RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 GHDCQ8N2G8 530 aa15.12■□□□□ 0.01
CUX1-211ENST00000546411 OR4E2Q8NGC2 313 aa15.12■□□□□ 0.01
CUX1-211ENST00000546411 TAMM41Q96BW9 452 aa15.12■□□□□ 0.01
CUX1-211ENST00000546411 FBXL12Q9NXK8 326 aa15.12■□□□□ 0.01
CUX1-211ENST00000546411 DNAJC27Q9NZQ0 273 aa15.12■□□□□ 0.01
CUX1-211ENST00000546411 CRNNQ9UBG3 495 aaPredicted RBP15.12■□□□□ 0.01
CUX1-211ENST00000546411 CLEC4EQ9ULY5 219 aa15.12■□□□□ 0.01
CUX1-211ENST00000546411 CAB39Q9Y376 341 aaPredicted RBP15.12■□□□□ 0.01
CUX1-211ENST00000546411 EPCAMP16422 314 aa15.12■□□□□ 0.01
CUX1-211ENST00000546411 HOXB6P17509 224 aaKnown RBP15.12■□□□□ 0.01
CUX1-211ENST00000546411 RNF144AP50876 292 aaPredicted RBP15.12■□□□□ 0.01
CUX1-211ENST00000546411 RNASE12Q5GAN4 147 aaKnown RBP15.12■□□□□ 0.01
CUX1-211ENST00000546411 FAM131AQ6UXB0 335 aa15.12■□□□□ 0.01
CUX1-211ENST00000546411 WDR48Q8TAF3 677 aa15.12■□□□□ 0.01
CUX1-211ENST00000546411 TBC1D17Q9HA65 648 aa15.12■□□□□ 0.01
CUX1-211ENST00000546411 TM9SF3Q9HD45 589 aa15.12■□□□□ 0.01
CUX1-211ENST00000546411 RIMKLBQ9ULI2 386 aa15.12■□□□□ 0.01
CUX1-211ENST00000546411 LSM1O15116 133 aaKnown RBP15.11■□□□□ 0.01
CUX1-211ENST00000546411 RB1P06400 928 aa15.11■□□□□ 0.01
CUX1-211ENST00000546411 CD247P20963 164 aa15.11■□□□□ 0.01
CUX1-211ENST00000546411 CTGFP29279 349 aa15.11■□□□□ 0.01
CUX1-211ENST00000546411 PDHA2P29803 388 aa15.11■□□□□ 0.01
CUX1-211ENST00000546411 COPZ1P61923 177 aa15.11■□□□□ 0.01
CUX1-211ENST00000546411 DNASE1L3Q13609 305 aa15.11■□□□□ 0.01
CUX1-211ENST00000546411 DHCR24Q15392 516 aa15.11■□□□□ 0.01
CUX1-211ENST00000546411 IQCCQ4KMZ1 466 aa15.11■□□□□ 0.01
CUX1-211ENST00000546411 GAREM2Q75VX8 874 aa15.11■□□□□ 0.01
CUX1-211ENST00000546411 ZNF671Q8TAW3 534 aa15.11■□□□□ 0.01
CUX1-211ENST00000546411 REEP4Q9H6H4 257 aa15.11■□□□□ 0.01
CUX1-211ENST00000546411 INMTO95050 263 aa15.11■□□□□ 0.01
CUX1-211ENST00000546411 MT-ND2P03891 347 aa15.11■□□□□ 0.01
CUX1-211ENST00000546411 ZNF26P17031 533 aaPredicted RBP15.11■□□□□ 0.01
CUX1-211ENST00000546411 CST5P28325 142 aaPredicted RBP15.11■□□□□ 0.01
CUX1-211ENST00000546411 DCTP40126 519 aa15.11■□□□□ 0.01
CUX1-211ENST00000546411 VEGFBP49765 207 aa15.11■□□□□ 0.01
CUX1-211ENST00000546411 MC1RQ01726 317 aa15.11■□□□□ 0.01
CUX1-211ENST00000546411 ID2Q02363 134 aa15.11■□□□□ 0.01
CUX1-211ENST00000546411 RAPSNQ13702 412 aa15.11■□□□□ 0.01
CUX1-211ENST00000546411 OXR1Q8N573 874 aa15.11■□□□□ 0.01
CUX1-211ENST00000546411 UXS1Q8NBZ7 420 aa15.11■□□□□ 0.01
CUX1-211ENST00000546411 TBX5Q99593 518 aa15.11■□□□□ 0.01
CUX1-211ENST00000546411 SLC12A9Q9BXP2 914 aa15.11■□□□□ 0.01
CUX1-211ENST00000546411 UTS2RQ9UKP6 389 aa15.11■□□□□ 0.01
CUX1-211ENST00000546411 LOC101059915A0A1B0GWI6 518 aaPredicted RBP15.11■□□□□ 0.01
CUX1-211ENST00000546411 COQ5Q5HYK3 327 aa15.11■□□□□ 0.01
CUX1-211ENST00000546411 KLHL17Q6TDP4 642 aa15.11■□□□□ 0.01
CUX1-211ENST00000546411 OR7G3Q8NG95 312 aa15.11■□□□□ 0.01
CUX1-211ENST00000546411 WFIKKN2Q8TEU8 576 aa15.11■□□□□ 0.01
CUX1-211ENST00000546411 ZNF419Q96HQ0 510 aaPredicted RBP15.11■□□□□ 0.01
CUX1-211ENST00000546411 FCRL4Q96PJ5 515 aa15.11■□□□□ 0.01
CUX1-211ENST00000546411 ALPK1Q96QP1 1244 aa15.11■□□□□ 0.01
CUX1-211ENST00000546411 ZNF347Q96SE7 839 aa15.11■□□□□ 0.01
CUX1-211ENST00000546411 FEVQ99581 238 aa15.11■□□□□ 0.01
CUX1-211ENST00000546411 YTHDF1Q9BYJ9 559 aaKnown RBP15.11■□□□□ 0.01
CUX1-211ENST00000546411 PRLP01236 227 aa15.1■□□□□ 0.01
CUX1-211ENST00000546411 TIA1P31483 386 aaKnown RBP eCLIP15.1■□□□□ 0.012e-8■■■■■ 40
CUX1-211ENST00000546411 CCT3P49368 545 aaKnown RBP15.1■□□□□ 0.01
CUX1-211ENST00000546411 ANGPT1Q15389 498 aa15.1■□□□□ 0.01
CUX1-211ENST00000546411 LIPJQ5W064 366 aa15.1■□□□□ 0.01
CUX1-211ENST00000546411 BHLHA9Q7RTU4 235 aa15.1■□□□□ 0.01
CUX1-211ENST00000546411 ZNF551Q7Z340 670 aaPredicted RBP15.1■□□□□ 0.01
CUX1-211ENST00000546411 PELI3Q8N2H9 469 aa15.1■□□□□ 0.01
CUX1-211ENST00000546411 CADM2Q8N3J6 435 aa15.1■□□□□ 0.01
CUX1-211ENST00000546411 C7orf57Q8NEG2 295 aa15.1■□□□□ 0.01
CUX1-211ENST00000546411 VMP1Q96GC9 406 aa15.1■□□□□ 0.01
CUX1-211ENST00000546411 MAELQ96JY0 434 aaKnown RBP15.1■□□□□ 0.01
CUX1-211ENST00000546411 OR51V1Q9H2C8 321 aa15.1■□□□□ 0.01
CUX1-211ENST00000546411 SRMSQ9H3Y6 488 aa15.1■□□□□ 0.01
CUX1-211ENST00000546411 TRIP12Q14669 1992 aaPredicted RBP15.1■□□□□ 0.01
CUX1-211ENST00000546411 C1GALT1C1LP0DN25 315 aa15.1■□□□□ 0.01
CUX1-211ENST00000546411 MYF6P23409 242 aa15.1■□□□□ 0.01
CUX1-211ENST00000546411 CMPK1P30085 196 aa15.1■□□□□ 0.01
CUX1-211ENST00000546411 HLCSP50747 726 aa15.1■□□□□ 0.01
CUX1-211ENST00000546411 PNLIPRP1P54315 467 aa15.1■□□□□ 0.01
CUX1-211ENST00000546411 PCDH1Q08174 1060 aa15.1■□□□□ 0.01
CUX1-211ENST00000546411 NAGSQ8N159 534 aa15.1■□□□□ 0.01
CUX1-211ENST00000546411 GEMIN6Q8WXD5 167 aaKnown RBP15.1■□□□□ 0.01
CUX1-211ENST00000546411 SMPDL3AQ92484 453 aa15.1■□□□□ 0.01
CUX1-211ENST00000546411 GTF2H4Q92759 462 aa15.1■□□□□ 0.01
CUX1-211ENST00000546411 OR1A2Q9Y585 309 aa15.1■□□□□ 0.01
CUX1-211ENST00000546411 ARHGEF33A8MVX0 844 aa15.1■□□□□ 0.01
CUX1-211ENST00000546411 DYRK3O43781 588 aa15.1■□□□□ 0.01
CUX1-211ENST00000546411 FSHRP23945 695 aa15.1■□□□□ 0.01
CUX1-211ENST00000546411 CLCN7P51798 805 aa15.1■□□□□ 0.01
CUX1-211ENST00000546411 PRR5P85299 388 aa15.1■□□□□ 0.01
CUX1-211ENST00000546411 KIAA1161Q6NSJ0 714 aa15.1■□□□□ 0.01
CUX1-211ENST00000546411 SBSNQ6UWP8 590 aa15.1■□□□□ 0.01
CUX1-211ENST00000546411 PRSS58Q8IYP2 241 aa15.1■□□□□ 0.01
CUX1-211ENST00000546411 LILRA3Q8N6C8 439 aaPredicted RBP15.1■□□□□ 0.01
CUX1-211ENST00000546411 DIRAS2Q96HU8 199 aa15.1■□□□□ 0.01
CUX1-211ENST00000546411 STOX2Q9P2F5 926 aaPredicted RBP15.1■□□□□ 0.01
CUX1-211ENST00000546411 MSRAQ9UJ68 235 aa15.1■□□□□ 0.01
CUX1-211ENST00000546411 NDRG2Q9UN36 371 aaKnown RBP15.1■□□□□ 0.01
CUX1-211ENST00000546411 A0A1W2PP55 124 aa15.09■□□□□ 0.01
CUX1-211ENST00000546411 H0YAE9 185 aa15.09■□□□□ 0.01
CUX1-211ENST00000546411 M0R129 80 aa15.09■□□□□ 0.01
CUX1-211ENST00000546411 TLX2O43763 284 aaPredicted RBP15.09■□□□□ 0.01
CUX1-211ENST00000546411 CLPXO76031 633 aa15.09■□□□□ 0.01
CUX1-211ENST00000546411 SLC35G6P0C7Q6 338 aa15.09■□□□□ 0.01
CUX1-211ENST00000546411 XKP51811 444 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms