RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 SLC6A13Q9NSD5 602 aa9.75□□□□□ -0.85
MCF2-209ENST00000520602 TRPM7Q96QT4 1865 aa9.75□□□□□ -0.85
MCF2-209ENST00000520602 C9P02748 559 aa9.75□□□□□ -0.85
MCF2-209ENST00000520602 AGXTP21549 392 aa9.75□□□□□ -0.85
MCF2-209ENST00000520602 SLC6A12P48065 614 aa9.75□□□□□ -0.85
MCF2-209ENST00000520602 DCDC1P59894 354 aa9.75□□□□□ -0.85
MCF2-209ENST00000520602 SLC9A5Q14940 896 aa9.75□□□□□ -0.85
MCF2-209ENST00000520602 SYT16Q17RD7 645 aa9.75□□□□□ -0.85
MCF2-209ENST00000520602 TRIM16LQ309B1 348 aa9.75□□□□□ -0.85
MCF2-209ENST00000520602 ZNF773Q6PK81 442 aa9.75□□□□□ -0.85
MCF2-209ENST00000520602 VN1R2Q8NFZ6 395 aa9.75□□□□□ -0.85
MCF2-209ENST00000520602 NKX2-4Q9H2Z4 354 aa9.75□□□□□ -0.85
MCF2-209ENST00000520602 EPB41L1Q9H4G0 881 aa9.75□□□□□ -0.85
MCF2-209ENST00000520602 LTB4R2Q9NPC1 389 aa9.75□□□□□ -0.85
MCF2-209ENST00000520602 NDRG2Q9UN36 371 aaKnown RBP9.75□□□□□ -0.85
MCF2-209ENST00000520602 ABCG2Q9UNQ0 655 aa9.75□□□□□ -0.85
MCF2-209ENST00000520602 ZNF780BQ9Y6R6 833 aa9.75□□□□□ -0.85
MCF2-209ENST00000520602 COLEC10Q9Y6Z7 277 aa9.75□□□□□ -0.85
MCF2-209ENST00000520602 NDUFS2O75306 463 aa9.75□□□□□ -0.85
MCF2-209ENST00000520602 PSIP1O75475 530 aaKnown RBP9.75□□□□□ -0.85
MCF2-209ENST00000520602 NADKO95544 446 aaPredicted RBP9.75□□□□□ -0.85
MCF2-209ENST00000520602 C7P10643 843 aa9.75□□□□□ -0.85
MCF2-209ENST00000520602 DBTP11182 482 aaKnown RBP9.75□□□□□ -0.85
MCF2-209ENST00000520602 ZNF182P17025 639 aaPredicted RBP9.75□□□□□ -0.85
MCF2-209ENST00000520602 CMPK1P30085 196 aa9.75□□□□□ -0.85
MCF2-209ENST00000520602 FEN1P39748 380 aaKnown RBP9.75□□□□□ -0.85
MCF2-209ENST00000520602 LSAMPQ13449 338 aa9.75□□□□□ -0.85
MCF2-209ENST00000520602 MYBPC3Q14896 1274 aa9.75□□□□□ -0.85
MCF2-209ENST00000520602 RGNQ15493 299 aa9.75□□□□□ -0.85
MCF2-209ENST00000520602 MED22Q15528 200 aa9.75□□□□□ -0.85
MCF2-209ENST00000520602 GGTA1PQ4G0N0 100 aa9.75□□□□□ -0.85
MCF2-209ENST00000520602 RBM48Q5RL73 367 aaKnown RBP9.75□□□□□ -0.85
MCF2-209ENST00000520602 SLCO4C1Q6ZQN7 724 aa9.75□□□□□ -0.85
MCF2-209ENST00000520602 GPR149Q86SP6 731 aa9.75□□□□□ -0.85
MCF2-209ENST00000520602 PHOSPHO2Q8TCD6 241 aa9.75□□□□□ -0.85
MCF2-209ENST00000520602 SLC9A6Q92581 669 aa9.75□□□□□ -0.85
MCF2-209ENST00000520602 SRMSQ9H3Y6 488 aa9.75□□□□□ -0.85
MCF2-209ENST00000520602 SPATA7Q9P0W8 599 aa9.75□□□□□ -0.85
MCF2-209ENST00000520602 TMPRSS11EQ9UL52 423 aa9.75□□□□□ -0.85
MCF2-209ENST00000520602 SLC9A8Q9Y2E8 581 aa9.75□□□□□ -0.85
MCF2-209ENST00000520602 PCDHGA8Q9Y5G5 932 aa9.75□□□□□ -0.85
MCF2-209ENST00000520602 DOCK6Q96HP0 2047 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 GREB1Q4ZG55 1949 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 PDE9AO76083 593 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 CDKN3Q16667 212 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 PNCKQ6P2M8 343 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 GALNT18Q6P9A2 607 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 BHLHB9Q6PI77 547 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 TMIEQ8NEW7 156 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 YTHDF1Q9BYJ9 559 aaKnown RBP9.74□□□□□ -0.85
MCF2-209ENST00000520602 EPS8L2Q9H6S3 715 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 PLGRKTQ9HBL7 147 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 PRSS16Q9NQE7 514 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 DMRT3Q9NQL9 472 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 H2AFY2Q9P0M6 372 aaPredicted RBP9.74□□□□□ -0.85
MCF2-209ENST00000520602 HEMK1Q9Y5R4 338 aaPredicted RBP9.74□□□□□ -0.85
MCF2-209ENST00000520602 IRAK3Q9Y616 596 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 CNTRLQ7Z7A1 2325 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 CASP8AP2Q9UKL3 1982 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 SLC5A10A0PJK1 596 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 CAPN5O15484 640 aaPredicted RBP9.74□□□□□ -0.85
MCF2-209ENST00000520602 NPPBP16860 134 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 HSD17B2P37059 387 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 CCT3P49368 545 aaKnown RBP9.74□□□□□ -0.85
MCF2-209ENST00000520602 HBA1P69905 142 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 PHC1P78364 1004 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 CDK3Q00526 305 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 RGS1Q08116 209 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 PERM1Q5SV97 790 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 SPRED1Q7Z699 444 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 SFTPA1Q8IWL2 248 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 DEPDC4Q8N2C3 294 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 OR2L2Q8NH16 312 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 HMGB4Q8WW32 186 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 ZHX1-C8orf76Q96EF9 292 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 IL4I1Q96RQ9 567 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 COPS4Q9BT78 406 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 DOHHQ9BU89 302 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 TIMMDC1Q9NPL8 285 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 C11orf16Q9NQ32 467 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 CUEDC1Q9NWM3 386 aaPredicted RBP9.74□□□□□ -0.85
MCF2-209ENST00000520602 NYNRINQ9P2P1 1898 aaKnown RBP9.74□□□□□ -0.85
MCF2-209ENST00000520602 A0A0J9YVX5 310 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 LINC00854A0A1B0GVQ3 168 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 H0YIV9 168 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 ABCB7O75027 752 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 CCNB2O95067 398 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 BMP10O95393 424 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 VIPP01282 170 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 ALPLP05186 524 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 TLX1P31314 330 aaPredicted RBP9.74□□□□□ -0.85
MCF2-209ENST00000520602 HLCSP50747 726 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 RAPSNQ13702 412 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 TECPR1Q7Z6L1 1165 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 SLCO6A1Q86UG4 719 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 DCP2Q8IU60 420 aaKnown RBP9.74□□□□□ -0.85
MCF2-209ENST00000520602 ARMC8Q8IUR7 673 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 MYDGFQ969H8 173 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 SLC35G5Q96KT7 338 aa9.74□□□□□ -0.85
MCF2-209ENST00000520602 ASB16Q96NS5 453 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms