 472 aa13.32□□□□□ -0.28
CPSF1-201ENST00000526271 MYBL2P10244 700 aa13.32□□□□□ -0.28
CPSF1-201ENST00000526271 TFEBP19484 476 aa13.32□□□□□ -0.28
CPSF1-201ENST00000526271 CYB561P49447 251 aa13.32□□□□□ -0.28
CPSF1-201ENST00000526271 GPR85P60893 370 aa13.32□□□□□ -0.28
CPSF1-201ENST00000526271 CASC4Q6P4E1 433 aa13.32□□□□□ -0.28
CPSF1-201ENST00000526271 QSOX2Q6ZRP7 698 aa13.32□□□□□ -0.28
CPSF1-201ENST00000526271 CEP128Q6ZU80 1094 aa13.32□□□□□ -0.28
CPSF1-201ENST00000526271 GSTA5Q7RTV2 222 aa13.32□□□□□ -0.28
CPSF1-201ENST00000526271 CCDC71Q8IV32 467 aaPredicted RBP13.32□□□□□ -0.28
CPSF1-201ENST00000526271 IGDCC3Q8IVU1 814 aa13.32□□□□□ -0.28
CPSF1-201ENST00000526271 NAT8LQ8N9F0 302 aa13.32□□□□□ -0.28
CPSF1-201ENST00000526271 C2CD4AQ8NCU7 369 aaPredicted RBP13.32□□□□□ -0.28
CPSF1-201ENST00000526271 MCUQ8NE86 351 aa13.32□□□□□ -0.28
CPSF1-201ENST00000526271 NT5CQ8TCD5 201 aa13.32□□□□□ -0.28
CPSF1-201ENST00000526271 MCOLN3Q8TDD5 553 aa13.32□□□□□ -0.28
CPSF1-201ENST00000526271 ACTRT1Q8TDG2 376 aa13.32□□□□□ -0.28
CPSF1-201ENST00000526271 NEIL2Q969S2 332 aa13.32□□□□□ -0.28
CPSF1-201ENST00000526271 PTCHD1Q96NR3 888 aa13.32□□□□□ -0.28
CPSF1-201ENST00000526271 SLC6A16Q9GZN6 736 aa13.32□□□□□ -0.28
CPSF1-201ENST00000526271 PARVBQ9HBI1 364 aa13.32□□□□□ -0.28
CPSF1-201ENST00000526271 C20orf96Q9NUD7 363 aaPredicted RBP13.32□□□□□ -0.28
CPSF1-201ENST00000526271 FREM3P0C091 2139 aa13.31□□□□□ -0.28
CPSF1-201ENST00000526271 TRBC2A0A5B9 178 aa13.31□□□□□ -0.28
CPSF1-201ENST00000526271 SDR42E2A6NKP2 422 aa13.31□□□□□ -0.28
CPSF1-201ENST00000526271 ESPNB1AK53 854 aa13.31□□□□□ -0.28
CPSF1-201ENST00000526271 OR1F1O43749 312 aa13.31□□□□□ -0.28
CPSF1-201ENST00000526271 ZNF354AO60765 605 aaPredicted RBP13.31□□□□□ -0.28
CPSF1-201ENST00000526271 MLNP12872 115 aa13.31□□□□□ -0.28
CPSF1-201ENST00000526271 HOXB4P17483 251 aaPredicted RBP13.31□□□□□ -0.28
CPSF1-201ENST00000526271 RAB8AP61006 207 aa13.31□□□□□ -0.28
CPSF1-201ENST00000526271 PWP1Q13610 501 aa13.31□□□□□ -0.28
CPSF1-201ENST00000526271 HERC3Q15034 1050 aa13.31□□□□□ -0.28
CPSF1-201ENST00000526271 MSS51Q4VC12 460 aa13.31□□□□□ -0.28
CPSF1-201ENST00000526271 XKR6Q5GH73 641 aa13.31□□□□□ -0.28
CPSF1-201ENST00000526271 ARMC3Q5W041 872 aa13.31□□□□□ -0.28
CPSF1-201ENST00000526271 CREG2Q8IUH2 290 aa13.31□□□□□ -0.28
CPSF1-201ENST00000526271 DMRTC2Q8IXT2 367 aaPredicted RBP13.31□□□□□ -0.28
CPSF1-201ENST00000526271 ZFP62Q8NB50 900 aaPredicted RBP13.31□□□□□ -0.28
CPSF1-201ENST00000526271 CREB3L4Q8TEY5 395 aa13.31□□□□□ -0.28
CPSF1-201ENST00000526271 LINGO1Q96FE5 620 aa13.31□□□□□ -0.28
CPSF1-201ENST00000526271 SNF8Q96H20 258 aa13.31□□□□□ -0.28
CPSF1-201ENST00000526271 MS4A14Q96JA4 679 aa13.31□□□□□ -0.28
CPSF1-201ENST00000526271 WDR83Q9BRX9 315 aaKnown RBP13.31□□□□□ -0.28
CPSF1-201ENST00000526271 PCBD2Q9H0N5 130 aa13.31□□□□□ -0.28
CPSF1-201ENST00000526271 LIN28AQ9H9Z2 209 aaKnown RBP13.31□□□□□ -0.28
CPSF1-201ENST00000526271 IARS2Q9NSE4 1012 aaKnown RBP13.31□□□□□ -0.28
CPSF1-201ENST00000526271 IGSF5Q9NSI5 407 aa13.31□□□□□ -0.28
CPSF1-201ENST00000526271 ZFATQ9P243 1243 aa13.31□□□□□ -0.28
CPSF1-201ENST00000526271 VPS9D1Q9Y2B5 631 aa13.31□□□□□ -0.28
CPSF1-201ENST00000526271 LIPGQ9Y5X9 500 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms