RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 MRRFQ96E11 262 aaKnown RBP10.05□□□□□ -0.8
CD44-227ENST00000528086 PEX11GQ96HA9 241 aa10.05□□□□□ -0.8
CD44-227ENST00000528086 THOC3Q96J01 351 aaKnown RBP10.05□□□□□ -0.8
CD44-227ENST00000528086 QRFPRQ96P65 431 aa10.05□□□□□ -0.8
CD44-227ENST00000528086 EGFL8Q99944 293 aa10.05□□□□□ -0.8
CD44-227ENST00000528086 YIPF2Q9BWQ6 316 aa10.05□□□□□ -0.8
CD44-227ENST00000528086 LHPPQ9H008 270 aa10.05□□□□□ -0.8
CD44-227ENST00000528086 EPB41L4BQ9H329 900 aa10.05□□□□□ -0.8
CD44-227ENST00000528086 ACSS3Q9H6R3 686 aa10.05□□□□□ -0.8
CD44-227ENST00000528086 ALG9Q9H6U8 611 aa10.05□□□□□ -0.8
CD44-227ENST00000528086 C14orf105Q9NVL8 296 aa10.05□□□□□ -0.8
CD44-227ENST00000528086 MKL2Q9ULH7 1088 aa10.05□□□□□ -0.8
CD44-227ENST00000528086 PCDHGA10Q9Y5H3 936 aa10.05□□□□□ -0.8
CD44-227ENST00000528086 NBPF19A0A087WUL8 3843 aa10.05□□□□□ -0.8
CD44-227ENST00000528086 SPTAN1Q13813 2472 aaKnown RBP10.05□□□□□ -0.8
CD44-227ENST00000528086 A0A0G2JN53 185 aa10.04□□□□□ -0.8
CD44-227ENST00000528086 LRIT2A6NDA9 550 aa10.04□□□□□ -0.8
CD44-227ENST00000528086 TTLL8A6PVC2 850 aa10.04□□□□□ -0.8
CD44-227ENST00000528086 TCP11X1B4DZS4 312 aa10.04□□□□□ -0.8
CD44-227ENST00000528086 MAP2K7O14733 419 aa10.04□□□□□ -0.8
CD44-227ENST00000528086 DPM1O60762 260 aa10.04□□□□□ -0.8
CD44-227ENST00000528086 CDC123O75794 336 aaPredicted RBP10.04□□□□□ -0.8
CD44-227ENST00000528086 WFS1O76024 890 aa10.04□□□□□ -0.8
CD44-227ENST00000528086 TFEBP19484 476 aa10.04□□□□□ -0.8
CD44-227ENST00000528086 GNLYP22749 145 aa10.04□□□□□ -0.8
CD44-227ENST00000528086 STX2P32856 288 aa10.04□□□□□ -0.8
CD44-227ENST00000528086 HNF4AP41235 474 aa10.04□□□□□ -0.8
CD44-227ENST00000528086 AVPR1BP47901 424 aa10.04□□□□□ -0.8
CD44-227ENST00000528086 ST13P50502 369 aaKnown RBP10.04□□□□□ -0.8
CD44-227ENST00000528086 HNRNPFP52597 415 aaKnown RBP10.04□□□□□ -0.8
CD44-227ENST00000528086 ATP6V0D1P61421 351 aa10.04□□□□□ -0.8
CD44-227ENST00000528086 BTG2P78543 158 aa10.04□□□□□ -0.8
CD44-227ENST00000528086 CDC16Q13042 620 aa10.04□□□□□ -0.8
CD44-227ENST00000528086 RUNX2Q13950 521 aa10.04□□□□□ -0.8
CD44-227ENST00000528086 DOC2AQ14183 400 aa10.04□□□□□ -0.8
CD44-227ENST00000528086 SLBPQ14493 270 aaKnown RBP eCLIP10.04□□□□□ -0.8
CD44-227ENST00000528086 NDUFA9Q16795 377 aa10.04□□□□□ -0.8
CD44-227ENST00000528086 ADPRMQ3LIE5 342 aa10.04□□□□□ -0.8
CD44-227ENST00000528086 CDKL4Q5MAI5 379 aa10.04□□□□□ -0.8
CD44-227ENST00000528086 UBE3DQ7Z6J8 389 aa10.04□□□□□ -0.8
CD44-227ENST00000528086 ANKRD37Q7Z713 158 aa10.04□□□□□ -0.8
CD44-227ENST00000528086 RNF175Q8N4F7 328 aa10.04□□□□□ -0.8
CD44-227ENST00000528086 TMEM151AQ8N4L1 468 aa10.04□□□□□ -0.8
CD44-227ENST00000528086 CISD2Q8N5K1 135 aaKnown RBP10.04□□□□□ -0.8
CD44-227ENST00000528086 PLPP5Q8NEB5 264 aa10.04□□□□□ -0.8
CD44-227ENST00000528086 SLC44A1Q8WWI5 657 aa10.04□□□□□ -0.8
CD44-227ENST00000528086 ISL2Q96A47 359 aa10.04□□□□□ -0.8
CD44-227ENST00000528086 MS4A6EQ96DS6 147 aa10.04□□□□□ -0.8
CD44-227ENST00000528086 TSPAN17Q96FV3 270 aa10.04□□□□□ -0.8
CD44-227ENST00000528086 TXLNGYQ9BZA5 131 aa10.04□□□□□ -0.8
CD44-227ENST00000528086 ANKHQ9HCJ1 492 aa10.04□□□□□ -0.8
CD44-227ENST00000528086 SNX15Q9NRS6 342 aa10.04□□□□□ -0.8
CD44-227ENST00000528086 ASF1BQ9NVP2 202 aa10.04□□□□□ -0.8
CD44-227ENST00000528086 PLA2G3Q9NZ20 509 aa10.04□□□□□ -0.8
CD44-227ENST00000528086 B3GNT3Q9Y2A9 372 aa10.04□□□□□ -0.8
CD44-227ENST00000528086 KCNE2Q9Y6J6 123 aa10.04□□□□□ -0.8
CD44-227ENST00000528086 IGKV3D-11A0A0A0MRZ8 115 aa10.03□□□□□ -0.8
CD44-227ENST00000528086 NSG1A0A0A6YYJ2 146 aa10.03□□□□□ -0.8
CD44-227ENST00000528086 KLK8O60259 260 aa10.03□□□□□ -0.8
CD44-227ENST00000528086 KERAO60938 352 aa10.03□□□□□ -0.8
CD44-227ENST00000528086 SEC24DO94855 1032 aaPredicted RBP10.03□□□□□ -0.8
CD44-227ENST00000528086 ACSL3O95573 720 aa10.03□□□□□ -0.8
CD44-227ENST00000528086 SERPINA7P05543 415 aa10.03□□□□□ -0.8
CD44-227ENST00000528086 SERPIND1P05546 499 aa10.03□□□□□ -0.8
CD44-227ENST00000528086 HEXBP07686 556 aa10.03□□□□□ -0.8
CD44-227ENST00000528086 SERPINA6P08185 405 aa10.03□□□□□ -0.8
CD44-227ENST00000528086 SBK3P0C264 359 aa10.03□□□□□ -0.8
CD44-227ENST00000528086 FAM153BP0C7A2 387 aa10.03□□□□□ -0.8
CD44-227ENST00000528086 SLC35G6P0C7Q6 338 aa10.03□□□□□ -0.8
CD44-227ENST00000528086 C8orf89P0DMQ9 161 aa10.03□□□□□ -0.8
CD44-227ENST00000528086 PCDH1Q08174 1060 aa10.03□□□□□ -0.8
CD44-227ENST00000528086 MFAP5Q13361 173 aa10.03□□□□□ -0.8
CD44-227ENST00000528086 MRPL49Q13405 166 aaKnown RBP10.03□□□□□ -0.8
CD44-227ENST00000528086 NAB1Q13506 487 aa10.03□□□□□ -0.8
CD44-227ENST00000528086 SLMAPQ14BN4 828 aa10.03□□□□□ -0.8
CD44-227ENST00000528086 RBBP5Q15291 538 aaKnown RBP10.03□□□□□ -0.8
CD44-227ENST00000528086 FAM153CQ494X1 144 aa10.03□□□□□ -0.8
CD44-227ENST00000528086 TOR1AIP1Q5JTV8 583 aa10.03□□□□□ -0.8
CD44-227ENST00000528086 SULT1C3Q6IMI6 304 aa10.03□□□□□ -0.8
CD44-227ENST00000528086 H3F3CQ6NXT2 135 aa10.03□□□□□ -0.8
CD44-227ENST00000528086 LINC00696Q6ZRV3 163 aa10.03□□□□□ -0.8
CD44-227ENST00000528086 CPEB2Q7Z5Q1 589 aaKnown RBP10.03□□□□□ -0.8
CD44-227ENST00000528086 HPS6Q86YV9 775 aa10.03□□□□□ -0.8
CD44-227ENST00000528086 CA13Q8N1Q1 262 aa10.03□□□□□ -0.8
CD44-227ENST00000528086 SIRT6Q8N6T7 355 aa10.03□□□□□ -0.8
CD44-227ENST00000528086 UHMK1Q8TAS1 419 aaKnown RBP10.03□□□□□ -0.8
CD44-227ENST00000528086 UBTD2Q8WUN7 234 aa10.03□□□□□ -0.8
CD44-227ENST00000528086 DCAKDQ8WVC6 231 aa10.03□□□□□ -0.8
CD44-227ENST00000528086 IFT81Q8WYA0 676 aa10.03□□□□□ -0.8
CD44-227ENST00000528086 EXT2Q93063 718 aa10.03□□□□□ -0.8
CD44-227ENST00000528086 AIF1LQ9BQI0 150 aa10.03□□□□□ -0.8
CD44-227ENST00000528086 FAM129AQ9BZQ8 928 aa10.03□□□□□ -0.8
CD44-227ENST00000528086 CD244Q9BZW8 370 aa10.03□□□□□ -0.8
CD44-227ENST00000528086 NT5DC2Q9H857 520 aa10.03□□□□□ -0.8
CD44-227ENST00000528086 DNAJC11Q9NVH1 559 aa10.03□□□□□ -0.8
CD44-227ENST00000528086 DYRK1BQ9Y463 629 aa10.03□□□□□ -0.8
CD44-227ENST00000528086 E2F3O00716 465 aa10.02□□□□□ -0.81
CD44-227ENST00000528086 PRPF4O43172 522 aaKnown RBP eCLIP10.02□□□□□ -0.81
CD44-227ENST00000528086 STK16O75716 305 aa10.02□□□□□ -0.81
CD44-227ENST00000528086 CBX6O95503 412 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms