RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 PUS10Q3MIT2 529 aaKnown RBP10.88□□□□□ -0.67
LIMCH1-217ENST00000512946 NIPAL3Q6P499 406 aa10.88□□□□□ -0.67
LIMCH1-217ENST00000512946 LINC00299Q6ZSB3 139 aa10.88□□□□□ -0.67
LIMCH1-217ENST00000512946 ANKRD46Q86W74 232 aa10.88□□□□□ -0.67
LIMCH1-217ENST00000512946 CLEC10AQ8IUN9 316 aa10.88□□□□□ -0.67
LIMCH1-217ENST00000512946 HS3ST5Q8IZT8 346 aa10.88□□□□□ -0.67
LIMCH1-217ENST00000512946 RAB39BQ96DA2 213 aa10.88□□□□□ -0.67
LIMCH1-217ENST00000512946 FBXL20Q96IG2 436 aa10.88□□□□□ -0.67
LIMCH1-217ENST00000512946 HSH2DQ96JZ2 352 aa10.88□□□□□ -0.67
LIMCH1-217ENST00000512946 IL25Q9H293 177 aa10.88□□□□□ -0.67
LIMCH1-217ENST00000512946 ABI3Q9P2A4 366 aa10.88□□□□□ -0.67
LIMCH1-217ENST00000512946 FBXL3Q9UKT7 428 aa10.88□□□□□ -0.67
LIMCH1-217ENST00000512946 ICKQ9UPZ9 632 aa10.88□□□□□ -0.67
LIMCH1-217ENST00000512946 FBXO7Q9Y3I1 522 aa10.88□□□□□ -0.67
LIMCH1-217ENST00000512946 WDR45Q9Y484 360 aa10.88□□□□□ -0.67
LIMCH1-217ENST00000512946 PRSS51A0A1B0GVH4 220 aa10.88□□□□□ -0.67
LIMCH1-217ENST00000512946 ADAM12O43184 909 aa10.88□□□□□ -0.67
LIMCH1-217ENST00000512946 RETP07949 1114 aa10.88□□□□□ -0.67
LIMCH1-217ENST00000512946 NUDT6P53370 316 aa10.88□□□□□ -0.67
LIMCH1-217ENST00000512946 COTL1Q14019 142 aa10.88□□□□□ -0.67
LIMCH1-217ENST00000512946 TBC1D25Q3MII6 688 aa10.88□□□□□ -0.67
LIMCH1-217ENST00000512946 TMEM236Q5W0B7 351 aa10.88□□□□□ -0.67
LIMCH1-217ENST00000512946 CDCA2Q69YH5 1023 aaPredicted RBP10.88□□□□□ -0.67
LIMCH1-217ENST00000512946 DPY19L2P1Q6NXN4 242 aa10.88□□□□□ -0.67
LIMCH1-217ENST00000512946 SMAP2Q8WU79 429 aaPredicted RBP10.88□□□□□ -0.67
LIMCH1-217ENST00000512946 TBX5Q99593 518 aa10.88□□□□□ -0.67
LIMCH1-217ENST00000512946 TMPRSS4Q9NRS4 437 aa10.88□□□□□ -0.67
LIMCH1-217ENST00000512946 MS4A12Q9NXJ0 267 aa10.88□□□□□ -0.67
LIMCH1-217ENST00000512946 NUDT19A8MXV4 375 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 B4GALT4O60513 344 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 TBL1XO60907 577 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 RNASEH2AO75792 299 aaKnown RBP10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 CELP19835 753 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 BDKRB2P30411 391 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 CCKBRP32239 447 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 MAGEA11P43364 429 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 IL10RBQ08334 325 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 LRRC37A5PQ49AS3 106 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 MOB1BQ7L9L4 216 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 FAM122BQ7Z309 247 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 SMIM15Q7Z3B0 74 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 NIPA2Q8N8Q9 360 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 BORCS8Q96FH0 119 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 GAL3ST1Q99999 423 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 PSD2Q9BQI7 771 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 LUZP4Q9P127 313 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 RAI2Q9Y5P3 530 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 A0A0U1RQJ8 604 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 RPS3AP61247 264 aaKnown RBP10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 ESCO2Q56NI9 601 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 HFE2Q6ZVN8 426 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 ZNF619Q8N2I2 560 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 OR56A3Q8NH54 315 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 SPPL2BQ8TCT7 592 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 MITD1Q8WV92 249 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 NSMAFQ92636 917 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 RBP7Q96R05 134 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 CORO1BQ9BR76 489 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 TCEAL2Q9H3H9 227 aaPredicted RBP10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 ST6GALNAC4Q9H4F1 302 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 TEX10Q9NXF1 929 aaPredicted RBP10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 NLKQ9UBE8 527 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 AP1M2Q9Y6Q5 423 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 AOC2O75106 756 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 ZNF254O75437 659 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 CSF1P09603 554 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 TFPTP0C1Z6 253 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 GRM5P41594 1212 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 ZDHHC24Q6UX98 284 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 LACC1Q8IV20 430 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 SLC15A4Q8N697 577 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 GRIN3AQ8TCU5 1115 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 HCAR2Q8TDS4 363 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 HASPINQ8TF76 798 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 FRZBQ92765 325 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 PTERQ96BW5 349 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 FCRL5Q96RD9 977 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 NIPAL2Q9H841 368 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 POPDC3Q9HBV1 291 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 SDHAF3Q9NRP4 125 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 CENPMQ9NSP4 180 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 ZFR2Q9UPR6 939 aaKnown RBP10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 CAPN14A8MX76 684 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 PSMD9O00233 223 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 PMM2O15305 246 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 TOXO94900 526 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 CTHP32929 405 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 GTF2A2P52657 109 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 SELPLGQ14242 412 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 NOMO2Q5JPE7 1267 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 HIST2H3PS2Q5TEC6 136 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 REEP3Q6NUK4 255 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 XYLT1Q86Y38 959 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 TCEANCQ8N8B7 351 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 BBS10Q8TAM1 723 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 OR51J1Q9H342 316 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 MFSD1Q9H3U5 465 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 SLC32A1Q9H598 525 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 RLIMQ9NVW2 624 aa10.87□□□□□ -0.67
LIMCH1-217ENST00000512946 C14orf119Q9NWQ9 140 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms