RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 ITGAMP11215 1152 aa23.25■■□□□ 1.31
UPF3A-209ENST00000492270 SKP1P63208 163 aa23.25■■□□□ 1.31
UPF3A-209ENST00000492270 CHIT1Q13231 466 aa23.25■■□□□ 1.31
UPF3A-209ENST00000492270 INPP5JQ15735 1006 aaPredicted RBP23.25■■□□□ 1.31
UPF3A-209ENST00000492270 Q6ZS92 163 aa23.25■■□□□ 1.31
UPF3A-209ENST00000492270 CPEB2Q7Z5Q1 589 aaKnown RBP23.25■■□□□ 1.31
UPF3A-209ENST00000492270 CCDC91Q7Z6B0 441 aa23.25■■□□□ 1.31
UPF3A-209ENST00000492270 PLD6Q8N2A8 252 aaKnown RBP23.25■■□□□ 1.31
UPF3A-209ENST00000492270 TTLQ8NG68 377 aa23.25■■□□□ 1.31
UPF3A-209ENST00000492270 RHEBL1Q8TAI7 183 aa23.25■■□□□ 1.31
UPF3A-209ENST00000492270 DCAKDQ8WVC6 231 aa23.25■■□□□ 1.31
UPF3A-209ENST00000492270 TBC1D20Q96BZ9 403 aa23.25■■□□□ 1.31
UPF3A-209ENST00000492270 ZNF358Q9NW07 568 aa23.25■■□□□ 1.31
UPF3A-209ENST00000492270 PTGFRNQ9P2B2 879 aa23.25■■□□□ 1.31
UPF3A-209ENST00000492270 CYC1P08574 325 aa23.24■■□□□ 1.31
UPF3A-209ENST00000492270 MAGEA12P43365 314 aa23.24■■□□□ 1.31
UPF3A-209ENST00000492270 IRF8Q02556 426 aa23.24■■□□□ 1.31
UPF3A-209ENST00000492270 ABRAXAS2Q15018 415 aa23.24■■□□□ 1.31
UPF3A-209ENST00000492270 ACAP2Q15057 778 aa23.24■■□□□ 1.31
UPF3A-209ENST00000492270 NIPAL1Q6NVV3 410 aa23.24■■□□□ 1.31
UPF3A-209ENST00000492270 ISLR2Q6UXK2 745 aa23.24■■□□□ 1.31
UPF3A-209ENST00000492270 CUZD1Q86UP6 607 aa23.24■■□□□ 1.31
UPF3A-209ENST00000492270 IFT20Q8IY31 132 aa23.24■■□□□ 1.31
UPF3A-209ENST00000492270 GAL3ST3Q96A11 431 aa23.24■■□□□ 1.31
UPF3A-209ENST00000492270 MS4A6EQ96DS6 147 aa23.24■■□□□ 1.31
UPF3A-209ENST00000492270 WDR77Q9BQA1 342 aaPredicted RBP23.24■■□□□ 1.31
UPF3A-209ENST00000492270 TUBB6Q9BUF5 446 aa23.24■■□□□ 1.31
UPF3A-209ENST00000492270 EFCAB11Q9BUY7 163 aa23.24■■□□□ 1.31
UPF3A-209ENST00000492270 ILKAPQ9H0C8 392 aaPredicted RBP23.24■■□□□ 1.31
UPF3A-209ENST00000492270 EPS8L2Q9H6S3 715 aa23.24■■□□□ 1.31
UPF3A-209ENST00000492270 OPTCQ9UBM4 332 aa23.24■■□□□ 1.31
UPF3A-209ENST00000492270 C19orf25Q9UFG5 118 aaPredicted RBP23.24■■□□□ 1.31
UPF3A-209ENST00000492270 A0A087WUV0 522 aaPredicted RBP23.23■■□□□ 1.31
UPF3A-209ENST00000492270 LRIT2A6NDA9 550 aa23.23■■□□□ 1.31
UPF3A-209ENST00000492270 ANKDD1BA6NHY2 528 aa23.23■■□□□ 1.31
UPF3A-209ENST00000492270 LRRC14BA6NHZ5 514 aa23.23■■□□□ 1.31
UPF3A-209ENST00000492270 K7EPI3 171 aa23.23■■□□□ 1.31
UPF3A-209ENST00000492270 ERI3O43414 337 aaKnown RBP23.23■■□□□ 1.31
UPF3A-209ENST00000492270 B4GALT2O60909 372 aa23.23■■□□□ 1.31
UPF3A-209ENST00000492270 CLEC3AO75596 197 aa23.23■■□□□ 1.31
UPF3A-209ENST00000492270 IL10P22301 178 aa23.23■■□□□ 1.31
UPF3A-209ENST00000492270 SOX11P35716 441 aa23.23■■□□□ 1.31
UPF3A-209ENST00000492270 MSH2P43246 934 aa23.23■■□□□ 1.31
UPF3A-209ENST00000492270 STXBP1P61764 594 aaKnown RBP23.23■■□□□ 1.31
UPF3A-209ENST00000492270 BTN3A2P78410 334 aa23.23■■□□□ 1.31
UPF3A-209ENST00000492270 MFAP5Q13361 173 aa23.23■■□□□ 1.31
UPF3A-209ENST00000492270 B3GNTL1Q67FW5 361 aaPredicted RBP23.23■■□□□ 1.31
UPF3A-209ENST00000492270 CA13Q8N1Q1 262 aa23.23■■□□□ 1.31
UPF3A-209ENST00000492270 EFCAB3Q8N7B9 438 aa23.23■■□□□ 1.31
UPF3A-209ENST00000492270 PLPP5Q8NEB5 264 aa23.23■■□□□ 1.31
UPF3A-209ENST00000492270 PPP4R1Q8TF05 950 aa23.23■■□□□ 1.31
UPF3A-209ENST00000492270 ISL2Q96A47 359 aa23.23■■□□□ 1.31
UPF3A-209ENST00000492270 CNDP1Q96KN2 507 aa23.23■■□□□ 1.31
UPF3A-209ENST00000492270 PITHD1Q9GZP4 211 aaPredicted RBP23.23■■□□□ 1.31
UPF3A-209ENST00000492270 RHBGQ9H310 441 aa23.23■■□□□ 1.31
UPF3A-209ENST00000492270 IKBKGQ9Y6K9 419 aa23.23■■□□□ 1.31
UPF3A-209ENST00000492270 SYCE1LA8MT33 242 aa23.22■■□□□ 1.31
UPF3A-209ENST00000492270 FAM227AF5H4B4 570 aa23.22■■□□□ 1.31
UPF3A-209ENST00000492270 FAM153BP0C7A2 387 aa23.22■■□□□ 1.31
UPF3A-209ENST00000492270 GFAPP14136 432 aa23.22■■□□□ 1.31
UPF3A-209ENST00000492270 GSTM2P28161 218 aa23.22■■□□□ 1.31
UPF3A-209ENST00000492270 UQCRFS1P47985 274 aa23.22■■□□□ 1.31
UPF3A-209ENST00000492270 SERPINB9P50453 376 aa23.22■■□□□ 1.31
UPF3A-209ENST00000492270 BTG2P78543 158 aa23.22■■□□□ 1.31
UPF3A-209ENST00000492270 E2F2Q14209 437 aa23.22■■□□□ 1.31
UPF3A-209ENST00000492270 SETDB1Q15047 1291 aa23.22■■□□□ 1.31
UPF3A-209ENST00000492270 NSDHLQ15738 373 aa23.22■■□□□ 1.31
UPF3A-209ENST00000492270 PFKFB4Q16877 469 aa23.22■■□□□ 1.31
UPF3A-209ENST00000492270 FAM153CQ494X1 144 aa23.22■■□□□ 1.31
UPF3A-209ENST00000492270 SFT2D3Q587I9 215 aa23.22■■□□□ 1.31
UPF3A-209ENST00000492270 TECRLQ5HYJ1 363 aa23.22■■□□□ 1.31
UPF3A-209ENST00000492270 CRB2Q5IJ48 1285 aa23.22■■□□□ 1.31
UPF3A-209ENST00000492270 RIPOR1Q6ZS17 1223 aa23.22■■□□□ 1.31
UPF3A-209ENST00000492270 GSPT2Q8IYD1 628 aaKnown RBP23.22■■□□□ 1.31
UPF3A-209ENST00000492270 IQCKQ8N0W5 287 aa23.22■■□□□ 1.31
UPF3A-209ENST00000492270 C19orf60Q96EN9 201 aa23.22■■□□□ 1.31
UPF3A-209ENST00000492270 MAP10Q9P2G4 905 aa23.22■■□□□ 1.31
UPF3A-209ENST00000492270 CPSF2Q9P2I0 782 aaKnown RBP23.22■■□□□ 1.31
UPF3A-209ENST00000492270 MAGEB17A8MXT2 336 aa23.21■■□□□ 1.31
UPF3A-209ENST00000492270 TRIM49D1C9J1S8 452 aa23.21■■□□□ 1.31
UPF3A-209ENST00000492270 WFS1O76024 890 aa23.21■■□□□ 1.31
UPF3A-209ENST00000492270 RNH1P13489 461 aaKnown RBP23.21■■□□□ 1.31
UPF3A-209ENST00000492270 JAK1P23458 1154 aa23.21■■□□□ 1.31
UPF3A-209ENST00000492270 PLA2G16P53816 162 aa23.21■■□□□ 1.31
UPF3A-209ENST00000492270 RUNX2Q13950 521 aa23.21■■□□□ 1.31
UPF3A-209ENST00000492270 TBCCQ15814 346 aa23.21■■□□□ 1.31
UPF3A-209ENST00000492270 BTBD16Q32M84 506 aa23.21■■□□□ 1.31
UPF3A-209ENST00000492270 ADPRMQ3LIE5 342 aa23.21■■□□□ 1.31
UPF3A-209ENST00000492270 KLC3Q6P597 504 aa23.21■■□□□ 1.31
UPF3A-209ENST00000492270 TAOK1Q7L7X3 1001 aa23.21■■□□□ 1.31
UPF3A-209ENST00000492270 ATCAYQ86WG3 371 aa23.21■■□□□ 1.31
UPF3A-209ENST00000492270 TEX9Q8N6V9 391 aa23.21■■□□□ 1.31
UPF3A-209ENST00000492270 DNAJB14Q8TBM8 379 aa23.21■■□□□ 1.31
UPF3A-209ENST00000492270 SNRNP40Q96DI7 357 aaKnown RBP23.21■■□□□ 1.31
UPF3A-209ENST00000492270 SEC16BQ96JE7 1060 aa23.21■■□□□ 1.31
UPF3A-209ENST00000492270 FAR2Q96K12 515 aa23.21■■□□□ 1.31
UPF3A-209ENST00000492270 QRFPRQ96P65 431 aa23.21■■□□□ 1.31
UPF3A-209ENST00000492270 PCDHGA10Q9Y5H3 936 aa23.21■■□□□ 1.31
UPF3A-209ENST00000492270 EXOC1LA0A1B0GW35 172 aa23.2■■□□□ 1.3
UPF3A-209ENST00000492270 KLK8O60259 260 aa23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms