RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 PCBP2Q15366 365 aaKnown RBP eCLIP15.26■□□□□ 0.038e-35■■■■□ 19.3
TRIM28-213ENST00000598355 RBBP7Q16576 425 aa15.26■□□□□ 0.03
TRIM28-213ENST00000598355 TSNAXIP1Q2TAA8 658 aa15.26■□□□□ 0.03
TRIM28-213ENST00000598355 TUBB8Q3ZCM7 444 aa15.26■□□□□ 0.03
TRIM28-213ENST00000598355 TMEM205Q6UW68 189 aa15.26■□□□□ 0.03
TRIM28-213ENST00000598355 KRT78Q8N1N4 520 aa15.26■□□□□ 0.03
TRIM28-213ENST00000598355 CLEC1AQ8NC01 280 aa15.26■□□□□ 0.03
TRIM28-213ENST00000598355 OR51Q1Q8NH59 317 aa15.26■□□□□ 0.03
TRIM28-213ENST00000598355 MZB1Q8WU39 189 aa15.26■□□□□ 0.03
TRIM28-213ENST00000598355 MTBPQ96DY7 904 aa15.26■□□□□ 0.03
TRIM28-213ENST00000598355 OR1F2PQ96R84 312 aa15.26■□□□□ 0.03
TRIM28-213ENST00000598355 VPS11Q9H270 941 aa15.26■□□□□ 0.03
TRIM28-213ENST00000598355 RHBGQ9H310 441 aa15.26■□□□□ 0.03
TRIM28-213ENST00000598355 CLK4Q9HAZ1 481 aaKnown RBP15.26■□□□□ 0.03
TRIM28-213ENST00000598355 ZNF71Q9NQZ8 489 aaPredicted RBP15.26■□□□□ 0.03
TRIM28-213ENST00000598355 ZNF358Q9NW07 568 aa15.26■□□□□ 0.03
TRIM28-213ENST00000598355 GPR83Q9NYM4 423 aa15.26■□□□□ 0.03
TRIM28-213ENST00000598355 ANAPC2Q9UJX6 822 aa15.26■□□□□ 0.03
TRIM28-213ENST00000598355 NAALAD2Q9Y3Q0 740 aa15.26■□□□□ 0.03
TRIM28-213ENST00000598355 SGK494L7N484 410 aa15.25■□□□□ 0.03
TRIM28-213ENST00000598355 CCNT2O60583 730 aaKnown RBP15.25■□□□□ 0.03
TRIM28-213ENST00000598355 CLEC3AO75596 197 aa15.25■□□□□ 0.03
TRIM28-213ENST00000598355 HPP00738 406 aa15.25■□□□□ 0.03
TRIM28-213ENST00000598355 ZNF888P0CJ79 500 aaPredicted RBP15.25■□□□□ 0.03
TRIM28-213ENST00000598355 COX6A1P12074 109 aa15.25■□□□□ 0.03
TRIM28-213ENST00000598355 PLA2G2AP14555 144 aa15.25■□□□□ 0.03
TRIM28-213ENST00000598355 ACPPP15309 386 aa15.25■□□□□ 0.03
TRIM28-213ENST00000598355 IL10P22301 178 aa15.25■□□□□ 0.03
TRIM28-213ENST00000598355 XCR1P46094 333 aa15.25■□□□□ 0.03
TRIM28-213ENST00000598355 SKP1P63208 163 aa15.25■□□□□ 0.03
TRIM28-213ENST00000598355 VWA5B1Q5TIE3 1220 aa15.25■□□□□ 0.03
TRIM28-213ENST00000598355 ASB18Q6ZVZ8 466 aa15.25■□□□□ 0.03
TRIM28-213ENST00000598355 ABHD13Q7L211 337 aa15.25■□□□□ 0.03
TRIM28-213ENST00000598355 HPS6Q86YV9 775 aa15.25■□□□□ 0.03
TRIM28-213ENST00000598355 PRSS58Q8IYP2 241 aa15.25■□□□□ 0.03
TRIM28-213ENST00000598355 GALNT16Q8N428 558 aa15.25■□□□□ 0.03
TRIM28-213ENST00000598355 TMEM151AQ8N4L1 468 aa15.25■□□□□ 0.03
TRIM28-213ENST00000598355 SNX31Q8N9S9 440 aa15.25■□□□□ 0.03
TRIM28-213ENST00000598355 GAL3ST3Q96A11 431 aa15.25■□□□□ 0.03
TRIM28-213ENST00000598355 VPS50Q96JG6 964 aa15.25■□□□□ 0.03
TRIM28-213ENST00000598355 VN1R1Q9GZP7 353 aa15.25■□□□□ 0.03
TRIM28-213ENST00000598355 LANCL2Q9NS86 450 aa15.25■□□□□ 0.03
TRIM28-213ENST00000598355 HCN3Q9P1Z3 774 aa15.25■□□□□ 0.03
TRIM28-213ENST00000598355 OPTCQ9UBM4 332 aa15.25■□□□□ 0.03
TRIM28-213ENST00000598355 ZNF490Q9ULM2 529 aaPredicted RBP15.25■□□□□ 0.03
TRIM28-213ENST00000598355 SHANK1Q9Y566 2161 aa15.25■□□□□ 0.03
TRIM28-213ENST00000598355 LRIT2A6NDA9 550 aa15.24■□□□□ 0.03
TRIM28-213ENST00000598355 URADA6NGE7 173 aa15.24■□□□□ 0.03
TRIM28-213ENST00000598355 MASP2O00187 686 aa15.24■□□□□ 0.03
TRIM28-213ENST00000598355 H2AFYO75367 372 aaKnown RBP15.24■□□□□ 0.03
TRIM28-213ENST00000598355 JRKO75564 520 aa15.24■□□□□ 0.03
TRIM28-213ENST00000598355 RBP1P09455 135 aa15.24■□□□□ 0.03
TRIM28-213ENST00000598355 SBK3P0C264 359 aa15.24■□□□□ 0.03
TRIM28-213ENST00000598355 HNRNPH1P31943 449 aaKnown RBP15.24■□□□□ 0.03
TRIM28-213ENST00000598355 PGDP52209 483 aa15.24■□□□□ 0.03
TRIM28-213ENST00000598355 EMP2P54851 167 aa15.24■□□□□ 0.03
TRIM28-213ENST00000598355 CHIT1Q13231 466 aa15.24■□□□□ 0.03
TRIM28-213ENST00000598355 LAPTM5Q13571 262 aa15.24■□□□□ 0.03
TRIM28-213ENST00000598355 RBBP5Q15291 538 aaKnown RBP15.24■□□□□ 0.03
TRIM28-213ENST00000598355 DEFB134Q4QY38 66 aa15.24■□□□□ 0.03
TRIM28-213ENST00000598355 XKR6Q5GH73 641 aa15.24■□□□□ 0.03
TRIM28-213ENST00000598355 ADNP2Q6IQ32 1131 aa15.24■□□□□ 0.03
TRIM28-213ENST00000598355 LCA5Q86VQ0 697 aa15.24■□□□□ 0.03
TRIM28-213ENST00000598355 LAS2Q8IYD9 372 aa15.24■□□□□ 0.03
TRIM28-213ENST00000598355 MS4A6EQ96DS6 147 aa15.24■□□□□ 0.03
TRIM28-213ENST00000598355 KLHL31Q9H511 634 aa15.24■□□□□ 0.03
TRIM28-213ENST00000598355 ZNF552Q9H707 407 aaPredicted RBP15.24■□□□□ 0.03
TRIM28-213ENST00000598355 ATP13A2Q9NQ11 1180 aa15.24■□□□□ 0.03
TRIM28-213ENST00000598355 C5AR2Q9P296 337 aa15.24■□□□□ 0.03
TRIM28-213ENST00000598355 PSMC3IPQ9P2W1 217 aaPredicted RBP15.24■□□□□ 0.03
TRIM28-213ENST00000598355 XPR1Q9UBH6 696 aa15.24■□□□□ 0.03
TRIM28-213ENST00000598355 TMCO1Q9UM00 188 aa15.24■□□□□ 0.03
TRIM28-213ENST00000598355 TSC22D4Q9Y3Q8 395 aa15.24■□□□□ 0.03
TRIM28-213ENST00000598355 ZNF451Q9Y4E5 1061 aa15.24■□□□□ 0.03
TRIM28-213ENST00000598355 IGHV1-45A0A0A0MS14 117 aa15.23■□□□□ 0.03
TRIM28-213ENST00000598355 ZNF860A6NHJ4 632 aa15.23■□□□□ 0.03
TRIM28-213ENST00000598355 STX16-NPEPL1H3BU86 382 aa15.23■□□□□ 0.03
TRIM28-213ENST00000598355 E2F3O00716 465 aa15.23■□□□□ 0.03
TRIM28-213ENST00000598355 STX16O14662 325 aa15.23■□□□□ 0.03
TRIM28-213ENST00000598355 UGDHO60701 494 aa15.23■□□□□ 0.03
TRIM28-213ENST00000598355 ALOX12BO75342 701 aa15.23■□□□□ 0.03
TRIM28-213ENST00000598355 B3GALT4O96024 378 aa15.23■□□□□ 0.03
TRIM28-213ENST00000598355 GFAPP14136 432 aa15.23■□□□□ 0.03
TRIM28-213ENST00000598355 EPB42P16452 691 aa15.23■□□□□ 0.03
TRIM28-213ENST00000598355 STXBP1P61764 594 aaKnown RBP15.23■□□□□ 0.03
TRIM28-213ENST00000598355 RHAGQ02094 409 aa15.23■□□□□ 0.03
TRIM28-213ENST00000598355 IRF8Q02556 426 aa15.23■□□□□ 0.03
TRIM28-213ENST00000598355 Q0VFX4 171 aa15.23■□□□□ 0.03
TRIM28-213ENST00000598355 KLRB1Q12918 225 aa15.23■□□□□ 0.03
TRIM28-213ENST00000598355 PCOLCEQ15113 449 aa15.23■□□□□ 0.03
TRIM28-213ENST00000598355 RASA2Q15283 850 aa15.23■□□□□ 0.03
TRIM28-213ENST00000598355 PFKFB4Q16877 469 aa15.23■□□□□ 0.03
TRIM28-213ENST00000598355 PAGE2BQ5JRK9 111 aa15.23■□□□□ 0.03
TRIM28-213ENST00000598355 TOR1AIP1Q5JTV8 583 aa15.23■□□□□ 0.03
TRIM28-213ENST00000598355 GRHL2Q6ISB3 625 aa15.23■□□□□ 0.03
TRIM28-213ENST00000598355 ZNF605Q86T29 641 aa15.23■□□□□ 0.03
TRIM28-213ENST00000598355 PTRH1Q86Y79 214 aaKnown RBP15.23■□□□□ 0.03
TRIM28-213ENST00000598355 OR5T3Q8NGG3 340 aa15.23■□□□□ 0.03
TRIM28-213ENST00000598355 C8orf44Q96CB5 159 aa15.23■□□□□ 0.03
TRIM28-213ENST00000598355 QRFPRQ96P65 431 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms