RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 CCDC157Q569K6 752 aa13.57□□□□□ -0.24
SKA1-202ENST00000398452 MANEAQ5SRI9 462 aa13.57□□□□□ -0.24
SKA1-202ENST00000398452 IL23RQ5VWK5 629 aa13.57□□□□□ -0.24
SKA1-202ENST00000398452 OGFOD2Q6N063 350 aa13.57□□□□□ -0.24
SKA1-202ENST00000398452 RNF44Q7L0R7 432 aa13.57□□□□□ -0.24
SKA1-202ENST00000398452 TRPM8Q7Z2W7 1104 aa13.57□□□□□ -0.24
SKA1-202ENST00000398452 NUDT13Q86X67 352 aa13.57□□□□□ -0.24
SKA1-202ENST00000398452 ANKRD53Q8N9V6 530 aa13.57□□□□□ -0.24
SKA1-202ENST00000398452 OR4D9Q8NGE8 314 aa13.57□□□□□ -0.24
SKA1-202ENST00000398452 OR2T11Q8NH01 316 aa13.57□□□□□ -0.24
SKA1-202ENST00000398452 ERP27Q96DN0 273 aa13.57□□□□□ -0.24
SKA1-202ENST00000398452 PPM1MQ96MI6 270 aa13.57□□□□□ -0.24
SKA1-202ENST00000398452 ZBTB18Q99592 522 aa13.57□□□□□ -0.24
SKA1-202ENST00000398452 NUDT22Q9BRQ3 303 aa13.57□□□□□ -0.24
SKA1-202ENST00000398452 C1orf50Q9BV19 199 aa13.57□□□□□ -0.24
SKA1-202ENST00000398452 MS4A8Q9BY19 250 aa13.57□□□□□ -0.24
SKA1-202ENST00000398452 ROGDIQ9GZN7 287 aa13.57□□□□□ -0.24
SKA1-202ENST00000398452 OR51B5Q9H339 312 aa13.57□□□□□ -0.24
SKA1-202ENST00000398452 ATXN7L1Q9ULK2 861 aaPredicted RBP13.57□□□□□ -0.24
SKA1-202ENST00000398452 PLCL2Q9UPR0 1127 aa13.57□□□□□ -0.24
SKA1-202ENST00000398452 POLR3HQ9Y535 204 aaPredicted RBP13.57□□□□□ -0.24
SKA1-202ENST00000398452 GNG14A0A1W2PPG7 69 aa13.56□□□□□ -0.24
SKA1-202ENST00000398452 KIF1CO43896 1103 aaKnown RBP13.56□□□□□ -0.24
SKA1-202ENST00000398452 DDX5P17844 614 aaKnown RBP13.56□□□□□ -0.24
SKA1-202ENST00000398452 ADSLP30566 484 aaPredicted RBP13.56□□□□□ -0.24
SKA1-202ENST00000398452 SSR2P43308 183 aa13.56□□□□□ -0.24
SKA1-202ENST00000398452 VSX2P58304 361 aaPredicted RBP13.56□□□□□ -0.24
SKA1-202ENST00000398452 FOXC1Q12948 553 aa13.56□□□□□ -0.24
SKA1-202ENST00000398452 ILKQ13418 452 aa13.56□□□□□ -0.24
SKA1-202ENST00000398452 MAPRE2Q15555 327 aa13.56□□□□□ -0.24
SKA1-202ENST00000398452 TOR1AIP1Q5JTV8 583 aa13.56□□□□□ -0.24
SKA1-202ENST00000398452 TCTE1Q5JU00 501 aa13.56□□□□□ -0.24
SKA1-202ENST00000398452 PHF19Q5T6S3 580 aa13.56□□□□□ -0.24
SKA1-202ENST00000398452 DEPDC1Q5TB30 811 aa13.56□□□□□ -0.24
SKA1-202ENST00000398452 FBXO42Q6P3S6 717 aa13.56□□□□□ -0.24
SKA1-202ENST00000398452 ABHD13Q7L211 337 aa13.56□□□□□ -0.24
SKA1-202ENST00000398452 PACS2Q86VP3 889 aa13.56□□□□□ -0.24
SKA1-202ENST00000398452 MCATQ8IVS2 390 aaKnown RBP13.56□□□□□ -0.24
SKA1-202ENST00000398452 GPR135Q8IZ08 494 aa13.56□□□□□ -0.24
SKA1-202ENST00000398452 MIER2Q8N344 545 aa13.56□□□□□ -0.24
SKA1-202ENST00000398452 RNF175Q8N4F7 328 aa13.56□□□□□ -0.24
SKA1-202ENST00000398452 C1orf52Q8N6N3 182 aaKnown RBP13.56□□□□□ -0.24
SKA1-202ENST00000398452 CSNK1A1LQ8N752 337 aa13.56□□□□□ -0.24
SKA1-202ENST00000398452 TTC29Q8NA56 475 aaPredicted RBP13.56□□□□□ -0.24
SKA1-202ENST00000398452 DEFB124Q8NES8 71 aa13.56□□□□□ -0.24
SKA1-202ENST00000398452 TMEM74Q96NL1 305 aa13.56□□□□□ -0.24
SKA1-202ENST00000398452 TUBB6Q9BUF5 446 aa13.56□□□□□ -0.24
SKA1-202ENST00000398452 CHRNA10Q9GZZ6 450 aa13.56□□□□□ -0.24
SKA1-202ENST00000398452 GIMAP2Q9UG22 337 aa13.56□□□□□ -0.24
SKA1-202ENST00000398452 ANGPTL2Q9UKU9 493 aa13.56□□□□□ -0.24
SKA1-202ENST00000398452 MAPRE3Q9UPY8 281 aa13.56□□□□□ -0.24
SKA1-202ENST00000398452 CAPN7Q9Y6W3 813 aa13.56□□□□□ -0.24
SKA1-202ENST00000398452 IGHV5-51A0A0C4DH38 117 aa13.55□□□□□ -0.24
SKA1-202ENST00000398452 A0A1W2PQM1 296 aa13.55□□□□□ -0.24
SKA1-202ENST00000398452 NPIPB8E9PQR5 432 aa13.55□□□□□ -0.24
SKA1-202ENST00000398452 H0YGG7 62 aa13.55□□□□□ -0.24
SKA1-202ENST00000398452 SAP18O00422 153 aaKnown RBP13.55□□□□□ -0.24
SKA1-202ENST00000398452 SLC22A2O15244 555 aa13.55□□□□□ -0.24
SKA1-202ENST00000398452 ERI3O43414 337 aaKnown RBP13.55□□□□□ -0.24
SKA1-202ENST00000398452 CTSVO60911 334 aa13.55□□□□□ -0.24
SKA1-202ENST00000398452 GUCY1B2O75343 617 aa13.55□□□□□ -0.24
SKA1-202ENST00000398452 KIAA0754O94854 1291 aa13.55□□□□□ -0.24
SKA1-202ENST00000398452 PRR35P0CG20 571 aa13.55□□□□□ -0.24
SKA1-202ENST00000398452 ACPPP15309 386 aa13.55□□□□□ -0.24
SKA1-202ENST00000398452 SPINK2P20155 84 aa13.55□□□□□ -0.24
SKA1-202ENST00000398452 CSF2RBP32927 897 aa13.55□□□□□ -0.24
SKA1-202ENST00000398452 ASMTP46597 345 aa13.55□□□□□ -0.24
SKA1-202ENST00000398452 ATP4BP51164 291 aa13.55□□□□□ -0.24
SKA1-202ENST00000398452 ARFIP1P53367 373 aa13.55□□□□□ -0.24
SKA1-202ENST00000398452 ARF3P61204 181 aaPredicted RBP13.55□□□□□ -0.24
SKA1-202ENST00000398452 ACY1Q03154 408 aa13.55□□□□□ -0.24
SKA1-202ENST00000398452 TUBB3Q13509 450 aa13.55□□□□□ -0.24
SKA1-202ENST00000398452 TRA2AQ13595 282 aaKnown RBP eCLIP13.55□□□□□ -0.24
SKA1-202ENST00000398452 ST3GAL2Q16842 350 aa13.55□□□□□ -0.24
SKA1-202ENST00000398452 FAM219BQ5XKK7 198 aa13.55□□□□□ -0.24
SKA1-202ENST00000398452 TMEM198Q66K66 360 aa13.55□□□□□ -0.24
SKA1-202ENST00000398452 ADNP2Q6IQ32 1131 aa13.55□□□□□ -0.24
SKA1-202ENST00000398452 NIPAL1Q6NVV3 410 aa13.55□□□□□ -0.24
SKA1-202ENST00000398452 CYP20A1Q6UW02 462 aa13.55□□□□□ -0.24
SKA1-202ENST00000398452 CCDC121Q6ZUS5 278 aa13.55□□□□□ -0.24
SKA1-202ENST00000398452 OR2L5Q8NG80 312 aa13.55□□□□□ -0.24
SKA1-202ENST00000398452 CDC26Q8NHZ8 85 aa13.55□□□□□ -0.24
SKA1-202ENST00000398452 NT5CQ8TCD5 201 aa13.55□□□□□ -0.24
SKA1-202ENST00000398452 CREB3L4Q8TEY5 395 aa13.55□□□□□ -0.24
SKA1-202ENST00000398452 STARD8Q92502 1023 aa13.55□□□□□ -0.24
SKA1-202ENST00000398452 GAL3ST3Q96A11 431 aa13.55□□□□□ -0.24
SKA1-202ENST00000398452 APIPQ96GX9 242 aa13.55□□□□□ -0.24
SKA1-202ENST00000398452 MARK4Q96L34 752 aa13.55□□□□□ -0.24
SKA1-202ENST00000398452 FCRL4Q96PJ5 515 aa13.55□□□□□ -0.24
SKA1-202ENST00000398452 KCNC2Q96PR1 638 aa13.55□□□□□ -0.24
SKA1-202ENST00000398452 OR2A5Q96R48 311 aa13.55□□□□□ -0.24
SKA1-202ENST00000398452 F2RL3Q96RI0 385 aa13.55□□□□□ -0.24
SKA1-202ENST00000398452 TBCDQ9BTW9 1192 aa13.55□□□□□ -0.24
SKA1-202ENST00000398452 MRPL1Q9BYD6 325 aaKnown RBP13.55□□□□□ -0.24
SKA1-202ENST00000398452 SLC7A5P2Q9GIP4 190 aa13.55□□□□□ -0.24
SKA1-202ENST00000398452 NMUR2Q9GZQ4 415 aa13.55□□□□□ -0.24
SKA1-202ENST00000398452 ZNF768Q9H5H4 540 aaKnown RBP13.55□□□□□ -0.24
SKA1-202ENST00000398452 SAR1AQ9NR31 198 aa13.55□□□□□ -0.24
SKA1-202ENST00000398452 WDR70Q9NW82 654 aa13.55□□□□□ -0.24
SKA1-202ENST00000398452 SERTAD3Q9UJW9 196 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms