RNA–Protein interactions for RNA: ENST00000595726.1

SHKBP1-208, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 684 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-208ENST00000595726 TTLL6Q8N841 843 aa19.05■□□□□ 0.64
SHKBP1-208ENST00000595726 CREBZFQ9NS37 354 aa19.05■□□□□ 0.64
SHKBP1-208ENST00000595726 C2CD5Q86YS7 1000 aa19.04■□□□□ 0.64
SHKBP1-208ENST00000595726 DPY19L2Q6NUT2 758 aa19.03■□□□□ 0.64
SHKBP1-208ENST00000595726 DNAJC10Q8IXB1 793 aa19.03■□□□□ 0.64
SHKBP1-208ENST00000595726 ZNF219Q9P2Y4 722 aaPredicted RBP19.03■□□□□ 0.64
SHKBP1-208ENST00000595726 ANKRD26Q9UPS8 1709 aa19.03■□□□□ 0.64
SHKBP1-208ENST00000595726 SERPINB2P05120 415 aa19.02■□□□□ 0.64
SHKBP1-208ENST00000595726 CHADLQ6NUI6 762 aa19.02■□□□□ 0.64
SHKBP1-208ENST00000595726 BCL2L12Q9HB09 334 aa19.01■□□□□ 0.63
SHKBP1-208ENST00000595726 PRDM10Q9NQV6 1147 aa19.01■□□□□ 0.63
SHKBP1-208ENST00000595726 ERFEQ4G0M1 354 aa19■□□□□ 0.63
SHKBP1-208ENST00000595726 CDCA8Q53HL2 280 aa19■□□□□ 0.63
SHKBP1-208ENST00000595726 ADAMTS7Q9UKP4 1686 aa19■□□□□ 0.63
SHKBP1-208ENST00000595726 CCDC88AQ3V6T2 1871 aa19■□□□□ 0.63
SHKBP1-208ENST00000595726 SOS1Q07889 1333 aaPredicted RBP19■□□□□ 0.63
SHKBP1-208ENST00000595726 CARMIL3Q8ND23 1372 aa18.99■□□□□ 0.63
SHKBP1-208ENST00000595726 H0YIN7 160 aa18.99■□□□□ 0.63
SHKBP1-208ENST00000595726 DDNO94850 711 aaPredicted RBP18.99■□□□□ 0.63
SHKBP1-208ENST00000595726 AEBP1Q8IUX7 1158 aa18.99■□□□□ 0.63
SHKBP1-208ENST00000595726 NARFQ9UHQ1 456 aa18.99■□□□□ 0.63
SHKBP1-208ENST00000595726 TJP1Q07157 1748 aa18.99■□□□□ 0.63
SHKBP1-208ENST00000595726 TIAM2Q8IVF5 1701 aa18.99■□□□□ 0.63
SHKBP1-208ENST00000595726 CNTNAP1P78357 1384 aa18.98■□□□□ 0.63
SHKBP1-208ENST00000595726 C21orf2O43822 256 aa18.98■□□□□ 0.63
SHKBP1-208ENST00000595726 AMOTQ4VCS5 1084 aa18.98■□□□□ 0.63
SHKBP1-208ENST00000595726 C1orf141Q5JVX7 400 aa18.98■□□□□ 0.63
SHKBP1-208ENST00000595726 AFDNP55196 1824 aaKnown RBP18.97■□□□□ 0.63
SHKBP1-208ENST00000595726 CYP19A1P11511 503 aaPredicted RBP18.97■□□□□ 0.63
SHKBP1-208ENST00000595726 CTCFP49711 727 aaPredicted RBP18.97■□□□□ 0.63
SHKBP1-208ENST00000595726 VEGFBP49765 207 aa18.97■□□□□ 0.63
SHKBP1-208ENST00000595726 LBX1P52954 281 aa18.97■□□□□ 0.63
SHKBP1-208ENST00000595726 FAM161AQ3B820 660 aa18.97■□□□□ 0.63
SHKBP1-208ENST00000595726 BICDL1Q6ZP65 573 aa18.97■□□□□ 0.63
SHKBP1-208ENST00000595726 CCDC24Q8N4L8 307 aa18.97■□□□□ 0.63
SHKBP1-208ENST00000595726 ZNF622Q969S3 477 aaKnown RBP eCLIP18.97■□□□□ 0.63
SHKBP1-208ENST00000595726 AIDAQ96BJ3 306 aa18.96■□□□□ 0.63
SHKBP1-208ENST00000595726 SLC39A6Q13433 755 aa18.95■□□□□ 0.62
SHKBP1-208ENST00000595726 ZBTB1Q9Y2K1 713 aa18.95■□□□□ 0.62
SHKBP1-208ENST00000595726 ABHD8Q96I13 439 aa18.93■□□□□ 0.62
SHKBP1-208ENST00000595726 LGR6Q9HBX8 967 aa18.93■□□□□ 0.62
SHKBP1-208ENST00000595726 WBP1LQ9NX94 342 aa18.93■□□□□ 0.62
SHKBP1-208ENST00000595726 PASKQ96RG2 1323 aa18.93■□□□□ 0.62
SHKBP1-208ENST00000595726 COL15A1P39059 1388 aa18.93■□□□□ 0.62
SHKBP1-208ENST00000595726 NRXN2Q9P2S2 1712 aa18.92■□□□□ 0.62
SHKBP1-208ENST00000595726 DLEC1Q9Y238 1755 aa18.92■□□□□ 0.62
SHKBP1-208ENST00000595726 PCGF6Q9BYE7 350 aa18.92■□□□□ 0.62
SHKBP1-208ENST00000595726 CANXP27824 592 aaKnown RBP18.91■□□□□ 0.62
SHKBP1-208ENST00000595726 SULT6B1Q6IMI4 303 aa18.91■□□□□ 0.62
SHKBP1-208ENST00000595726 TMEM88BA6NKF7 163 aa18.9■□□□□ 0.62
SHKBP1-208ENST00000595726 POLR3GLQ9BT43 218 aa18.9■□□□□ 0.62
SHKBP1-208ENST00000595726 SLC52A2Q9HAB3 445 aa18.9■□□□□ 0.62
SHKBP1-208ENST00000595726 ITGBL1O95965 494 aaPredicted RBP18.89■□□□□ 0.61
SHKBP1-208ENST00000595726 HSPA8P11142 646 aaKnown RBP18.89■□□□□ 0.61
SHKBP1-208ENST00000595726 TBC1D9BQ66K14 1250 aa18.89■□□□□ 0.61
SHKBP1-208ENST00000595726 LDHDQ86WU2 507 aa18.89■□□□□ 0.61
SHKBP1-208ENST00000595726 TAOK3Q9H2K8 898 aa18.89■□□□□ 0.61
SHKBP1-208ENST00000595726 TAF1DQ9H5J8 278 aaPredicted RBP18.89■□□□□ 0.61
SHKBP1-208ENST00000595726 BRIP1Q9BX63 1249 aa18.88■□□□□ 0.61
SHKBP1-208ENST00000595726 EAPPQ56P03 285 aaPredicted RBP18.87■□□□□ 0.61
SHKBP1-208ENST00000595726 LTBP3Q9NS15 1303 aa18.86■□□□□ 0.61
SHKBP1-208ENST00000595726 PDE6BP35913 854 aa18.86■□□□□ 0.61
SHKBP1-208ENST00000595726 PRR5LQ6MZQ0 368 aa18.86■□□□□ 0.61
SHKBP1-208ENST00000595726 DICER1Q9UPY3 1922 aaKnown RBP18.85■□□□□ 0.61
SHKBP1-208ENST00000595726 IQCA1LA6NCM1 817 aa18.85■□□□□ 0.61
SHKBP1-208ENST00000595726 CCDC85CA6NKD9 419 aa18.85■□□□□ 0.61
SHKBP1-208ENST00000595726 AKAP4Q5JQC9 854 aa18.85■□□□□ 0.61
SHKBP1-208ENST00000595726 CLEC11AQ9Y240 323 aa18.85■□□□□ 0.61
SHKBP1-208ENST00000595726 FER1L6Q2WGJ9 1857 aa18.85■□□□□ 0.61
SHKBP1-208ENST00000595726 ANKRD31Q8N7Z5 1873 aa18.84■□□□□ 0.61
SHKBP1-208ENST00000595726 CLSPNQ9HAW4 1339 aa18.84■□□□□ 0.61
SHKBP1-208ENST00000595726 RNMTO43148 476 aaKnown RBP18.84■□□□□ 0.61
SHKBP1-208ENST00000595726 EIF5P55010 431 aaKnown RBP18.84■□□□□ 0.61
SHKBP1-208ENST00000595726 DEFB115Q30KQ5 88 aa18.84■□□□□ 0.61
SHKBP1-208ENST00000595726 TBC1D2BQ9UPU7 963 aa18.84■□□□□ 0.61
SHKBP1-208ENST00000595726 MLLT1Q03111 559 aaPredicted RBP18.83■□□□□ 0.6
SHKBP1-208ENST00000595726 PRPF40BQ6NWY9 871 aaKnown RBP18.83■□□□□ 0.6
SHKBP1-208ENST00000595726 L3MBTL3Q96JM7 780 aaPredicted RBP18.83■□□□□ 0.6
SHKBP1-208ENST00000595726 SCN11AQ9UI33 1791 aa18.83■□□□□ 0.6
SHKBP1-208ENST00000595726 MAP1SQ66K74 1059 aaPredicted RBP18.82■□□□□ 0.6
SHKBP1-208ENST00000595726 ZNF330Q9Y3S2 320 aaPredicted RBP18.82■□□□□ 0.6
SHKBP1-208ENST00000595726 TNRC18O15417 2968 aaPredicted RBP18.81■□□□□ 0.6
SHKBP1-208ENST00000595726 WDR33Q9C0J8 1336 aaKnown RBP18.81■□□□□ 0.6
SHKBP1-208ENST00000595726 ZNF541Q9H0D2 1346 aa18.81■□□□□ 0.6
SHKBP1-208ENST00000595726 COL11A2P13942 1736 aaPredicted RBP18.81■□□□□ 0.6
SHKBP1-208ENST00000595726 RASSF10A6NK89 507 aa18.81■□□□□ 0.6
SHKBP1-208ENST00000595726 IL13P35225 146 aa18.81■□□□□ 0.6
SHKBP1-208ENST00000595726 CNKSR1Q969H4 720 aa18.81■□□□□ 0.6
SHKBP1-208ENST00000595726 PDZRN3Q9UPQ7 1066 aa18.81■□□□□ 0.6
SHKBP1-208ENST00000595726 VIRMAQ69YN4 1812 aaKnown RBP18.81■□□□□ 0.6
SHKBP1-208ENST00000595726 SLX4Q8IY92 1834 aa18.81■□□□□ 0.6
SHKBP1-208ENST00000595726 SRGNP10124 158 aa18.8■□□□□ 0.6
SHKBP1-208ENST00000595726 VSIG10Q8N0Z9 540 aa18.8■□□□□ 0.6
SHKBP1-208ENST00000595726 CNTROBQ8N137 903 aa18.8■□□□□ 0.6
SHKBP1-208ENST00000595726 STARD3NLO95772 234 aa18.79■□□□□ 0.6
SHKBP1-208ENST00000595726 EPHX2P34913 555 aa18.79■□□□□ 0.6
SHKBP1-208ENST00000595726 MAP2K1Q02750 393 aaPredicted RBP18.79■□□□□ 0.6
SHKBP1-208ENST00000595726 STYK1Q6J9G0 422 aa18.79■□□□□ 0.6
SHKBP1-208ENST00000595726 OLFM4Q6UX06 510 aa18.79■□□□□ 0.6
SHKBP1-208ENST00000595726 C7orf43Q8WVR3 580 aa18.79■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms