RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 PCTPQ9UKL6 214 aa13.96□□□□□ -0.17
USP4-212ENST00000486549 MKL2Q9ULH7 1088 aa13.96□□□□□ -0.17
USP4-212ENST00000486549 HS3ST3B1Q9Y662 390 aa13.96□□□□□ -0.17
USP4-212ENST00000486549 TNRC6AQ8NDV7 1962 aaKnown RBP13.96□□□□□ -0.18
USP4-212ENST00000486549 ZNF462Q96JM2 2506 aa13.95□□□□□ -0.18
USP4-212ENST00000486549 LRIT2A6NDA9 550 aa13.95□□□□□ -0.18
USP4-212ENST00000486549 MKRN2OSH3BPM6 223 aa13.95□□□□□ -0.18
USP4-212ENST00000486549 AGPSO00116 658 aa13.95□□□□□ -0.18
USP4-212ENST00000486549 CHST10O43529 356 aa13.95□□□□□ -0.18
USP4-212ENST00000486549 DNAJB6O75190 326 aa13.95□□□□□ -0.18
USP4-212ENST00000486549 GLRA3O75311 464 aa13.95□□□□□ -0.18
USP4-212ENST00000486549 CDC123O75794 336 aaPredicted RBP13.95□□□□□ -0.18
USP4-212ENST00000486549 BMP10O95393 424 aa13.95□□□□□ -0.18
USP4-212ENST00000486549 NR1D1P20393 614 aa13.95□□□□□ -0.18
USP4-212ENST00000486549 CCNG1P51959 295 aa13.95□□□□□ -0.18
USP4-212ENST00000486549 PLA2G16P53816 162 aa13.95□□□□□ -0.18
USP4-212ENST00000486549 BTN3A2P78410 334 aa13.95□□□□□ -0.18
USP4-212ENST00000486549 EEF1A2Q05639 463 aaKnown RBP13.95□□□□□ -0.18
USP4-212ENST00000486549 RAPSNQ13702 412 aa13.95□□□□□ -0.18
USP4-212ENST00000486549 E2F2Q14209 437 aa13.95□□□□□ -0.18
USP4-212ENST00000486549 DCAF10Q5QP82 559 aa13.95□□□□□ -0.18
USP4-212ENST00000486549 KIRREL2Q6UWL6 708 aa13.95□□□□□ -0.18
USP4-212ENST00000486549 MED25Q71SY5 747 aa13.95□□□□□ -0.18
USP4-212ENST00000486549 C4orf33Q8N1A6 199 aa13.95□□□□□ -0.18
USP4-212ENST00000486549 RNF175Q8N4F7 328 aa13.95□□□□□ -0.18
USP4-212ENST00000486549 TMEM151AQ8N4L1 468 aa13.95□□□□□ -0.18
USP4-212ENST00000486549 MS4A6EQ96DS6 147 aa13.95□□□□□ -0.18
USP4-212ENST00000486549 SEC16BQ96JE7 1060 aa13.95□□□□□ -0.18
USP4-212ENST00000486549 FER1L6-AS2Q96M78 137 aa13.95□□□□□ -0.18
USP4-212ENST00000486549 CDK15Q96Q40 435 aa13.95□□□□□ -0.18
USP4-212ENST00000486549 TGIF2Q9GZN2 237 aa13.95□□□□□ -0.18
USP4-212ENST00000486549 REXO4Q9GZR2 422 aaKnown RBP13.95□□□□□ -0.18
USP4-212ENST00000486549 RHBGQ9H310 441 aa13.95□□□□□ -0.18
USP4-212ENST00000486549 DCDC2Q9UHG0 476 aa13.95□□□□□ -0.18
USP4-212ENST00000486549 RAB21Q9UL25 225 aa13.95□□□□□ -0.18
USP4-212ENST00000486549 PLAAQ9Y263 795 aa13.95□□□□□ -0.18
USP4-212ENST00000486549 RNF11Q9Y3C5 154 aa13.95□□□□□ -0.18
USP4-212ENST00000486549 TLN1Q9Y490 2541 aaKnown RBP13.95□□□□□ -0.18
USP4-212ENST00000486549 OR2W5A6NFC9 320 aa13.94□□□□□ -0.18
USP4-212ENST00000486549 COPEO14579 308 aa13.94□□□□□ -0.18
USP4-212ENST00000486549 OR7A17O14581 309 aa13.94□□□□□ -0.18
USP4-212ENST00000486549 DLX3O60479 287 aa13.94□□□□□ -0.18
USP4-212ENST00000486549 TBX6O95947 436 aaPredicted RBP13.94□□□□□ -0.18
USP4-212ENST00000486549 RPS17P08708 135 aaKnown RBP13.94□□□□□ -0.18
USP4-212ENST00000486549 SMIM10L1P0DMW3 83 aa13.94□□□□□ -0.18
USP4-212ENST00000486549 ACPPP15309 386 aa13.94□□□□□ -0.18
USP4-212ENST00000486549 TSPAN8P19075 237 aa13.94□□□□□ -0.18
USP4-212ENST00000486549 EFNA3P52797 238 aa13.94□□□□□ -0.18
USP4-212ENST00000486549 RASA2Q15283 850 aa13.94□□□□□ -0.18
USP4-212ENST00000486549 CPSF6Q16630 551 aaKnown RBP eCLIP13.94□□□□□ -0.18
USP4-212ENST00000486549 TUBB8Q3ZCM7 444 aa13.94□□□□□ -0.18
USP4-212ENST00000486549 LIPJQ5W064 366 aa13.94□□□□□ -0.18
USP4-212ENST00000486549 NIPAL1Q6NVV3 410 aa13.94□□□□□ -0.18
USP4-212ENST00000486549 METTL2BQ6P1Q9 378 aaKnown RBP13.94□□□□□ -0.18
USP4-212ENST00000486549 TRIM40Q6P9F5 258 aa13.94□□□□□ -0.18
USP4-212ENST00000486549 LAS2Q8IYD9 372 aa13.94□□□□□ -0.18
USP4-212ENST00000486549 RIBC1Q8N443 379 aaPredicted RBP13.94□□□□□ -0.18
USP4-212ENST00000486549 MREGQ8N565 214 aa13.94□□□□□ -0.18
USP4-212ENST00000486549 CLEC1AQ8NC01 280 aa13.94□□□□□ -0.18
USP4-212ENST00000486549 BOD1L1Q8NFC6 3051 aa13.94□□□□□ -0.18
USP4-212ENST00000486549 OR2L5Q8NG80 312 aa13.94□□□□□ -0.18
USP4-212ENST00000486549 OR7G3Q8NG95 312 aa13.94□□□□□ -0.18
USP4-212ENST00000486549 OR52B6Q8NGF0 335 aa13.94□□□□□ -0.18
USP4-212ENST00000486549 PPP4R1Q8TF05 950 aa13.94□□□□□ -0.18
USP4-212ENST00000486549 ZNF473Q8WTR7 871 aaKnown RBP13.94□□□□□ -0.18
USP4-212ENST00000486549 SMIM10Q96HG1 83 aa13.94□□□□□ -0.18
USP4-212ENST00000486549 F2RL3Q96RI0 385 aa13.94□□□□□ -0.18
USP4-212ENST00000486549 SLC25A23Q9BV35 468 aa13.94□□□□□ -0.18
USP4-212ENST00000486549 MS4A8Q9BY19 250 aa13.94□□□□□ -0.18
USP4-212ENST00000486549 VN1R1Q9GZP7 353 aa13.94□□□□□ -0.18
USP4-212ENST00000486549 EMCNQ9ULC0 261 aa13.94□□□□□ -0.18
USP4-212ENST00000486549 TP53TG5Q9Y2B4 290 aa13.94□□□□□ -0.18
USP4-212ENST00000486549 CFAP46Q8IYW2 2715 aa13.94□□□□□ -0.18
USP4-212ENST00000486549 HELZ2Q9BYK8 2649 aaKnown RBP13.93□□□□□ -0.18
USP4-212ENST00000486549 K7EM74 188 aa13.93□□□□□ -0.18
USP4-212ENST00000486549 SAP18O00422 153 aaKnown RBP13.93□□□□□ -0.18
USP4-212ENST00000486549 SUV39H1O43463 412 aa13.93□□□□□ -0.18
USP4-212ENST00000486549 UGDHO60701 494 aa13.93□□□□□ -0.18
USP4-212ENST00000486549 CLDN9O95484 217 aa13.93□□□□□ -0.18
USP4-212ENST00000486549 TGFB1P01137 390 aa13.93□□□□□ -0.18
USP4-212ENST00000486549 KRT4P19013 534 aa13.93□□□□□ -0.18
USP4-212ENST00000486549 ATP5F1P24539 256 aaPredicted RBP13.93□□□□□ -0.18
USP4-212ENST00000486549 HPDP32754 393 aaPredicted RBP13.93□□□□□ -0.18
USP4-212ENST00000486549 CDH13P55290 713 aa13.93□□□□□ -0.18
USP4-212ENST00000486549 PCDH1Q08174 1060 aa13.93□□□□□ -0.18
USP4-212ENST00000486549 LACTB2Q53H82 288 aaPredicted RBP13.93□□□□□ -0.18
USP4-212ENST00000486549 SH2D5Q6ZV89 423 aa13.93□□□□□ -0.18
USP4-212ENST00000486549 CCDC63Q8NA47 563 aa13.93□□□□□ -0.18
USP4-212ENST00000486549 OR11G2Q8NGC1 345 aa13.93□□□□□ -0.18
USP4-212ENST00000486549 HUS1BQ8NHY5 278 aa13.93□□□□□ -0.18
USP4-212ENST00000486549 ZNF483Q8TF39 744 aaPredicted RBP13.93□□□□□ -0.18
USP4-212ENST00000486549 METTL21AQ8WXB1 218 aa13.93□□□□□ -0.18
USP4-212ENST00000486549 NACC2Q96BF6 587 aa13.93□□□□□ -0.18
USP4-212ENST00000486549 VPS50Q96JG6 964 aa13.93□□□□□ -0.18
USP4-212ENST00000486549 TMEM237Q96Q45 408 aa13.93□□□□□ -0.18
USP4-212ENST00000486549 MTERF1Q99551 399 aaKnown RBP13.93□□□□□ -0.18
USP4-212ENST00000486549 OR51B5Q9H339 312 aa13.93□□□□□ -0.18
USP4-212ENST00000486549 C12orf65Q9H3J6 166 aaKnown RBP13.93□□□□□ -0.18
USP4-212ENST00000486549 COPS7BQ9H9Q2 264 aaPredicted RBP13.93□□□□□ -0.18
USP4-212ENST00000486549 ZBTB26Q9HCK0 441 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms