RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 PLEKHO1Q53GL0 409 aaPredicted RBP16.4■□□□□ 0.22
SHMT2-222ENST00000555774 BEND3Q5T5X7 828 aa16.4■□□□□ 0.22
SHMT2-222ENST00000555774 RHPN1Q8TCX5 695 aa16.4■□□□□ 0.22
SHMT2-222ENST00000555774 USP42Q9H9J4 1324 aaKnown RBP16.4■□□□□ 0.22
SHMT2-222ENST00000555774 SURF6O75683 361 aaKnown RBP16.4■□□□□ 0.22
SHMT2-222ENST00000555774 BRD1O95696 1058 aa16.4■□□□□ 0.22
SHMT2-222ENST00000555774 ANKLE2Q86XL3 938 aa16.4■□□□□ 0.22
SHMT2-222ENST00000555774 ZNF142P52746 1687 aaPredicted RBP16.39■□□□□ 0.21
SHMT2-222ENST00000555774 ZSCAN23Q3MJ62 389 aa16.39■□□□□ 0.21
SHMT2-222ENST00000555774 PALD1Q9ULE6 856 aa16.39■□□□□ 0.21
SHMT2-222ENST00000555774 HDAC5Q9UQL6 1122 aa16.39■□□□□ 0.21
SHMT2-222ENST00000555774 HSPA4P34932 840 aa16.39■□□□□ 0.21
SHMT2-222ENST00000555774 PI4K2BQ8TCG2 481 aa16.39■□□□□ 0.21
SHMT2-222ENST00000555774 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.39■□□□□ 0.21
SHMT2-222ENST00000555774 SLIT3O75094 1523 aa16.38■□□□□ 0.21
SHMT2-222ENST00000555774 MBD3O95983 291 aa16.38■□□□□ 0.21
SHMT2-222ENST00000555774 TEFQ10587 303 aa16.38■□□□□ 0.21
SHMT2-222ENST00000555774 MTX1Q13505 466 aa16.38■□□□□ 0.21
SHMT2-222ENST00000555774 CAVIN1Q6NZI2 390 aaKnown RBP16.38■□□□□ 0.21
SHMT2-222ENST00000555774 UNC5CLQ8IV45 518 aa16.38■□□□□ 0.21
SHMT2-222ENST00000555774 CHPF2Q9P2E5 772 aa16.38■□□□□ 0.21
SHMT2-222ENST00000555774 CRYBG1Q9Y4K1 1723 aa16.38■□□□□ 0.21
SHMT2-222ENST00000555774 SRGAP3O43295 1099 aa16.37■□□□□ 0.21
SHMT2-222ENST00000555774 CNTROBQ8N137 903 aa16.37■□□□□ 0.21
SHMT2-222ENST00000555774 IL1RAPL2Q9NP60 686 aa16.37■□□□□ 0.21
SHMT2-222ENST00000555774 TTC41PQ6P2S7 1318 aa16.37■□□□□ 0.21
SHMT2-222ENST00000555774 PRPF40AO75400 957 aaKnown RBP16.37■□□□□ 0.21
SHMT2-222ENST00000555774 EIF2S2P20042 333 aaKnown RBP16.37■□□□□ 0.21
SHMT2-222ENST00000555774 PSME1Q06323 249 aa16.37■□□□□ 0.21
SHMT2-222ENST00000555774 LGR6Q9HBX8 967 aa16.37■□□□□ 0.21
SHMT2-222ENST00000555774 BTBD11A6QL63 1104 aa16.36■□□□□ 0.21
SHMT2-222ENST00000555774 ALDH1L1O75891 902 aa16.36■□□□□ 0.21
SHMT2-222ENST00000555774 NCLP19338 710 aaKnown RBP16.36■□□□□ 0.21
SHMT2-222ENST00000555774 ZNF530Q6P9A1 599 aaPredicted RBP16.36■□□□□ 0.21
SHMT2-222ENST00000555774 DBF4Q9UBU7 674 aaPredicted RBP16.36■□□□□ 0.21
SHMT2-222ENST00000555774 RAD50Q92878 1312 aa16.36■□□□□ 0.21
SHMT2-222ENST00000555774 CAMTA1Q9Y6Y1 1673 aa16.36■□□□□ 0.21
SHMT2-222ENST00000555774 PI4KAP2A4QPH2 592 aa16.36■□□□□ 0.21
SHMT2-222ENST00000555774 SGSM2O43147 1006 aa16.36■□□□□ 0.21
SHMT2-222ENST00000555774 PLEKHG5O94827 1062 aa16.36■□□□□ 0.21
SHMT2-222ENST00000555774 NUTM1Q86Y26 1132 aa16.36■□□□□ 0.21
SHMT2-222ENST00000555774 PI4KAP1Q8N8J0 262 aa16.36■□□□□ 0.21
SHMT2-222ENST00000555774 AK9Q5TCS8 1911 aa16.36■□□□□ 0.21
SHMT2-222ENST00000555774 ADCY9O60503 1353 aa16.35■□□□□ 0.21
SHMT2-222ENST00000555774 GPT2Q8TD30 523 aa16.35■□□□□ 0.21
SHMT2-222ENST00000555774 NBPF7P0C2Y1 421 aaPredicted RBP16.35■□□□□ 0.21
SHMT2-222ENST00000555774 HEG1Q9ULI3 1381 aa16.34■□□□□ 0.21
SHMT2-222ENST00000555774 RNMTO43148 476 aaKnown RBP16.34■□□□□ 0.21
SHMT2-222ENST00000555774 GLRX3O76003 335 aaKnown RBP16.34■□□□□ 0.21
SHMT2-222ENST00000555774 HS1BP3Q53T59 392 aa16.34■□□□□ 0.21
SHMT2-222ENST00000555774 ESCO1Q5FWF5 840 aa16.34■□□□□ 0.21
SHMT2-222ENST00000555774 C1orf141Q5JVX7 400 aa16.34■□□□□ 0.21
SHMT2-222ENST00000555774 ERC1Q8IUD2 1116 aa16.34■□□□□ 0.21
SHMT2-222ENST00000555774 ARHGEF25Q86VW2 580 aa16.33■□□□□ 0.2
SHMT2-222ENST00000555774 ERBB4Q15303 1308 aa16.32■□□□□ 0.2
SHMT2-222ENST00000555774 WDR33Q9C0J8 1336 aaKnown RBP16.32■□□□□ 0.2
SHMT2-222ENST00000555774 KCNQ3O43525 872 aa16.32■□□□□ 0.2
SHMT2-222ENST00000555774 LRSAM1Q6UWE0 723 aa16.32■□□□□ 0.2
SHMT2-222ENST00000555774 LSG1Q9H089 658 aaKnown RBP16.32■□□□□ 0.2
SHMT2-222ENST00000555774 KSR2Q6VAB6 950 aa16.31■□□□□ 0.2
SHMT2-222ENST00000555774 KIAA1211Q6ZU35 1233 aa16.31■□□□□ 0.2
SHMT2-222ENST00000555774 RUFY2Q8WXA3 655 aa16.31■□□□□ 0.2
SHMT2-222ENST00000555774 PXDNQ92626 1479 aa16.31■□□□□ 0.2
SHMT2-222ENST00000555774 CLASRPQ8N2M8 674 aaKnown RBP16.31■□□□□ 0.2
SHMT2-222ENST00000555774 GPATCH3Q96I76 525 aa16.31■□□□□ 0.2
SHMT2-222ENST00000555774 IL25Q9H293 177 aa16.31■□□□□ 0.2
SHMT2-222ENST00000555774 ADAMTS7Q9UKP4 1686 aa16.31■□□□□ 0.2
SHMT2-222ENST00000555774 RGPD2P0DJD1 1756 aa16.3■□□□□ 0.2
SHMT2-222ENST00000555774 GIGYF1O75420 1035 aaPredicted RBP16.3■□□□□ 0.2
SHMT2-222ENST00000555774 GCP02774 474 aa16.3■□□□□ 0.2
SHMT2-222ENST00000555774 MPRIPQ6WCQ1 1025 aa16.3■□□□□ 0.2
SHMT2-222ENST00000555774 SYAP1Q96A49 352 aaPredicted RBP16.3■□□□□ 0.2
SHMT2-222ENST00000555774 LRRC59Q96AG4 307 aaKnown RBP16.3■□□□□ 0.2
SHMT2-222ENST00000555774 UPF3BQ9BZI7 483 aaKnown RBP16.3■□□□□ 0.2
SHMT2-222ENST00000555774 HYPKQ9NX55 129 aa16.3■□□□□ 0.2
SHMT2-222ENST00000555774 SNX14Q9Y5W7 946 aa16.3■□□□□ 0.2
SHMT2-222ENST00000555774 OS9Q13438 667 aaPredicted RBP16.3■□□□□ 0.2
SHMT2-222ENST00000555774 ZSCAN30Q86W11 494 aa16.3■□□□□ 0.2
SHMT2-222ENST00000555774 MST1RQ04912 1400 aa16.29■□□□□ 0.2
SHMT2-222ENST00000555774 PRIM1P49642 420 aaKnown RBP16.29■□□□□ 0.2
SHMT2-222ENST00000555774 PDLIM2Q96JY6 352 aa16.29■□□□□ 0.2
SHMT2-222ENST00000555774 TTC14Q96N46 770 aa16.29■□□□□ 0.2
SHMT2-222ENST00000555774 RBSNQ9H1K0 784 aa16.29■□□□□ 0.2
SHMT2-222ENST00000555774 TMEM63CQ9P1W3 806 aa16.29■□□□□ 0.2
SHMT2-222ENST00000555774 MAP3K2Q9Y2U5 619 aa16.29■□□□□ 0.2
SHMT2-222ENST00000555774 UTYO14607 1347 aa16.29■□□□□ 0.2
SHMT2-222ENST00000555774 ANKRD24Q8TF21 1146 aa16.29■□□□□ 0.2
SHMT2-222ENST00000555774 ECHDC1Q9NTX5 307 aa16.29■□□□□ 0.2
SHMT2-222ENST00000555774 C9orf78Q9NZ63 289 aaPredicted RBP16.29■□□□□ 0.2
SHMT2-222ENST00000555774 SIPA1L3O60292 1781 aaPredicted RBP16.28■□□□□ 0.2
SHMT2-222ENST00000555774 RBM27Q9P2N5 1060 aaKnown RBP16.28■□□□□ 0.2
SHMT2-222ENST00000555774 ZBTB7CA1YPR0 619 aa16.28■□□□□ 0.2
SHMT2-222ENST00000555774 DDX58O95786 925 aaKnown RBP16.28■□□□□ 0.2
SHMT2-222ENST00000555774 MAP4K4O95819 1239 aaPredicted RBP16.28■□□□□ 0.2
SHMT2-222ENST00000555774 TMEM87AQ8NBN3 555 aa16.28■□□□□ 0.2
SHMT2-222ENST00000555774 LINS1Q8NG48 757 aa16.28■□□□□ 0.2
SHMT2-222ENST00000555774 DIAPH3Q9NSV4 1193 aa16.28■□□□□ 0.2
SHMT2-222ENST00000555774 PHF14O94880 888 aa16.27■□□□□ 0.2
SHMT2-222ENST00000555774 NOL8Q76FK4 1167 aaKnown RBP16.27■□□□□ 0.2
SHMT2-222ENST00000555774 NAP1L5Q96NT1 182 aaPredicted RBP16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms