RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 CMTM7Q96FZ5 175 aa13.05□□□□□ -0.32
CD44-224ENST00000526669 SORBS1Q9BX66 1292 aaKnown RBP13.05□□□□□ -0.32
CD44-224ENST00000526669 ACPTQ9BZG2 426 aa13.05□□□□□ -0.32
CD44-224ENST00000526669 SLC6A16Q9GZN6 736 aa13.05□□□□□ -0.32
CD44-224ENST00000526669 TXLNGQ9NUQ3 528 aa13.05□□□□□ -0.32
CD44-224ENST00000526669 GIMAP2Q9UG22 337 aa13.05□□□□□ -0.32
CD44-224ENST00000526669 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.05□□□□□ -0.32
CD44-224ENST00000526669 DNAJC15Q9Y5T4 150 aa13.05□□□□□ -0.32
CD44-224ENST00000526669 AK5Q9Y6K8 562 aa13.05□□□□□ -0.32
CD44-224ENST00000526669 NCOR2Q9Y618 2525 aa13.04□□□□□ -0.32
CD44-224ENST00000526669 A0A0A6YYC8 382 aaPredicted RBP13.04□□□□□ -0.32
CD44-224ENST00000526669 FITM1A5D6W6 292 aa13.04□□□□□ -0.32
CD44-224ENST00000526669 LRIT2A6NDA9 550 aa13.04□□□□□ -0.32
CD44-224ENST00000526669 TRABD2BA6NFA1 517 aa13.04□□□□□ -0.32
CD44-224ENST00000526669 I3L1I5 382 aaPredicted RBP13.04□□□□□ -0.32
CD44-224ENST00000526669 TXNDC9O14530 226 aa13.04□□□□□ -0.32
CD44-224ENST00000526669 FGF4P08620 206 aa13.04□□□□□ -0.32
CD44-224ENST00000526669 VIMP08670 466 aaKnown RBP13.04□□□□□ -0.32
CD44-224ENST00000526669 GSTM2P28161 218 aa13.04□□□□□ -0.32
CD44-224ENST00000526669 RBMS1P29558 406 aaKnown RBP13.04□□□□□ -0.32
CD44-224ENST00000526669 SERPINB1P30740 379 aa13.04□□□□□ -0.32
CD44-224ENST00000526669 GCGRP47871 477 aa13.04□□□□□ -0.32
CD44-224ENST00000526669 RAP1GDS1P52306 607 aa13.04□□□□□ -0.32
CD44-224ENST00000526669 PLA2G16P53816 162 aa13.04□□□□□ -0.32
CD44-224ENST00000526669 STXBP1P61764 594 aaKnown RBP13.04□□□□□ -0.32
CD44-224ENST00000526669 SF3A3Q12874 501 aaKnown RBP eCLIP13.04□□□□□ -0.32
CD44-224ENST00000526669 SLC9A5Q14940 896 aa13.04□□□□□ -0.32
CD44-224ENST00000526669 UGT3A2Q3SY77 523 aa13.04□□□□□ -0.32
CD44-224ENST00000526669 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.04□□□□□ -0.32
CD44-224ENST00000526669 KHDRBS2Q5VWX1 349 aaKnown RBP13.04□□□□□ -0.32
CD44-224ENST00000526669 TMEM214Q6NUQ4 689 aaKnown RBP13.04□□□□□ -0.32
CD44-224ENST00000526669 RGS9BPQ6ZS82 235 aa13.04□□□□□ -0.32
CD44-224ENST00000526669 AFAP1L2Q8N4X5 818 aa13.04□□□□□ -0.32
CD44-224ENST00000526669 SLC38A9Q8NBW4 561 aa13.04□□□□□ -0.32
CD44-224ENST00000526669 OR2T11Q8NH01 316 aa13.04□□□□□ -0.32
CD44-224ENST00000526669 ZDHHC19Q8WVZ1 309 aaPredicted RBP13.04□□□□□ -0.32
CD44-224ENST00000526669 GAL3ST3Q96A11 431 aa13.04□□□□□ -0.32
CD44-224ENST00000526669 MS4A6EQ96DS6 147 aa13.04□□□□□ -0.32
CD44-224ENST00000526669 C17orf62Q9BQA9 187 aa13.04□□□□□ -0.32
CD44-224ENST00000526669 NDC1Q9BTX1 674 aa13.04□□□□□ -0.32
CD44-224ENST00000526669 DDA1Q9BW61 102 aa13.04□□□□□ -0.32
CD44-224ENST00000526669 NUF2Q9BZD4 464 aa13.04□□□□□ -0.32
CD44-224ENST00000526669 ULBP3Q9BZM4 244 aa13.04□□□□□ -0.32
CD44-224ENST00000526669 REXO4Q9GZR2 422 aaKnown RBP13.04□□□□□ -0.32
CD44-224ENST00000526669 ADGRE2Q9UHX3 823 aa13.04□□□□□ -0.32
CD44-224ENST00000526669 HAO1Q9UJM8 370 aa13.04□□□□□ -0.32
CD44-224ENST00000526669 WASF3Q9UPY6 502 aa13.04□□□□□ -0.32
CD44-224ENST00000526669 TSC22D4Q9Y3Q8 395 aa13.04□□□□□ -0.32
CD44-224ENST00000526669 PCDHGA8Q9Y5G5 932 aa13.04□□□□□ -0.32
CD44-224ENST00000526669 MAU2Q9Y6X3 613 aa13.04□□□□□ -0.32
CD44-224ENST00000526669 CEP295Q9C0D2 2601 aa13.04□□□□□ -0.32
CD44-224ENST00000526669 SGK494L7N484 410 aa13.03□□□□□ -0.32
CD44-224ENST00000526669 FOXE1O00358 373 aaPredicted RBP13.03□□□□□ -0.32
CD44-224ENST00000526669 PLPP1O14494 284 aa13.03□□□□□ -0.32
CD44-224ENST00000526669 DSCR3O14972 297 aa13.03□□□□□ -0.32
CD44-224ENST00000526669 BRINP1O60477 761 aa13.03□□□□□ -0.32
CD44-224ENST00000526669 CPNE3O75131 537 aaKnown RBP13.03□□□□□ -0.32
CD44-224ENST00000526669 STK17BO94768 372 aa13.03□□□□□ -0.32
CD44-224ENST00000526669 SLC5A2P31639 672 aa13.03□□□□□ -0.32
CD44-224ENST00000526669 OR1D4P47884 311 aa13.03□□□□□ -0.32
CD44-224ENST00000526669 GNGT1P63211 74 aa13.03□□□□□ -0.32
CD44-224ENST00000526669 OLR1P78380 273 aa13.03□□□□□ -0.32
CD44-224ENST00000526669 CSTF3Q12996 717 aaKnown RBP13.03□□□□□ -0.32
CD44-224ENST00000526669 NR6A1Q15406 480 aa13.03□□□□□ -0.32
CD44-224ENST00000526669 NDUFA9Q16795 377 aa13.03□□□□□ -0.32
CD44-224ENST00000526669 MUM1Q2TAK8 710 aa13.03□□□□□ -0.32
CD44-224ENST00000526669 DEFB134Q4QY38 66 aa13.03□□□□□ -0.32
CD44-224ENST00000526669 DEPDC1Q5TB30 811 aa13.03□□□□□ -0.32
CD44-224ENST00000526669 TMEM164Q5U3C3 297 aa13.03□□□□□ -0.32
CD44-224ENST00000526669 TRIM40Q6P9F5 258 aa13.03□□□□□ -0.32
CD44-224ENST00000526669 CHSY3Q70JA7 882 aa13.03□□□□□ -0.32
CD44-224ENST00000526669 UBE3DQ7Z6J8 389 aa13.03□□□□□ -0.32
CD44-224ENST00000526669 BPHLQ86WA6 291 aaPredicted RBP13.03□□□□□ -0.32
CD44-224ENST00000526669 PDSS2Q86YH6 399 aa13.03□□□□□ -0.32
CD44-224ENST00000526669 WDR75Q8IWA0 830 aaKnown RBP13.03□□□□□ -0.32
CD44-224ENST00000526669 LRRC34Q8IZ02 419 aa13.03□□□□□ -0.32
CD44-224ENST00000526669 SHISA5Q8N114 240 aa13.03□□□□□ -0.32
CD44-224ENST00000526669 ARHGEF39Q8N4T4 335 aa13.03□□□□□ -0.32
CD44-224ENST00000526669 AMER3Q8N944 861 aa13.03□□□□□ -0.32
CD44-224ENST00000526669 GALNT6Q8NCL4 622 aa13.03□□□□□ -0.32
CD44-224ENST00000526669 OR2L5Q8NG80 312 aa13.03□□□□□ -0.32
CD44-224ENST00000526669 OR9A4Q8NGU2 314 aa13.03□□□□□ -0.32
CD44-224ENST00000526669 SEC16BQ96JE7 1060 aa13.03□□□□□ -0.32
CD44-224ENST00000526669 C3orf30Q96M34 536 aa13.03□□□□□ -0.32
CD44-224ENST00000526669 C7orf26Q96N11 449 aa13.03□□□□□ -0.32
CD44-224ENST00000526669 SERPINI1Q99574 410 aa13.03□□□□□ -0.32
CD44-224ENST00000526669 MRPL1Q9BYD6 325 aaKnown RBP13.03□□□□□ -0.32
CD44-224ENST00000526669 BRF2Q9HAW0 419 aa13.03□□□□□ -0.32
CD44-224ENST00000526669 ANKHQ9HCJ1 492 aa13.03□□□□□ -0.32
CD44-224ENST00000526669 FGFR1OP2Q9NVK5 253 aa13.03□□□□□ -0.32
CD44-224ENST00000526669 PCDHB3Q9Y5E6 796 aa13.03□□□□□ -0.32
CD44-224ENST00000526669 APC2O95996 2303 aa13.03□□□□□ -0.32
CD44-224ENST00000526669 ATP6AP2A0A1C7CYW4 349 aa13.02□□□□□ -0.33
CD44-224ENST00000526669 URADA6NGE7 173 aa13.02□□□□□ -0.33
CD44-224ENST00000526669 SLC28A1O00337 649 aa13.02□□□□□ -0.33
CD44-224ENST00000526669 FOXS1O43638 330 aa13.02□□□□□ -0.33
CD44-224ENST00000526669 EDF1O60869 148 aaKnown RBP13.02□□□□□ -0.33
CD44-224ENST00000526669 RDH16O75452 317 aa13.02□□□□□ -0.33
CD44-224ENST00000526669 ATP6AP2O75787 350 aa13.02□□□□□ -0.33
CD44-224ENST00000526669 KLHL18O94889 574 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms