RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 ZNF160Q9HCG1 818 aa18.19■□□□□ 0.5
CLN3-260ENST00000637578 NAALAD2Q9Y3Q0 740 aa18.19■□□□□ 0.5
CLN3-260ENST00000637578 RELNP78509 3460 aa18.19■□□□□ 0.5
CLN3-260ENST00000637578 ASH1LQ9NR48 2969 aaKnown RBP18.18■□□□□ 0.5
CLN3-260ENST00000637578 A0A096LPK6 155 aa18.18■□□□□ 0.5
CLN3-260ENST00000637578 NSG1A0A0A6YYJ2 146 aa18.18■□□□□ 0.5
CLN3-260ENST00000637578 IQANK1A0A1B0GTG1 560 aa18.18■□□□□ 0.5
CLN3-260ENST00000637578 CLEC18AA5D8T8 446 aa18.18■□□□□ 0.5
CLN3-260ENST00000637578 TAPBPO15533 448 aa18.18■□□□□ 0.5
CLN3-260ENST00000637578 JRKO75564 520 aa18.18■□□□□ 0.5
CLN3-260ENST00000637578 KLHL18O94889 574 aa18.18■□□□□ 0.5
CLN3-260ENST00000637578 GNAZP19086 355 aa18.18■□□□□ 0.5
CLN3-260ENST00000637578 IRF9Q00978 393 aa18.18■□□□□ 0.5
CLN3-260ENST00000637578 IFFO1Q0D2I5 559 aa18.18■□□□□ 0.5
CLN3-260ENST00000637578 HYAL2Q12891 473 aa18.18■□□□□ 0.5
CLN3-260ENST00000637578 CRB2Q5IJ48 1285 aa18.18■□□□□ 0.5
CLN3-260ENST00000637578 CLEC18BQ6UXF7 455 aa18.18■□□□□ 0.5
CLN3-260ENST00000637578 SLCO4C1Q6ZQN7 724 aa18.18■□□□□ 0.5
CLN3-260ENST00000637578 GPSM1Q86YR5 675 aa18.18■□□□□ 0.5
CLN3-260ENST00000637578 TCAIMQ8N3R3 496 aa18.18■□□□□ 0.5
CLN3-260ENST00000637578 ZADH2Q8N4Q0 377 aa18.18■□□□□ 0.5
CLN3-260ENST00000637578 CLEC18CQ8NCF0 446 aa18.18■□□□□ 0.5
CLN3-260ENST00000637578 ZCCHC10Q8TBK6 192 aa18.18■□□□□ 0.5
CLN3-260ENST00000637578 MTBPQ96DY7 904 aa18.18■□□□□ 0.5
CLN3-260ENST00000637578 TMEM79Q9BSE2 394 aa18.18■□□□□ 0.5
CLN3-260ENST00000637578 COPG2Q9UBF2 871 aa18.18■□□□□ 0.5
CLN3-260ENST00000637578 ACOT9Q9Y305 439 aa18.18■□□□□ 0.5
CLN3-260ENST00000637578 GALR3O60755 368 aaPredicted RBP18.17■□□□□ 0.5
CLN3-260ENST00000637578 WDR47O94967 919 aa18.17■□□□□ 0.5
CLN3-260ENST00000637578 SMIM10L1P0DMW3 83 aa18.17■□□□□ 0.5
CLN3-260ENST00000637578 IL10P22301 178 aa18.17■□□□□ 0.5
CLN3-260ENST00000637578 XCR1P46094 333 aa18.17■□□□□ 0.5
CLN3-260ENST00000637578 KCNC1P48547 511 aa18.17■□□□□ 0.5
CLN3-260ENST00000637578 DLG1Q12959 904 aa18.17■□□□□ 0.5
CLN3-260ENST00000637578 PCOLCEQ15113 449 aa18.17■□□□□ 0.5
CLN3-260ENST00000637578 INPP5JQ15735 1006 aaPredicted RBP18.17■□□□□ 0.5
CLN3-260ENST00000637578 TMPRSS11BQ86T26 416 aa18.17■□□□□ 0.5
CLN3-260ENST00000637578 TBC1D1Q86TI0 1168 aaPredicted RBP18.17■□□□□ 0.5
CLN3-260ENST00000637578 KBTBD2Q8IY47 623 aa18.17■□□□□ 0.5
CLN3-260ENST00000637578 CENPLQ8N0S6 344 aaPredicted RBP18.17■□□□□ 0.5
CLN3-260ENST00000637578 PDPRQ8NCN5 879 aa18.17■□□□□ 0.5
CLN3-260ENST00000637578 TRPV3Q8NET8 790 aa18.17■□□□□ 0.5
CLN3-260ENST00000637578 CREB3L4Q8TEY5 395 aa18.17■□□□□ 0.5
CLN3-260ENST00000637578 PSMF1Q92530 271 aa18.17■□□□□ 0.5
CLN3-260ENST00000637578 SMIM10Q96HG1 83 aa18.17■□□□□ 0.5
CLN3-260ENST00000637578 IMMP1LQ96LU5 166 aa18.17■□□□□ 0.5
CLN3-260ENST00000637578 LMF1Q96S06 567 aa18.17■□□□□ 0.5
CLN3-260ENST00000637578 SLC6A16Q9GZN6 736 aa18.17■□□□□ 0.5
CLN3-260ENST00000637578 VPS11Q9H270 941 aa18.17■□□□□ 0.5
CLN3-260ENST00000637578 SLAMF7Q9NQ25 335 aa18.17■□□□□ 0.5
CLN3-260ENST00000637578 IGSF5Q9NSI5 407 aa18.17■□□□□ 0.5
CLN3-260ENST00000637578 GPRC5BQ9NZH0 403 aa18.17■□□□□ 0.5
CLN3-260ENST00000637578 HCN3Q9P1Z3 774 aa18.17■□□□□ 0.5
CLN3-260ENST00000637578 PTBP2Q9UKA9 531 aaKnown RBP18.17■□□□□ 0.5
CLN3-260ENST00000637578 A0A087X1B8 175 aa18.17■□□□□ 0.5
CLN3-260ENST00000637578 NCF1BA6NI72 391 aaPredicted RBP18.17■□□□□ 0.5
CLN3-260ENST00000637578 NCF1CA8MVU1 366 aaPredicted RBP18.17■□□□□ 0.5
CLN3-260ENST00000637578 CDH16O75309 829 aa18.17■□□□□ 0.5
CLN3-260ENST00000637578 RDH16O75452 317 aa18.17■□□□□ 0.5
CLN3-260ENST00000637578 PRR35P0CG20 571 aa18.17■□□□□ 0.5
CLN3-260ENST00000637578 C8orf89P0DMQ9 161 aa18.17■□□□□ 0.5
CLN3-260ENST00000637578 C1GALT1C1LP0DN25 315 aa18.17■□□□□ 0.5
CLN3-260ENST00000637578 NCF1P14598 390 aaPredicted RBP18.17■□□□□ 0.5
CLN3-260ENST00000637578 ALOX12P18054 663 aa18.17■□□□□ 0.5
CLN3-260ENST00000637578 VARSP26640 1264 aaKnown RBP18.17■□□□□ 0.5
CLN3-260ENST00000637578 RGS1Q08116 209 aa18.17■□□□□ 0.5
CLN3-260ENST00000637578 RASA2Q15283 850 aa18.17■□□□□ 0.5
CLN3-260ENST00000637578 IRAK1BP1Q5VVH5 260 aa18.17■□□□□ 0.5
CLN3-260ENST00000637578 FAAH2Q6GMR7 532 aa18.17■□□□□ 0.5
CLN3-260ENST00000637578 SULT1C3Q6IMI6 304 aa18.17■□□□□ 0.5
CLN3-260ENST00000637578 NIPAL1Q6NVV3 410 aa18.17■□□□□ 0.5
CLN3-260ENST00000637578 TIFABQ6ZNK6 161 aa18.17■□□□□ 0.5
CLN3-260ENST00000637578 CCDC91Q7Z6B0 441 aa18.17■□□□□ 0.5
CLN3-260ENST00000637578 ISCA2Q86U28 154 aa18.17■□□□□ 0.5
CLN3-260ENST00000637578 GALNT11Q8NCW6 608 aa18.17■□□□□ 0.5
CLN3-260ENST00000637578 PPP4R1Q8TF05 950 aa18.17■□□□□ 0.5
CLN3-260ENST00000637578 MZB1Q8WU39 189 aa18.17■□□□□ 0.5
CLN3-260ENST00000637578 KCTD4Q8WVF5 259 aa18.17■□□□□ 0.5
CLN3-260ENST00000637578 OR1F2PQ96R84 312 aa18.17■□□□□ 0.5
CLN3-260ENST00000637578 CAPS2Q9BXY5 557 aa18.17■□□□□ 0.5
CLN3-260ENST00000637578 RIC8BQ9NVN3 520 aa18.17■□□□□ 0.5
CLN3-260ENST00000637578 LUZP4Q9P127 313 aa18.17■□□□□ 0.5
CLN3-260ENST00000637578 FLNBO75369 2602 aaKnown RBP18.16■□□□□ 0.5
CLN3-260ENST00000637578 TLDC2A0PJX2 215 aa18.16■□□□□ 0.5
CLN3-260ENST00000637578 SERPINA7P05543 415 aa18.16■□□□□ 0.5
CLN3-260ENST00000637578 SERPINA6P08185 405 aa18.16■□□□□ 0.5
CLN3-260ENST00000637578 LTA4HP09960 611 aaKnown RBP18.16■□□□□ 0.5
CLN3-260ENST00000637578 EEF1A2Q05639 463 aaKnown RBP18.16■□□□□ 0.5
CLN3-260ENST00000637578 CDC16Q13042 620 aa18.16■□□□□ 0.5
CLN3-260ENST00000637578 RIPOR1Q6ZS17 1223 aa18.16■□□□□ 0.5
CLN3-260ENST00000637578 ATCAYQ86WG3 371 aa18.16■□□□□ 0.5
CLN3-260ENST00000637578 CYP4X1Q8N118 509 aa18.16■□□□□ 0.5
CLN3-260ENST00000637578 UTP15Q8TED0 518 aaKnown RBP18.16■□□□□ 0.5
CLN3-260ENST00000637578 NXNL1Q96CM4 212 aa18.16■□□□□ 0.5
CLN3-260ENST00000637578 WDR77Q9BQA1 342 aaPredicted RBP18.16■□□□□ 0.5
CLN3-260ENST00000637578 PITHD1Q9GZP4 211 aaPredicted RBP18.16■□□□□ 0.5
CLN3-260ENST00000637578 EHD1Q9H4M9 534 aa18.16■□□□□ 0.5
CLN3-260ENST00000637578 CNOT10Q9H9A5 744 aaKnown RBP18.16■□□□□ 0.5
CLN3-260ENST00000637578 CLK4Q9HAZ1 481 aaKnown RBP18.16■□□□□ 0.5
CLN3-260ENST00000637578 LANCL2Q9NS86 450 aa18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms