RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 PERM1Q5SV97 790 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 PPP2R2DQ66LE6 453 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 TMIGD1Q6UXZ0 262 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 METTL3Q86U44 580 aaKnown RBP5.37□□□□□ -1.55
LIMA1-215ENST00000552823 FAM217AQ8IXS0 508 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 CPA6Q8N4T0 437 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 DPP10Q8N608 796 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 ZNF540Q8NDQ6 660 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 OR5D16Q8NGK9 328 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 CCL4L1Q8NHW4 92 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 SLC5A11Q8WWX8 675 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 ISG20Q96AZ6 181 aaKnown RBP5.37□□□□□ -1.55
LIMA1-215ENST00000552823 IL4I1Q96RQ9 567 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 SH3GL3Q99963 347 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 ANKRD60Q9BZ19 345 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 MKRN2Q9H000 416 aaKnown RBP5.37□□□□□ -1.55
LIMA1-215ENST00000552823 SLC28A3Q9HAS3 691 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 PRSS16Q9NQE7 514 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 KRT84Q9NSB2 600 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 RLIMQ9NVW2 624 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 HSFX1Q9UBD0 423 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 STON1Q9Y6Q2 735 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 COMMD3-BMI1R4GMX3 469 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 MED12Q93074 2177 aa5.37□□□□□ -1.55
LIMA1-215ENST00000552823 A0A1W2PQU0 124 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 A0A1W2PRB8 838 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 SLC5A10A0PJK1 596 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 SMIM30A4D0T7 59 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 EPOPA6NHQ4 379 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 LCMT2O60294 686 aaKnown RBP5.36□□□□□ -1.55
LIMA1-215ENST00000552823 KCNK5O95279 499 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 ANGPTL1O95841 491 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 FABP3P05413 133 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 GSTM1P09488 218 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 C1GALT1C1LP0DN25 315 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 CBSLP0DN79 551 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 UMPSP11172 480 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 CBSP35520 551 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 HNMTP50135 292 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 MAPK12P53778 367 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 PNLIPRP1P54315 467 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 GSTM4Q03013 218 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 FOXM1Q08050 763 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 ABHD18Q0P651 414 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 LSAMPQ13449 338 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 C1orf61Q13536 156 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 RUNX3Q13761 415 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 SLC5A12Q1EHB4 618 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 LEXMQ3ZCV2 418 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 OR2T5Q6IEZ7 315 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 ENPP7Q6UWV6 458 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 SLCO4C1Q6ZQN7 724 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 DPPA4Q7L190 304 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 PATL1Q86TB9 770 aaKnown RBP5.36□□□□□ -1.55
LIMA1-215ENST00000552823 RBM45Q8IUH3 476 aaKnown RBP5.36□□□□□ -1.55
LIMA1-215ENST00000552823 TTC29Q8NA56 475 aaPredicted RBP5.36□□□□□ -1.55
LIMA1-215ENST00000552823 GLB1L3Q8NCI6 653 aaPredicted RBP5.36□□□□□ -1.55
LIMA1-215ENST00000552823 DDHD1Q8NEL9 900 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 OR2T29Q8NH02 315 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 PATE1Q8WXA2 126 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 ATL1Q8WXF7 558 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 ISOC1Q96CN7 298 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 LYSMD1Q96S90 227 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 SLC29A3Q9BZD2 475 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 LHPPQ9H008 270 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 QRSL1Q9H0R6 528 aaKnown RBP5.36□□□□□ -1.55
LIMA1-215ENST00000552823 MIR1-1HGQ9H1L0 117 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 RAD21L1Q9H4I0 556 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 RDH14Q9HBH5 336 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 DCAF13Q9NV06 445 aaKnown RBP5.36□□□□□ -1.55
LIMA1-215ENST00000552823 TMEM184CQ9NVA4 438 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 SIRT5Q9NXA8 310 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 TMCO1Q9UM00 188 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 SLC6A14Q9UN76 642 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 DMTF1Q9Y222 760 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 FRMPD3Q5JV73 1810 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 HEATR5BQ9P2D3 2071 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 AHCTF1Q8WYP5 2266 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 LAMA1P25391 3075 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 KCNE1BA0A087WTH5 132 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 A0A096LPI6 279 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 SPINT1O43278 529 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 SLCO2B1O94956 709 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 NTN1O95631 604 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 FUCA1P04066 466 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 ALPLP05186 524 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 BCHEP06276 602 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 MPC1LP0DKB6 136 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 DDX5P17844 614 aaKnown RBP5.36□□□□□ -1.55
LIMA1-215ENST00000552823 IDSP22304 550 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 TIA1P31483 386 aaKnown RBP eCLIP5.36□□□□□ -1.55
LIMA1-215ENST00000552823 HPCAL1P37235 193 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 SSR2P43308 183 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 DAPP51397 102 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 RAD23AP54725 363 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 WNT3P56703 355 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 RAE1P78406 368 aaKnown RBP5.36□□□□□ -1.55
LIMA1-215ENST00000552823 HTRA4P83105 476 aaPredicted RBP5.36□□□□□ -1.55
LIMA1-215ENST00000552823 ELAVL3Q14576 367 aaKnown RBP5.36□□□□□ -1.55
LIMA1-215ENST00000552823 PDGFRLQ15198 375 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms