RNA–Protein interactions for RNA: ENST00000640289.1

GTF3A-209, Transcript of general transcription factor IIIA, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene GTF3A, Length 1,098 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-209ENST00000640289 PDSS2Q86YH6 399 aa12.54□□□□□ -0.4
GTF3A-209ENST00000640289 KDF1Q8NAX2 398 aaPredicted RBP12.54□□□□□ -0.4
GTF3A-209ENST00000640289 OR9A4Q8NGU2 314 aa12.54□□□□□ -0.4
GTF3A-209ENST00000640289 UTP15Q8TED0 518 aaKnown RBP12.54□□□□□ -0.4
GTF3A-209ENST00000640289 MMABQ96EY8 250 aaPredicted RBP12.54□□□□□ -0.4
GTF3A-209ENST00000640289 F2RL3Q96RI0 385 aa12.54□□□□□ -0.4
GTF3A-209ENST00000640289 MS4A8Q9BY19 250 aa12.54□□□□□ -0.4
GTF3A-209ENST00000640289 ACBD3Q9H3P7 528 aa12.54□□□□□ -0.4
GTF3A-209ENST00000640289 FARSBQ9NSD9 589 aaKnown RBP12.54□□□□□ -0.4
GTF3A-209ENST00000640289 NKIRAS1Q9NYS0 192 aa12.54□□□□□ -0.4
GTF3A-209ENST00000640289 TIMM22Q9Y584 194 aa12.54□□□□□ -0.4
GTF3A-209ENST00000640289 MRPS18BQ9Y676 258 aaKnown RBP12.54□□□□□ -0.4
GTF3A-209ENST00000640289 SLC22A7Q9Y694 548 aa12.54□□□□□ -0.4
GTF3A-209ENST00000640289 AKAP13Q12802 2813 aa12.54□□□□□ -0.4
GTF3A-209ENST00000640289 LRIT2A6NDA9 550 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 ZNF860A6NHJ4 632 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 HMGB1P1B2RPK0 211 aaPredicted RBP12.53□□□□□ -0.4
GTF3A-209ENST00000640289 SGK494L7N484 410 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 SAP18O00422 153 aaKnown RBP12.53□□□□□ -0.4
GTF3A-209ENST00000640289 TERTO14746 1132 aaKnown RBP12.53□□□□□ -0.4
GTF3A-209ENST00000640289 BIRC5O15392 142 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 ERI3O43414 337 aaKnown RBP12.53□□□□□ -0.4
GTF3A-209ENST00000640289 NPHS1O60500 1241 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 CNOT3O75175 753 aaKnown RBP12.53□□□□□ -0.4
GTF3A-209ENST00000640289 DNAJB6O75190 326 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 ETHE1O95571 254 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 ESRRBO95718 433 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 PDYNP01213 254 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 CHRNGP07510 517 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 SMIM10L1P0DMW3 83 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 LIFP15018 202 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 ALOX12P18054 663 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 ITPKBP27987 946 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 DLSTP36957 453 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 HTR6P50406 440 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 SLC18A1P54219 525 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 PKNOX1P55347 436 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 FOXL2P58012 376 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 RPS13P62277 151 aaKnown RBP12.53□□□□□ -0.4
GTF3A-209ENST00000640289 MAT1AQ00266 395 aaKnown RBP12.53□□□□□ -0.4
GTF3A-209ENST00000640289 FAM53BQ14153 422 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 CHI3L2Q15782 390 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 SYT16Q17RD7 645 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 ADPRMQ3LIE5 342 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 DEFB134Q4QY38 66 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 ARHGAP40Q5TG30 622 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 FAM69BQ5VUD6 431 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 MLIPQ5VWP3 458 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 FRG2Q64ET8 278 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 CUZD1Q86UP6 607 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 TMEM151BQ8IW70 566 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 SPACA3Q8IXA5 215 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 AFAP1L2Q8N4X5 818 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 OR6Y1Q8NGX8 325 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 PPP1R14CQ8TAE6 165 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 METTL6Q8TCB7 284 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 COL26A1Q96A83 441 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 REPS1Q96D71 796 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 MS4A6EQ96DS6 147 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 SMIM10Q96HG1 83 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 SEC16BQ96JE7 1060 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 CNDP1Q96KN2 507 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 FRG2BQ96QU4 278 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 HBEGFQ99075 208 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 DPH1Q9BZG8 443 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 REXO4Q9GZR2 422 aaKnown RBP12.53□□□□□ -0.4
GTF3A-209ENST00000640289 OR51B5Q9H339 312 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 ANKHQ9HCJ1 492 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 ZNF304Q9HCX3 659 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 DMRT3Q9NQL9 472 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 IFT80Q9P2H3 777 aaPredicted RBP12.53□□□□□ -0.4
GTF3A-209ENST00000640289 IL17BQ9UHF5 180 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 ZMIZ1Q9ULJ6 1067 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 STK38LQ9Y2H1 464 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 NAALAD2Q9Y3Q0 740 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 TSC22D4Q9Y3Q8 395 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 ASPMQ8IZT6 3477 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 HEATR5BQ9P2D3 2071 aa12.53□□□□□ -0.4
GTF3A-209ENST00000640289 URADA6NGE7 173 aa12.52□□□□□ -0.41
GTF3A-209ENST00000640289 RTCAO00442 366 aaKnown RBP12.52□□□□□ -0.41
GTF3A-209ENST00000640289 MANBAO00462 879 aa12.52□□□□□ -0.41
GTF3A-209ENST00000640289 RRP8O43159 456 aaKnown RBP12.52□□□□□ -0.41
GTF3A-209ENST00000640289 ITM2AO43736 263 aa12.52□□□□□ -0.41
GTF3A-209ENST00000640289 GALR3O60755 368 aaPredicted RBP12.52□□□□□ -0.41
GTF3A-209ENST00000640289 RDH16O75452 317 aa12.52□□□□□ -0.41
GTF3A-209ENST00000640289 LYPLA1O75608 230 aaPredicted RBP12.52□□□□□ -0.41
GTF3A-209ENST00000640289 KLHL18O94889 574 aa12.52□□□□□ -0.41
GTF3A-209ENST00000640289 NSA2O95478 260 aaKnown RBP12.52□□□□□ -0.41
GTF3A-209ENST00000640289 WT1P19544 449 aaPredicted RBP12.52□□□□□ -0.41
GTF3A-209ENST00000640289 BGNP21810 368 aa12.52□□□□□ -0.41
GTF3A-209ENST00000640289 FBLP22087 321 aaKnown RBP12.52□□□□□ -0.41
GTF3A-209ENST00000640289 SERPINB3P29508 390 aa12.52□□□□□ -0.41
GTF3A-209ENST00000640289 HMOX2P30519 316 aa12.52□□□□□ -0.41
GTF3A-209ENST00000640289 SERPINB1P30740 379 aa12.52□□□□□ -0.41
GTF3A-209ENST00000640289 PIK3CBP42338 1070 aa12.52□□□□□ -0.41
GTF3A-209ENST00000640289 AVPR1BP47901 424 aa12.52□□□□□ -0.41
GTF3A-209ENST00000640289 PLA2G16P53816 162 aa12.52□□□□□ -0.41
GTF3A-209ENST00000640289 STXBP1P61764 594 aaKnown RBP12.52□□□□□ -0.41
GTF3A-209ENST00000640289 RPS18P62269 152 aaKnown RBP12.52□□□□□ -0.41
GTF3A-209ENST00000640289 OLR1P78380 273 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms