RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 NCF1P14598 390 aaPredicted RBP10.84□□□□□ -0.67
USP4-204ENST00000416417 NR0B1P51843 470 aaKnown RBP10.84□□□□□ -0.67
USP4-204ENST00000416417 ITGA8P53708 1063 aa10.84□□□□□ -0.67
USP4-204ENST00000416417 CASP6P55212 293 aa10.84□□□□□ -0.67
USP4-204ENST00000416417 TAS2R50P59544 299 aa10.84□□□□□ -0.67
USP4-204ENST00000416417 BTN3A2P78410 334 aa10.84□□□□□ -0.67
USP4-204ENST00000416417 NXPE4Q6UWF7 544 aa10.84□□□□□ -0.67
USP4-204ENST00000416417 C16orf47Q6ZP98 133 aaPredicted RBP10.84□□□□□ -0.67
USP4-204ENST00000416417 ABHD13Q7L211 337 aa10.84□□□□□ -0.67
USP4-204ENST00000416417 FGD2Q7Z6J4 655 aa10.84□□□□□ -0.67
USP4-204ENST00000416417 SPPL2CQ8IUH8 684 aa10.84□□□□□ -0.67
USP4-204ENST00000416417 SIAH3Q8IW03 269 aa10.84□□□□□ -0.67
USP4-204ENST00000416417 CA13Q8N1Q1 262 aa10.84□□□□□ -0.67
USP4-204ENST00000416417 SPATA6LQ8N4H0 392 aa10.84□□□□□ -0.67
USP4-204ENST00000416417 NFAM1Q8NET5 270 aaPredicted RBP10.84□□□□□ -0.67
USP4-204ENST00000416417 GABPB2Q8TAK5 448 aaPredicted RBP10.84□□□□□ -0.67
USP4-204ENST00000416417 EGFL8Q99944 293 aa10.84□□□□□ -0.67
USP4-204ENST00000416417 SARGQ9BW04 601 aa10.84□□□□□ -0.67
USP4-204ENST00000416417 SLC6A16Q9GZN6 736 aa10.84□□□□□ -0.67
USP4-204ENST00000416417 KCNF1Q9H3M0 494 aa10.84□□□□□ -0.67
USP4-204ENST00000416417 LIN28AQ9H9Z2 209 aaKnown RBP10.84□□□□□ -0.67
USP4-204ENST00000416417 ZFATQ9P243 1243 aa10.84□□□□□ -0.67
USP4-204ENST00000416417 TEX264Q9Y6I9 313 aa10.84□□□□□ -0.67
USP4-204ENST00000416417 ABCA12Q86UK0 2595 aa10.83□□□□□ -0.68
USP4-204ENST00000416417 ASPDHA6ND91 283 aa10.83□□□□□ -0.68
USP4-204ENST00000416417 SAGE2PA6NJ88 616 aa10.83□□□□□ -0.68
USP4-204ENST00000416417 USP27XA6NNY8 438 aa10.83□□□□□ -0.68
USP4-204ENST00000416417 TGFBR3LH3BV60 316 aa10.83□□□□□ -0.68
USP4-204ENST00000416417 ASNA1O43681 348 aa10.83□□□□□ -0.68
USP4-204ENST00000416417 SMIM10L1P0DMW3 83 aa10.83□□□□□ -0.68
USP4-204ENST00000416417 COX6B1P14854 86 aa10.83□□□□□ -0.68
USP4-204ENST00000416417 IL10P22301 178 aa10.83□□□□□ -0.68
USP4-204ENST00000416417 JAK1P23458 1154 aa10.83□□□□□ -0.68
USP4-204ENST00000416417 PTGER1P34995 402 aa10.83□□□□□ -0.68
USP4-204ENST00000416417 HNRNPFP52597 415 aaKnown RBP10.83□□□□□ -0.68
USP4-204ENST00000416417 TAS2R39P59534 338 aa10.83□□□□□ -0.68
USP4-204ENST00000416417 RUNX2Q13950 521 aa10.83□□□□□ -0.68
USP4-204ENST00000416417 TSNQ15631 228 aaKnown RBP10.83□□□□□ -0.68
USP4-204ENST00000416417 ZNF630Q2M218 657 aaPredicted RBP10.83□□□□□ -0.68
USP4-204ENST00000416417 STEAP4Q687X5 459 aa10.83□□□□□ -0.68
USP4-204ENST00000416417 ADNP2Q6IQ32 1131 aa10.83□□□□□ -0.68
USP4-204ENST00000416417 STRA8Q7Z7C7 330 aa10.83□□□□□ -0.68
USP4-204ENST00000416417 CEP97Q8IW35 865 aa10.83□□□□□ -0.68
USP4-204ENST00000416417 CHERPQ8IWX8 916 aaKnown RBP10.83□□□□□ -0.68
USP4-204ENST00000416417 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP10.83□□□□□ -0.68
USP4-204ENST00000416417 PDIK1LQ8N165 341 aa10.83□□□□□ -0.68
USP4-204ENST00000416417 TBC1D19Q8N5T2 526 aa10.83□□□□□ -0.68
USP4-204ENST00000416417 TMEM178AQ8NBL3 297 aa10.83□□□□□ -0.68
USP4-204ENST00000416417 TMEM52Q8NDY8 209 aa10.83□□□□□ -0.68
USP4-204ENST00000416417 CREB3L4Q8TEY5 395 aa10.83□□□□□ -0.68
USP4-204ENST00000416417 ATL1Q8WXF7 558 aa10.83□□□□□ -0.68
USP4-204ENST00000416417 CCT6BQ92526 530 aa10.83□□□□□ -0.68
USP4-204ENST00000416417 SMIM10Q96HG1 83 aa10.83□□□□□ -0.68
USP4-204ENST00000416417 PHF12Q96QT6 1004 aa10.83□□□□□ -0.68
USP4-204ENST00000416417 AIF1LQ9BQI0 150 aa10.83□□□□□ -0.68
USP4-204ENST00000416417 NAT9Q9BTE0 207 aa10.83□□□□□ -0.68
USP4-204ENST00000416417 FAM129AQ9BZQ8 928 aa10.83□□□□□ -0.68
USP4-204ENST00000416417 PELI2Q9HAT8 420 aa10.83□□□□□ -0.68
USP4-204ENST00000416417 PNO1Q9NRX1 252 aaKnown RBP10.83□□□□□ -0.68
USP4-204ENST00000416417 ZNF835Q9Y2P0 537 aa10.83□□□□□ -0.68
USP4-204ENST00000416417 KLF2Q9Y5W3 355 aaPredicted RBP10.83□□□□□ -0.68
USP4-204ENST00000416417 OTOGQ6ZRI0 2925 aa10.82□□□□□ -0.68
USP4-204ENST00000416417 IGKV3D-11A0A0A0MRZ8 115 aa10.82□□□□□ -0.68
USP4-204ENST00000416417 TRBV11-1A0A0K0K1C0 115 aa10.82□□□□□ -0.68
USP4-204ENST00000416417 FAM95CA0A1B0GW59 222 aa10.82□□□□□ -0.68
USP4-204ENST00000416417 TCRBV16S1A1N1A0A5B0 115 aa10.82□□□□□ -0.68
USP4-204ENST00000416417 PSMD12O00232 456 aaPredicted RBP10.82□□□□□ -0.68
USP4-204ENST00000416417 NME2P1O60361 137 aa10.82□□□□□ -0.68
USP4-204ENST00000416417 MYO1DO94832 1006 aa10.82□□□□□ -0.68
USP4-204ENST00000416417 WDR47O94967 919 aa10.82□□□□□ -0.68
USP4-204ENST00000416417 ENO2P09104 434 aaPredicted RBP10.82□□□□□ -0.68
USP4-204ENST00000416417 RNH1P13489 461 aaKnown RBP10.82□□□□□ -0.68
USP4-204ENST00000416417 ABOP16442 354 aa10.82□□□□□ -0.68
USP4-204ENST00000416417 ZNF37AP17032 561 aaPredicted RBP10.82□□□□□ -0.68
USP4-204ENST00000416417 POU3F2P20265 443 aaPredicted RBP10.82□□□□□ -0.68
USP4-204ENST00000416417 NME2P22392 152 aa10.82□□□□□ -0.68
USP4-204ENST00000416417 HNRNPH1P31943 449 aaKnown RBP10.82□□□□□ -0.68
USP4-204ENST00000416417 AHRP35869 848 aa10.82□□□□□ -0.68
USP4-204ENST00000416417 GMPRP36959 345 aa10.82□□□□□ -0.68
USP4-204ENST00000416417 KIR3DL1P43629 444 aa10.82□□□□□ -0.68
USP4-204ENST00000416417 MLF1P58340 268 aa10.82□□□□□ -0.68
USP4-204ENST00000416417 GPR85P60893 370 aa10.82□□□□□ -0.68
USP4-204ENST00000416417 DR1Q01658 176 aa10.82□□□□□ -0.68
USP4-204ENST00000416417 PDIA2Q13087 525 aaKnown RBP10.82□□□□□ -0.68
USP4-204ENST00000416417 RPTNQ6XPR3 784 aa10.82□□□□□ -0.68
USP4-204ENST00000416417 QSOX2Q6ZRP7 698 aa10.82□□□□□ -0.68
USP4-204ENST00000416417 CLNKQ7Z7G1 428 aa10.82□□□□□ -0.68
USP4-204ENST00000416417 GALNT7Q86SF2 657 aa10.82□□□□□ -0.68
USP4-204ENST00000416417 ZC3HC1Q86WB0 502 aaKnown RBP10.82□□□□□ -0.68
USP4-204ENST00000416417 FAM47BQ8NA70 645 aa10.82□□□□□ -0.68
USP4-204ENST00000416417 FBXO36Q8NEA4 188 aa10.82□□□□□ -0.68
USP4-204ENST00000416417 AGAP11Q8TF27 550 aa10.82□□□□□ -0.68
USP4-204ENST00000416417 ESAMQ96AP7 390 aa10.82□□□□□ -0.68
USP4-204ENST00000416417 PDLIM2Q96JY6 352 aa10.82□□□□□ -0.68
USP4-204ENST00000416417 DEFB126Q9BYW3 111 aa10.82□□□□□ -0.68
USP4-204ENST00000416417 CAB39LQ9H9S4 337 aa10.82□□□□□ -0.68
USP4-204ENST00000416417 PRDM9Q9NQV7 894 aa10.82□□□□□ -0.68
USP4-204ENST00000416417 SMYD2Q9NRG4 433 aa10.82□□□□□ -0.68
USP4-204ENST00000416417 MEMO1Q9Y316 297 aa10.82□□□□□ -0.68
USP4-204ENST00000416417 PCDHGB6Q9Y5F9 930 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms